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The map label for this gene is ymdB [C]

Identifier: 157962021

GI number: 157962021

Start: 2669574

End: 2670488

Strand: Direct

Name: ymdB [C]

Synonym: Spea_2200

Alternate gene names: 157962021

Gene position: 2669574-2670488 (Clockwise)

Preceding gene: 157962020

Following gene: 157962022

Centisome position: 51.59

GC content: 43.93

Gene sequence:

>915_bases
ATGACAGTGAAAGTGAAAGTGACCAGACTCAATATCCAAGATTATGCTCAGCAAATAGCACTCTATGAGCCATTTAAACC
GGACTTAAGCTCCCCAAAAAGCAAGGCCCAATTAGTGAGCGAGCTACTTAACCAGCTCTCTGAGGTTTTGGTTTCACTCG
GGATCACACATTTTCAAGATCACGACGCTCAAAGTCAGCGCATACTATTAGATAACGCCATGACGGTTTTGCCTGCAAAT
TATTTGTCAGCAGAGAGTACGGATGCACTGACTCAACTACTACAGATAGAAAGCGCCGAACGTGAGAGAACCGATGTAAC
AGACATAGCTGCAAAACCTTTTGTAATCATAGGCGATACTAAAATAATCCTATGGAAAGGAGACATAACCACACTCGCGG
TTGACGCTATAGTGAATGCCGCCAATAACCAAATGCTTGGCTGTTTTCAACCTCAGCATAAGTGCATCGATAACGCTATT
CATAATCGAGCTGGGGCGCAGTTAAGAGCCGATTGTGAGGTGATTATGGAGCTACAAGGCAATATTGAAGAGACTGGCAT
AGCAAAGATCACCCGAGCTTATAACTTGCCCTCTAAATTTGTGATCCATACCGTTGGGCCTATTGTACAAAATATGATTC
AGCCGATACACGCAGGACAACTCGCGTCCAGCTATCGCAGTATTTTAACCCTAGCAAAGCAAACTGAGCGTATTCGCAGT
CTAGCTTTCTGCTCTATATCAACCGGTATTTTTGGCTACCCGATTGAACAAGCCACACGAGTCGCACTCGATACCGTGAC
TCAGTGGTTAATGGAGAATCCAGATCAATTCGATACAATAGTCTTCAACGTATTTAGTGAGTACGACCACCATGTATACC
AATCAGCACTGGAGGATTATGTATGTCAGCTTTGA

Upstream 100 bases:

>100_bases
GTACAACGCTAGTAAACATGCTAGCACCAAGTAAGCCGTTAGCTATCACATGGATAGTTAGCGGCCTTTTTATTCGTGTA
AGCATCAGAGTGAAGTGACA

Downstream 100 bases:

>100_bases
ATGCTAAAGCGCTCGATCAAAACACCTTAACCAGCATACCTGCGCTATTGAACCAGGCCGATGCGATTCTCATTGGAGCC
GGCGCAGGCTTGAGTGCTGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 304; Mature: 303

Protein sequence:

>304_residues
MTVKVKVTRLNIQDYAQQIALYEPFKPDLSSPKSKAQLVSELLNQLSEVLVSLGITHFQDHDAQSQRILLDNAMTVLPAN
YLSAESTDALTQLLQIESAERERTDVTDIAAKPFVIIGDTKIILWKGDITTLAVDAIVNAANNQMLGCFQPQHKCIDNAI
HNRAGAQLRADCEVIMELQGNIEETGIAKITRAYNLPSKFVIHTVGPIVQNMIQPIHAGQLASSYRSILTLAKQTERIRS
LAFCSISTGIFGYPIEQATRVALDTVTQWLMENPDQFDTIVFNVFSEYDHHVYQSALEDYVCQL

Sequences:

>Translated_304_residues
MTVKVKVTRLNIQDYAQQIALYEPFKPDLSSPKSKAQLVSELLNQLSEVLVSLGITHFQDHDAQSQRILLDNAMTVLPAN
YLSAESTDALTQLLQIESAERERTDVTDIAAKPFVIIGDTKIILWKGDITTLAVDAIVNAANNQMLGCFQPQHKCIDNAI
HNRAGAQLRADCEVIMELQGNIEETGIAKITRAYNLPSKFVIHTVGPIVQNMIQPIHAGQLASSYRSILTLAKQTERIRS
LAFCSISTGIFGYPIEQATRVALDTVTQWLMENPDQFDTIVFNVFSEYDHHVYQSALEDYVCQL
>Mature_303_residues
TVKVKVTRLNIQDYAQQIALYEPFKPDLSSPKSKAQLVSELLNQLSEVLVSLGITHFQDHDAQSQRILLDNAMTVLPANY
LSAESTDALTQLLQIESAERERTDVTDIAAKPFVIIGDTKIILWKGDITTLAVDAIVNAANNQMLGCFQPQHKCIDNAIH
NRAGAQLRADCEVIMELQGNIEETGIAKITRAYNLPSKFVIHTVGPIVQNMIQPIHAGQLASSYRSILTLAKQTERIRSL
AFCSISTGIFGYPIEQATRVALDTVTQWLMENPDQFDTIVFNVFSEYDHHVYQSALEDYVCQL

