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The map label for this gene is sucB [H]

Identifier: 157961613

GI number: 157961613

Start: 2185482

End: 2186678

Strand: Direct

Name: sucB [H]

Synonym: Spea_1789

Alternate gene names: 157961613

Gene position: 2185482-2186678 (Clockwise)

Preceding gene: 157961612

Following gene: 157961614

Centisome position: 42.23

GC content: 46.03

Gene sequence:

>1197_bases
ATGAGTATCGAAATTAAGGTACCCGTTCTGCCAGAATCAGTTGCAGATGCAACCATTGCTACTTGGCATGTTCAAGCTGG
CGAGCAAGTTTCTCGTGATCAAATCCTTGTTGATATTGAAACTGATAAAGTCGTACTTGAAGTTGTTGCACCAGAAGATG
GACAAGTTGCTGAGTTTCTAGCTCAGGAAGGTGACACAGTTCTTGGTGAAGCAGTGATTGCTAGCTTTATTGCTGGCGCA
GTTGCAGGTCAAGAAGTCACTAAAGCCCAAGCGGAAGCGGCAACGCCTGCAAGCGATGCATCTGACGAGTCAAACGACGC
ACTAAGCCCTTCAGTTCGCCGTCTTATCGCAGAGCATAATGTTGATGCCAATGCGATTAATGGCACGGGTGTTGGCGGAC
GCATCACTAAAGAAGACGTTGAAGCGTTCGTTAAGAACAAGCCTGCAGCAGCGCCAGCAAGTGCTTCAGCACCTGCTGCA
GTGGCGCCATTAGCCGAGCGTAGCGAAAAGCGTGTGCCTATGACACGTCTTCGTAAAACGATTGCTAATCGTCTGCTTGA
AGCAAAAAACTCTACGGCTATGCTAACAACGTTTAACGAAGTTAACATGAAGCCAATTATGGATATCCGTAAGCAATATC
AAGAGGTTTTTGAGAAGCGCCACGGTATTCGTCTAGGTTTCATGTCTTTCTATGTTAAGGCTGTTACTGAAGCGCTTAAG
CGTTTCCCTGAAGTGAATGCATCAATCGATGGTGATGACATTGTTTATCACAACTACTTTGATATCAGCATCGCAGTGTC
GACTCCTCGTGGCCTAGTGACACCAGTTTTGCGTGACACTGACAAGATGAGCCTTGCCGATATCGAGCGTAATGTTCGTG
AACTAGCCATTAAAGGTCGTGACGGTAAGTTAACTGTTGATGACATGACTGGCGGTAACTTCACCGTGACTAACGGTGGT
GTATTTGGCTCATTGATGTCAACGCCAATTTTGAATTTGCCACAGAGTGCGATCTTAGGCATGCATGCCATCAAAGATCG
CCCTATGGCAGTAAATGGTCAGGTTGAAATCCTGCCTATGATGTACCTCGCACTTTCTTACGATCACCGTATTGTAGATG
GACGTGAATCAGTTGGTTACTTGGTTGCTATTAAAGACTTCCTTGAAGATCCAACTCGTCTGCTTCTTGACCTATAA

Upstream 100 bases:

>100_bases
CATGTGGTTATCCTGCATTGCATGCTCAGCAACAAGAATCATTAATCAGCAGTGCGTTGAAACTGTAGTAATAGACATTA
TATAAAAAGGATCGTAATCC

Downstream 100 bases:

>100_bases
GTCAAGACAGACAATACCCTAGCTGCGGGCCCGTTTGGGCCTGCTGAAATACATAAGAAGTATAATGGATAGATCATCAT
GAATTTGCATGAATATCAGG

Product: 2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase

Products: NA

Alternate protein names: 2-oxoglutarate dehydrogenase complex component E2; OGDC-E2; Dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase complex [H]

Number of amino acids: Translated: 398; Mature: 397

Protein sequence:

>398_residues
MSIEIKVPVLPESVADATIATWHVQAGEQVSRDQILVDIETDKVVLEVVAPEDGQVAEFLAQEGDTVLGEAVIASFIAGA
VAGQEVTKAQAEAATPASDASDESNDALSPSVRRLIAEHNVDANAINGTGVGGRITKEDVEAFVKNKPAAAPASASAPAA
VAPLAERSEKRVPMTRLRKTIANRLLEAKNSTAMLTTFNEVNMKPIMDIRKQYQEVFEKRHGIRLGFMSFYVKAVTEALK
RFPEVNASIDGDDIVYHNYFDISIAVSTPRGLVTPVLRDTDKMSLADIERNVRELAIKGRDGKLTVDDMTGGNFTVTNGG
VFGSLMSTPILNLPQSAILGMHAIKDRPMAVNGQVEILPMMYLALSYDHRIVDGRESVGYLVAIKDFLEDPTRLLLDL

Sequences:

>Translated_398_residues
MSIEIKVPVLPESVADATIATWHVQAGEQVSRDQILVDIETDKVVLEVVAPEDGQVAEFLAQEGDTVLGEAVIASFIAGA
VAGQEVTKAQAEAATPASDASDESNDALSPSVRRLIAEHNVDANAINGTGVGGRITKEDVEAFVKNKPAAAPASASAPAA
VAPLAERSEKRVPMTRLRKTIANRLLEAKNSTAMLTTFNEVNMKPIMDIRKQYQEVFEKRHGIRLGFMSFYVKAVTEALK
RFPEVNASIDGDDIVYHNYFDISIAVSTPRGLVTPVLRDTDKMSLADIERNVRELAIKGRDGKLTVDDMTGGNFTVTNGG
VFGSLMSTPILNLPQSAILGMHAIKDRPMAVNGQVEILPMMYLALSYDHRIVDGRESVGYLVAIKDFLEDPTRLLLDL
>Mature_397_residues
SIEIKVPVLPESVADATIATWHVQAGEQVSRDQILVDIETDKVVLEVVAPEDGQVAEFLAQEGDTVLGEAVIASFIAGAV
AGQEVTKAQAEAATPASDASDESNDALSPSVRRLIAEHNVDANAINGTGVGGRITKEDVEAFVKNKPAAAPASASAPAAV
APLAERSEKRVPMTRLRKTIANRLLEAKNSTAMLTTFNEVNMKPIMDIRKQYQEVFEKRHGIRLGFMSFYVKAVTEALKR
FPEVNASIDGDDIVYHNYFDISIAVSTPRGLVTPVLRDTDKMSLADIERNVRELAIKGRDGKLTVDDMTGGNFTVTNGGV
FGSLMSTPILNLPQSAILGMHAIKDRPMAVNGQVEILPMMYLALSYDHRIVDGRESVGYLVAIKDFLEDPTRLLLDL

Specific function: The 2-oxoglutarate dehydrogenase complex catalyzes the overall conversion of 2-oxoglutarate to succinyl-CoA and CO(2). It contains multiple copies of three enzymatic components:2- oxoglutarate dehydrogenase (E1), dihydrolipoamide succinyltransferase (E2)

COG id: COG0508

COG function: function code C; Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 lipoyl-binding domain [H]

Homologues:

Organism=Homo sapiens, GI19923748, Length=254, Percent_Identity=55.5118110236221, Blast_Score=289, Evalue=4e-78,
Organism=Homo sapiens, GI31711992, Length=434, Percent_Identity=30.8755760368664, Blast_Score=190, Evalue=2e-48,
Organism=Homo sapiens, GI110671329, Length=432, Percent_Identity=25.6944444444444, Blast_Score=154, Evalue=1e-37,
Organism=Homo sapiens, GI203098753, Length=451, Percent_Identity=25.9423503325942, Blast_Score=151, Evalue=9e-37,
Organism=Homo sapiens, GI203098816, Length=451, Percent_Identity=25.9423503325942, Blast_Score=150, Evalue=2e-36,
Organism=Homo sapiens, GI260898739, Length=161, Percent_Identity=33.5403726708075, Blast_Score=97, Evalue=4e-20,
Organism=Escherichia coli, GI1786946, Length=403, Percent_Identity=70.9677419354839, Blast_Score=574, Evalue=1e-165,
Organism=Escherichia coli, GI1786305, Length=407, Percent_Identity=32.1867321867322, Blast_Score=171, Evalue=8e-44,
Organism=Caenorhabditis elegans, GI25146366, Length=403, Percent_Identity=40.4466501240695, Blast_Score=301, Evalue=5e-82,
Organism=Caenorhabditis elegans, GI17560088, Length=437, Percent_Identity=30.6636155606407, Blast_Score=179, Evalue=2e-45,
Organism=Caenorhabditis elegans, GI17537937, Length=424, Percent_Identity=25.4716981132075, Blast_Score=155, Evalue=4e-38,
Organism=Caenorhabditis elegans, GI17538894, Length=312, Percent_Identity=29.1666666666667, Blast_Score=127, Evalue=1e-29,
Organism=Saccharomyces cerevisiae, GI6320352, Length=402, Percent_Identity=41.7910447761194, Blast_Score=312, Evalue=6e-86,
Organism=Saccharomyces cerevisiae, GI6324258, Length=449, Percent_Identity=24.4988864142539, Blast_Score=134, Evalue=3e-32,
Organism=Drosophila melanogaster, GI24645909, Length=228, Percent_Identity=59.6491228070175, Blast_Score=280, Evalue=1e-75,
Organism=Drosophila melanogaster, GI18859875, Length=416, Percent_Identity=25.4807692307692, Blast_Score=153, Evalue=2e-37,
Organism=Drosophila melanogaster, GI24582497, Length=229, Percent_Identity=32.7510917030568, Blast_Score=133, Evalue=2e-31,
Organism=Drosophila melanogaster, GI20129315, Length=229, Percent_Identity=32.7510917030568, Blast_Score=133, Evalue=3e-31,

Paralogues:

None

Copy number: 420 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 3096 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 3,000 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003016
- InterPro:   IPR001078
- InterPro:   IPR000089
- InterPro:   IPR023213
- InterPro:   IPR004167
- InterPro:   IPR011053
- InterPro:   IPR006255 [H]

Pfam domain/function: PF00198 2-oxoacid_dh; PF00364 Biotin_lipoyl; PF02817 E3_binding [H]

EC number: =2.3.1.61 [H]

Molecular weight: Translated: 43055; Mature: 42923

Theoretical pI: Translated: 4.72; Mature: 4.72

Prosite motif: PS50968 BIOTINYL_LIPOYL ; PS00189 LIPOYL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIEIKVPVLPESVADATIATWHVQAGEQVSRDQILVDIETDKVVLEVVAPEDGQVAEFL
CEEEEEECCCCCHHCCCEEEEEEECCCCCCCCCEEEEEEECCEEEEEEECCCCCHHHHHH
AQEGDTVLGEAVIASFIAGAVAGQEVTKAQAEAATPASDASDESNDALSPSVRRLIAEHN
HHCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHCC
VDANAINGTGVGGRITKEDVEAFVKNKPAAAPASASAPAAVAPLAERSEKRVPMTRLRKT
CCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHH
IANRLLEAKNSTAMLTTFNEVNMKPIMDIRKQYQEVFEKRHGIRLGFMSFYVKAVTEALK
HHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEHHHHHHHHHHHHHHH
RFPEVNASIDGDDIVYHNYFDISIAVSTPRGLVTPVLRDTDKMSLADIERNVRELAIKGR
HCCCCCCCCCCCCEEEEEEEEEEEEEECCCCHHHHHHCCCCCHHHHHHHHHHHHHEEECC
DGKLTVDDMTGGNFTVTNGGVFGSLMSTPILNLPQSAILGMHAIKDRPMAVNGQVEILPM
CCEEEEEECCCCCEEEECCCHHHHHHHCCCCCCCHHHHHHHHHHCCCCEEECCCEEHHHH
MYLALSYDHRIVDGRESVGYLVAIKDFLEDPTRLLLDL
HHHHHCCCCEEECCCCCCCCEEEEHHHHCCHHHHHHCC
>Mature Secondary Structure 
SIEIKVPVLPESVADATIATWHVQAGEQVSRDQILVDIETDKVVLEVVAPEDGQVAEFL
EEEEEECCCCCHHCCCEEEEEEECCCCCCCCCEEEEEEECCEEEEEEECCCCCHHHHHH
AQEGDTVLGEAVIASFIAGAVAGQEVTKAQAEAATPASDASDESNDALSPSVRRLIAEHN
HHCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHCC
VDANAINGTGVGGRITKEDVEAFVKNKPAAAPASASAPAAVAPLAERSEKRVPMTRLRKT
CCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHH
IANRLLEAKNSTAMLTTFNEVNMKPIMDIRKQYQEVFEKRHGIRLGFMSFYVKAVTEALK
HHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEHHHHHHHHHHHHHHH
RFPEVNASIDGDDIVYHNYFDISIAVSTPRGLVTPVLRDTDKMSLADIERNVRELAIKGR
HCCCCCCCCCCCCEEEEEEEEEEEEEECCCCHHHHHHCCCCCHHHHHHHHHHHHHEEECC
DGKLTVDDMTGGNFTVTNGGVFGSLMSTPILNLPQSAILGMHAIKDRPMAVNGQVEILPM
CCEEEEEECCCCCEEEECCCHHHHHHHCCCCCCCHHHHHHHHHHCCCCEEECCCEEHHHH
MYLALSYDHRIVDGRESVGYLVAIKDFLEDPTRLLLDL
HHHHHCCCCEEECCCCCCCCEEEEHHHHCCHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]