Click here to switch to the map view.

The map label for this gene is ydaM [H]

Identifier: 157962335

GI number: 157962335

Start: 3063013

End: 3064038

Strand: Direct

Name: ydaM [H]

Synonym: Spea_2514

Alternate gene names: 157962335

Gene position: 3063013-3064038 (Clockwise)

Preceding gene: 157962334

Following gene: 157962339

Centisome position: 59.19

GC content: 45.42

Gene sequence:

>1026_bases
ATGGCTAACCCACTGCTAAGGGAATCGGCAACAAAGTTAAAAAAAGCCATTCCTTTGATGCTAAAACATCAGATCCCGAC
AACGCCAACCAACTATGCGCTTTGGTATGCTTACGTCGGTGAAAAAAGCCCAAATCTTAACCAGCGCTTAGACGAAATTG
TCAGCCAATATAGCACCTGTCCACCAAGCCATAGCGAGCGGCTATATCAAGAGTATCTAGCCGATCCAGCTGCGCTAAAT
GTGGTCGATATGCGACTTAATCTCGATGCTATGGTGACAGAGCTTTCGCAATCATTGAAAGATACCAACCTTGATGCCAG
CCAGTTCCATAACAAGATAAGTAGCAACTACAACAAGCTTAACAAAATTGAGAATGACGGCTTTACCATTGAAGAAGTGC
TAACTGTTGTCAAAAGTCTAGTTCAGGACTCCAATGACATTCGCATGAGCGCACAGCATTTCTCTGCTCAGCTGGCTAAA
GCGCAATCAGAAATTGATGCCCTAAAGCAACAGTTAAAGCAGTCAGAGCATGAGATGCATTATGATGCACTAACCAGCTC
GCTTAATCGCCGTGCATTCGATAATGATCTAAAAGGCATTTTGCAACAGCATCCACAAGGTCTCTGTCTGATAATTGCCG
ATATCGATCACTTTAAAGTCTTTAACGATACCTACGGCCACCAGCTCGGCGACCAAGTACTTAAAGCCGTGACTAAACGC
CTTACGGAAGCCTGTAAAGACGGCACTAAACTATATCGCTTTGGCGGCGAAGAATTTGCTCTTATCGTGCCTAAGAGCGA
ATTACGACGCGCTCGCCAACTGGCAGAGTCAATGCGCCGTAGCTTGGAAAAGCTCACCTTAAAAGATAAACGTAAAGGCG
AGACGATTAACAACATCAGCGCTTCTTTTGGGGTCGCCGAATATCAAACAGATGATACCAATATCGCATTAATTGATCGC
GCCGACAGCCAGCTGTATCAGGCTAAGAACCTTGGCCGCAACCGAGTCATGCCGATAATACGTTAG

Upstream 100 bases:

>100_bases
AGCAAAAACATATTAGAATGGATAAAAAAGTGCACAATGATGCCCTAATGCATTGCATGCAAATAACAATATAAAAATTC
TTAGGCGATAAGGCACCATC

Downstream 100 bases:

>100_bases
CCTCGAAGCGGATTAACCTTAAAGCAAGTCATAGTCAAACCTTTAGGCCATGACACCATTACCTAGCTATCTCCTCACTG
TTTTCACAAAAGTACCGAGC

Product: diguanylate cyclase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 341; Mature: 340

Protein sequence:

>341_residues
MANPLLRESATKLKKAIPLMLKHQIPTTPTNYALWYAYVGEKSPNLNQRLDEIVSQYSTCPPSHSERLYQEYLADPAALN
VVDMRLNLDAMVTELSQSLKDTNLDASQFHNKISSNYNKLNKIENDGFTIEEVLTVVKSLVQDSNDIRMSAQHFSAQLAK
AQSEIDALKQQLKQSEHEMHYDALTSSLNRRAFDNDLKGILQQHPQGLCLIIADIDHFKVFNDTYGHQLGDQVLKAVTKR
LTEACKDGTKLYRFGGEEFALIVPKSELRRARQLAESMRRSLEKLTLKDKRKGETINNISASFGVAEYQTDDTNIALIDR
ADSQLYQAKNLGRNRVMPIIR

Sequences:

>Translated_341_residues
MANPLLRESATKLKKAIPLMLKHQIPTTPTNYALWYAYVGEKSPNLNQRLDEIVSQYSTCPPSHSERLYQEYLADPAALN
VVDMRLNLDAMVTELSQSLKDTNLDASQFHNKISSNYNKLNKIENDGFTIEEVLTVVKSLVQDSNDIRMSAQHFSAQLAK
AQSEIDALKQQLKQSEHEMHYDALTSSLNRRAFDNDLKGILQQHPQGLCLIIADIDHFKVFNDTYGHQLGDQVLKAVTKR
LTEACKDGTKLYRFGGEEFALIVPKSELRRARQLAESMRRSLEKLTLKDKRKGETINNISASFGVAEYQTDDTNIALIDR
ADSQLYQAKNLGRNRVMPIIR
>Mature_340_residues
ANPLLRESATKLKKAIPLMLKHQIPTTPTNYALWYAYVGEKSPNLNQRLDEIVSQYSTCPPSHSERLYQEYLADPAALNV
VDMRLNLDAMVTELSQSLKDTNLDASQFHNKISSNYNKLNKIENDGFTIEEVLTVVKSLVQDSNDIRMSAQHFSAQLAKA
QSEIDALKQQLKQSEHEMHYDALTSSLNRRAFDNDLKGILQQHPQGLCLIIADIDHFKVFNDTYGHQLGDQVLKAVTKRL
TEACKDGTKLYRFGGEEFALIVPKSELRRARQLAESMRRSLEKLTLKDKRKGETINNISASFGVAEYQTDDTNIALIDRA
DSQLYQAKNLGRNRVMPIIR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PAS (PER-ARNT-SIM) domains [H]

Homologues:

Organism=Escherichia coli, GI87081881, Length=168, Percent_Identity=38.6904761904762, Blast_Score=119, Evalue=3e-28,
Organism=Escherichia coli, GI1787262, Length=170, Percent_Identity=37.6470588235294, Blast_Score=104, Evalue=9e-24,
Organism=Escherichia coli, GI145693134, Length=188, Percent_Identity=35.1063829787234, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI1787802, Length=218, Percent_Identity=33.0275229357798, Blast_Score=94, Evalue=2e-20,
Organism=Escherichia coli, GI1787816, Length=162, Percent_Identity=35.8024691358025, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI87082007, Length=163, Percent_Identity=38.6503067484663, Blast_Score=89, Evalue=4e-19,
Organism=Escherichia coli, GI1788085, Length=185, Percent_Identity=30.2702702702703, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI1787056, Length=156, Percent_Identity=38.4615384615385, Blast_Score=82, Evalue=6e-17,
Organism=Escherichia coli, GI1786584, Length=159, Percent_Identity=34.5911949685535, Blast_Score=81, Evalue=1e-16,
Organism=Escherichia coli, GI1788381, Length=174, Percent_Identity=29.3103448275862, Blast_Score=79, Evalue=4e-16,
Organism=Escherichia coli, GI1788956, Length=85, Percent_Identity=38.8235294117647, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013656 [H]

Pfam domain/function: PF00990 GGDEF; PF08448 PAS_4 [H]

EC number: NA

Molecular weight: Translated: 38713; Mature: 38582

Theoretical pI: Translated: 8.08; Mature: 8.08

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MANPLLRESATKLKKAIPLMLKHQIPTTPTNYALWYAYVGEKSPNLNQRLDEIVSQYSTC
CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCC
PPSHSERLYQEYLADPAALNVVDMRLNLDAMVTELSQSLKDTNLDASQFHNKISSNYNKL
CCCHHHHHHHHHHCCCHHEEEEHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
NKIENDGFTIEEVLTVVKSLVQDSNDIRMSAQHFSAQLAKAQSEIDALKQQLKQSEHEMH
HHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YDALTSSLNRRAFDNDLKGILQQHPQGLCLIIADIDHFKVFNDTYGHQLGDQVLKAVTKR
HHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHH
LTEACKDGTKLYRFGGEEFALIVPKSELRRARQLAESMRRSLEKLTLKDKRKGETINNIS
HHHHHHCCCCEEEECCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
ASFGVAEYQTDDTNIALIDRADSQLYQAKNLGRNRVMPIIR
HHCCCCEEECCCCCEEEEECCHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure 
ANPLLRESATKLKKAIPLMLKHQIPTTPTNYALWYAYVGEKSPNLNQRLDEIVSQYSTC
CCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCC
PPSHSERLYQEYLADPAALNVVDMRLNLDAMVTELSQSLKDTNLDASQFHNKISSNYNKL
CCCHHHHHHHHHHCCCHHEEEEHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
NKIENDGFTIEEVLTVVKSLVQDSNDIRMSAQHFSAQLAKAQSEIDALKQQLKQSEHEMH
HHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YDALTSSLNRRAFDNDLKGILQQHPQGLCLIIADIDHFKVFNDTYGHQLGDQVLKAVTKR
HHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHH
LTEACKDGTKLYRFGGEEFALIVPKSELRRARQLAESMRRSLEKLTLKDKRKGETINNIS
HHHHHHCCCCEEEECCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
ASFGVAEYQTDDTNIALIDRADSQLYQAKNLGRNRVMPIIR
HHCCCCEEECCCCCEEEEECCHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]