Specific function: Unknown

COG id: COG2110

COG function: function code R; Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Macro domain [H]

Homologues:

Organism=Homo sapiens, GI117968621, Length=180, Percent_Identity=45.5555555555556, Blast_Score=152, Evalue=5e-37,
Organism=Homo sapiens, GI13569840, Length=182, Percent_Identity=43.4065934065934, Blast_Score=141, Evalue=7e-34,
Organism=Homo sapiens, GI207450721, Length=195, Percent_Identity=34.8717948717949, Blast_Score=110, Evalue=2e-24,
Organism=Homo sapiens, GI8923143, Length=195, Percent_Identity=34.8717948717949, Blast_Score=110, Evalue=2e-24,
Organism=Homo sapiens, GI154813199, Length=152, Percent_Identity=31.5789473684211, Blast_Score=74, Evalue=2e-13,
Organism=Homo sapiens, GI226371716, Length=152, Percent_Identity=30.2631578947368, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI226371714, Length=152, Percent_Identity=30.2631578947368, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI226371712, Length=152, Percent_Identity=30.2631578947368, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI226371710, Length=152, Percent_Identity=30.2631578947368, Blast_Score=67, Evalue=3e-11,
Organism=Homo sapiens, GI226371706, Length=152, Percent_Identity=30.2631578947368, Blast_Score=67, Evalue=3e-11,
Organism=Homo sapiens, GI226371718, Length=152, Percent_Identity=30.2631578947368, Blast_Score=66, Evalue=3e-11,
Organism=Escherichia coli, GI1787283, Length=181, Percent_Identity=38.121546961326, Blast_Score=99, Evalue=3e-22,
Organism=Caenorhabditis elegans, GI17538214, Length=182, Percent_Identity=37.9120879120879, Blast_Score=106, Evalue=1e-23,
Organism=Drosophila melanogaster, GI24586353, Length=176, Percent_Identity=32.3863636363636, Blast_Score=91, Evalue=1e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002589
- InterPro:   IPR022942 [H]

Pfam domain/function: PF01661 Macro [H]

EC number: NA

Molecular weight: Translated: 33906; Mature: 33775

Theoretical pI: Translated: 4.99; Mature: 4.99

Prosite motif: PS51154 MACRO

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTVKVKVTRLNIQDYAQQIALYEPFKPDLSSPKSKAQLVSELLNQLSEVLVSLGITHFQD
CEEEEEEEEECHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHCC
HDAQSQRILLDNAMTVLPANYLSAESTDALTQLLQIESAERERTDVTDIAAKPFVIIGDT
CCCCCCEEHHHCCHHHHCCHHHCCCHHHHHHHHHHHHHHHHHHCCHHHHCCCCEEEECCC
KIILWKGDITTLAVDAIVNAANNQMLGCFQPQHKCIDNAIHNRAGAQLRADCEVIMELQG
EEEEEECCHHHHHHHHHHHHCCCCEEECCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHC
NIEETGIAKITRAYNLPSKFVIHTVGPIVQNMIQPIHAGQLASSYRSILTLAKQTERIRS
CCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LAFCSISTGIFGYPIEQATRVALDTVTQWLMENPDQFDTIVFNVFSEYDHHVYQSALEDY
HHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
VCQL
HHCC
>Mature Secondary Structure 
TVKVKVTRLNIQDYAQQIALYEPFKPDLSSPKSKAQLVSELLNQLSEVLVSLGITHFQD
EEEEEEEEECHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHCC
HDAQSQRILLDNAMTVLPANYLSAESTDALTQLLQIESAERERTDVTDIAAKPFVIIGDT
CCCCCCEEHHHCCHHHHCCHHHCCCHHHHHHHHHHHHHHHHHHCCHHHHCCCCEEEECCC
KIILWKGDITTLAVDAIVNAANNQMLGCFQPQHKCIDNAIHNRAGAQLRADCEVIMELQG
EEEEEECCHHHHHHHHHHHHCCCCEEECCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHC
NIEETGIAKITRAYNLPSKFVIHTVGPIVQNMIQPIHAGQLASSYRSILTLAKQTERIRS
CCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LAFCSISTGIFGYPIEQATRVALDTVTQWLMENPDQFDTIVFNVFSEYDHHVYQSALEDY
HHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
VCQL
HHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA