Click here to switch to the map view.

The map label for this gene is nahR [H]

Identifier: 157960946

GI number: 157960946

Start: 1355486

End: 1356382

Strand: Direct

Name: nahR [H]

Synonym: Spea_1118

Alternate gene names: 157960946

Gene position: 1355486-1356382 (Clockwise)

Preceding gene: 157960944

Following gene: 157960956

Centisome position: 26.2

GC content: 43.92

Gene sequence:

>897_bases
ATGGGGGGGGCTTTGAATAGAAATATTTCTGATTTGAATCAAATCAGGTTGTTACTGGATTTAGTTCATACTAAAAACAT
GAGCCGCACCGCACAGCGCTTAGGTAAAACAACCAGTGCTATATCTAAAAACTTGCAGCGACTGCGTGAAGAGCTTTGCG
ACCCCCTCTTTATTAGGCAGCCATCAGGACTAGAGCCGACGACATACGCCTTAACTCTTACCGCTAAACTGACTAATATT
CAAAAGGATATCGATGCAGCCTTCGATTCTGAGTCATTCGATCCTAAGTTATTTAAAGGTAAAATCACCTTAGCTGCGAA
TACGGCGTTAATGCACCAATATCAGGGGGAACTATTACTCGCGTTAACAGAGCAGGCGCCGCTGGCCAATATTGAAATTG
TCCAATGGCAAGAGGATAGTTATCAGAGAATACTCGATGGCAGTATTAATGCAGGCCTACAATTTTTGAATGAGAATTGC
ACTCAATCTATTATGCAGCATGTTCTTCAAAGGCATGAGATTGTGCTAGTCACTGGTGGCAAGCATAGTGCATCAAGCGC
AAGAGAGGCCTTATCATCTCCCTTAGCAGTGCTTAAGATCCATGGTTGGAATGCTGACTCGGTTCGCTTTTCTCGCTACC
TCTATCAGAAGGGGGTAGAGCATAATGTGCGTTTGCAGTGTGAAGATCTTCCTAGCCTATTATCATGCCTTGAGCGCAGT
AATTTTGTCTCTCCGTTACCACGCTTCCTATGTCCAGGTAACTTAAAAGCGCTTACCTTAGATGAGCCGGGTAATGAGAT
AAGCTCAGTGGTGTGTATCCCCTCTACTCATAGAAACGAGCCACTGTATCAATGGCTCGTAGGACTCATTAAATCACTAA
TGCCAGTAAAGTTGTGA

Upstream 100 bases:

>100_bases
TTGCTTGTGATGATAAGTACAATTTTGAATTGCTTGCTGCTAAACAAATTGAACTAACAAGATTTGCTAAGTGTCTATTT
ATACTTTTTGACTTGTTTAA

Downstream 100 bases:

>100_bases
ATATAGACAAGATAGCCTATTGCTTAACGAGTTTATTGGCGATAAACGCCGCTGCGATAGCGACAAAAATGACAGAGAAA
TAGATCATAGTGACTCCGGT

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 298; Mature: 297

Protein sequence:

>298_residues
MGGALNRNISDLNQIRLLLDLVHTKNMSRTAQRLGKTTSAISKNLQRLREELCDPLFIRQPSGLEPTTYALTLTAKLTNI
QKDIDAAFDSESFDPKLFKGKITLAANTALMHQYQGELLLALTEQAPLANIEIVQWQEDSYQRILDGSINAGLQFLNENC
TQSIMQHVLQRHEIVLVTGGKHSASSAREALSSPLAVLKIHGWNADSVRFSRYLYQKGVEHNVRLQCEDLPSLLSCLERS
NFVSPLPRFLCPGNLKALTLDEPGNEISSVVCIPSTHRNEPLYQWLVGLIKSLMPVKL

Sequences:

>Translated_298_residues
MGGALNRNISDLNQIRLLLDLVHTKNMSRTAQRLGKTTSAISKNLQRLREELCDPLFIRQPSGLEPTTYALTLTAKLTNI
QKDIDAAFDSESFDPKLFKGKITLAANTALMHQYQGELLLALTEQAPLANIEIVQWQEDSYQRILDGSINAGLQFLNENC
TQSIMQHVLQRHEIVLVTGGKHSASSAREALSSPLAVLKIHGWNADSVRFSRYLYQKGVEHNVRLQCEDLPSLLSCLERS
NFVSPLPRFLCPGNLKALTLDEPGNEISSVVCIPSTHRNEPLYQWLVGLIKSLMPVKL
>Mature_297_residues
GGALNRNISDLNQIRLLLDLVHTKNMSRTAQRLGKTTSAISKNLQRLREELCDPLFIRQPSGLEPTTYALTLTAKLTNIQ
KDIDAAFDSESFDPKLFKGKITLAANTALMHQYQGELLLALTEQAPLANIEIVQWQEDSYQRILDGSINAGLQFLNENCT
QSIMQHVLQRHEIVLVTGGKHSASSAREALSSPLAVLKIHGWNADSVRFSRYLYQKGVEHNVRLQCEDLPSLLSCLERSN
FVSPLPRFLCPGNLKALTLDEPGNEISSVVCIPSTHRNEPLYQWLVGLIKSLMPVKL

Specific function: Regulates the expression of the naphthalene (nahA-F) and salicylate (nahG-M) metabolism genes [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33283; Mature: 33152

Theoretical pI: Translated: 7.87; Mature: 7.87

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGGALNRNISDLNQIRLLLDLVHTKNMSRTAQRLGKTTSAISKNLQRLREELCDPLFIRQ
CCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHCHHHHHHHHHHHHHHHHHCCCEEEEC
PSGLEPTTYALTLTAKLTNIQKDIDAAFDSESFDPKLFKGKITLAANTALMHQYQGELLL
CCCCCCCEEEEEEEHHHHHHHHHHHHHCCCCCCCCCEEECEEEEEEHHHHHHHHCCCEEE
ALTEQAPLANIEIVQWQEDSYQRILDGSINAGLQFLNENCTQSIMQHVLQRHEIVLVTGG
EEECCCCCCCEEEEEECCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECC
KHSASSAREALSSPLAVLKIHGWNADSVRFSRYLYQKGVEHNVRLQCEDLPSLLSCLERS
CCCHHHHHHHHHCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEHHHHHHHHHHHHC
NFVSPLPRFLCPGNLKALTLDEPGNEISSVVCIPSTHRNEPLYQWLVGLIKSLMPVKL
CCCCHHHHHCCCCCCEEEEECCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
GGALNRNISDLNQIRLLLDLVHTKNMSRTAQRLGKTTSAISKNLQRLREELCDPLFIRQ
CCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHCHHHHHHHHHHHHHHHHHCCCEEEEC
PSGLEPTTYALTLTAKLTNIQKDIDAAFDSESFDPKLFKGKITLAANTALMHQYQGELLL
CCCCCCCEEEEEEEHHHHHHHHHHHHHCCCCCCCCCEEECEEEEEEHHHHHHHHCCCEEE
ALTEQAPLANIEIVQWQEDSYQRILDGSINAGLQFLNENCTQSIMQHVLQRHEIVLVTGG
EEECCCCCCCEEEEEECCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECC
KHSASSAREALSSPLAVLKIHGWNADSVRFSRYLYQKGVEHNVRLQCEDLPSLLSCLERS
CCCHHHHHHHHHCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEHHHHHHHHHHHHC
NFVSPLPRFLCPGNLKALTLDEPGNEISSVVCIPSTHRNEPLYQWLVGLIKSLMPVKL
CCCCHHHHHCCCCCCEEEEECCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2703465; 2848005 [H]