| Definition | Shewanella pealeana ATCC 700345 chromosome, complete genome. |
|---|---|
| Accession | NC_009901 |
| Length | 5,174,581 |
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The map label for this gene is 157960753
Identifier: 157960753
GI number: 157960753
Start: 1133508
End: 1134908
Strand: Direct
Name: 157960753
Synonym: Spea_0925
Alternate gene names: NA
Gene position: 1133508-1134908 (Clockwise)
Preceding gene: 157960752
Following gene: 157960754
Centisome position: 21.91
GC content: 46.82
Gene sequence:
>1401_bases ATGTTGATATTTAAACAGCTACAACGTCTGTTGATGTTATTCACATTGCTCGTTATCGCTGGTTGTGGCGGCGATGACGA TGGTTTTCCTACGGGAGCCTGTGGTGGCCCCGATAATCCATGCCCTGCCTATGCAATGGCTCTAGATATAACACCTGAGC TAAATACGCTGGCACTCAATACAAGCGATAATTATTCGGCAATAGTGACCTACAGTGACGGAACGAGCAAGGATGTGACG CAAGCAGTTACCTGGTCGACGGCTGAACAACAGATAGCCACAGTATCGCAAGGTGGTATCGCATCCGCCTTGGGCGGCGG GCAGACTCAAGTTATGGCCACCTTTGCATCAGAGCTGCAAGGTGGAGAGCCCCTAACCGATATCGCGACTCTAATTGTAA CTGATGCGCCATTAACGCATTTGAGTGTTCGGCCCGGGCAAGCTGAAATATTGGTTGGATTGACGCAAGCATATAGTGCA TTAGCATCGTTTTCTGATGGACATCAGCAAGATGTCACTAATGATGTTAAATGGGGGGTGATGCATAGTGCCATAGCAGG TATATCCAATGAAGTTAACTCGAAAGGGGTTGCGACAGGGCTCAACCAAGGTGTAACACAAGTGAGCGCGAGTTTTAAAC AACAGAGCGCACTGGCAAGCTTGGTTGTTTTAGATGCACAGCCTGCAGCATTAATTATCTTTCCGCTAGATCAAGCTTTA CCTCGAGGAACGAGTCTGCAGTATCAAGCCTATCTGCAACTTGATGACGGTAATAGTATCGATGTCACAGCTCAGTCGAC TTGGCAGACAGCCACACCTGAAATAGCTTCTATCGACAGTAAGGCGTTTCTTACAGGCAATGAACTTGGCATCACAAATG TTAACGCAACGCTTAATTACGCAGATGTGAGCCTTAATGACAGCACAAGCGTTAATGTTATTGCTGCACAACTTGAAGAC TTAGTCGTGACGCCTACAGAAGGTGTGTATCCCAAAGGCACTATGGGAACATATCAAGCCAGCGCATACTTTTCCGATGG TCAAGTTATCGATGTAACTCGCAATGCAACTTGGTCAACATCAAATCAAGCTGTGATCATAATAACGCAAACGGGGGCGA GTGCGGGTAATGCTTTAGCCGCCGAAGTTGGCGAAGCCCGTGTTACTGCTAGCTACGACTCATTAACTGCATCTGCGGAC GCAAAAGTGACCGATGCTGTTGTTATCGAACTTAATATTTCCCCCATGATAAAACTATTCCAGCGGGTCTCAAGCAACCC TATCAAGCCTTCGCAAGCTTCTCTGATCATACAAGTAAAAATGTCACCCTTGAAGCTCGTTGGACAAGCTCAAAGCTTGA TATTGCCGCTGTTGATGAGCAGGGAATTGCTTATACGATAA
Upstream 100 bases:
>100_bases CGGTAATGAAAAACGATACTTCTGAGCATCGCCATGAAAACCGCCGAGTGTTAATACACATCCAATCAACGACATCAGAA ATGAAGCCGGAGATCTAAAT
Downstream 100 bases:
>100_bases AACCGGGGCAGACCCAAATTCAAGCAGCGTTTTTAGGTGAAATAGCTGCGACATCTCTGTTTGTGAAGCAGGTTGAGCTG TTAGAGATACAGGTGACTCC
Product: Ig domain-containing protein
Products: NA
Alternate protein names: Surface Protein; Ig Domain Domain Protein; Ig Domain Protein Group 2 Domain Protein; Ig-Like Repeat-Containing Protein; Protein With A Bacterial Immunoglobulin-Like Domain; YVTN Beta-Propeller Repeat-Containing Protein; Ig-Like Domain-Containing Protein; LigB Lipoprotein; LigB-Like Protein; Subtilisin-Like Serine Protease; Extracellular Serine Protease; Ligc Protein
Number of amino acids: Translated: 466; Mature: 466
Protein sequence:
>466_residues MLIFKQLQRLLMLFTLLVIAGCGGDDDGFPTGACGGPDNPCPAYAMALDITPELNTLALNTSDNYSAIVTYSDGTSKDVT QAVTWSTAEQQIATVSQGGIASALGGGQTQVMATFASELQGGEPLTDIATLIVTDAPLTHLSVRPGQAEILVGLTQAYSA LASFSDGHQQDVTNDVKWGVMHSAIAGISNEVNSKGVATGLNQGVTQVSASFKQQSALASLVVLDAQPAALIIFPLDQAL PRGTSLQYQAYLQLDDGNSIDVTAQSTWQTATPEIASIDSKAFLTGNELGITNVNATLNYADVSLNDSTSVNVIAAQLED LVVTPTEGVYPKGTMGTYQASAYFSDGQVIDVTRNATWSTSNQAVIIITQTGASAGNALAAEVGEARVTASYDSLTASAD AKVTDAVVIELNISPMIKLFQRVSSNPIKPSQASLIIQVKMSPLKLVGQAQSLILPLLMSRELLIR
Sequences:
>Translated_466_residues MLIFKQLQRLLMLFTLLVIAGCGGDDDGFPTGACGGPDNPCPAYAMALDITPELNTLALNTSDNYSAIVTYSDGTSKDVT QAVTWSTAEQQIATVSQGGIASALGGGQTQVMATFASELQGGEPLTDIATLIVTDAPLTHLSVRPGQAEILVGLTQAYSA LASFSDGHQQDVTNDVKWGVMHSAIAGISNEVNSKGVATGLNQGVTQVSASFKQQSALASLVVLDAQPAALIIFPLDQAL PRGTSLQYQAYLQLDDGNSIDVTAQSTWQTATPEIASIDSKAFLTGNELGITNVNATLNYADVSLNDSTSVNVIAAQLED LVVTPTEGVYPKGTMGTYQASAYFSDGQVIDVTRNATWSTSNQAVIIITQTGASAGNALAAEVGEARVTASYDSLTASAD AKVTDAVVIELNISPMIKLFQRVSSNPIKPSQASLIIQVKMSPLKLVGQAQSLILPLLMSRELLIR >Mature_466_residues MLIFKQLQRLLMLFTLLVIAGCGGDDDGFPTGACGGPDNPCPAYAMALDITPELNTLALNTSDNYSAIVTYSDGTSKDVT QAVTWSTAEQQIATVSQGGIASALGGGQTQVMATFASELQGGEPLTDIATLIVTDAPLTHLSVRPGQAEILVGLTQAYSA LASFSDGHQQDVTNDVKWGVMHSAIAGISNEVNSKGVATGLNQGVTQVSASFKQQSALASLVVLDAQPAALIIFPLDQAL PRGTSLQYQAYLQLDDGNSIDVTAQSTWQTATPEIASIDSKAFLTGNELGITNVNATLNYADVSLNDSTSVNVIAAQLED LVVTPTEGVYPKGTMGTYQASAYFSDGQVIDVTRNATWSTSNQAVIIITQTGASAGNALAAEVGEARVTASYDSLTASAD AKVTDAVVIELNISPMIKLFQRVSSNPIKPSQASLIIQVKMSPLKLVGQAQSLILPLLMSRELLIR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 48693; Mature: 48693
Theoretical pI: Translated: 4.09; Mature: 4.09
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLIFKQLQRLLMLFTLLVIAGCGGDDDGFPTGACGGPDNPCPAYAMALDITPELNTLALN CCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCEEEEE TSDNYSAIVTYSDGTSKDVTQAVTWSTAEQQIATVSQGGIASALGGGQTQVMATFASELQ CCCCEEEEEEECCCCCCCHHHHHCCCCHHHHHHHHCCCCCHHHCCCCCHHHHHHHHHHHC GGEPLTDIATLIVTDAPLTHLSVRPGQAEILVGLTQAYSALASFSDGHQQDVTNDVKWGV CCCCHHHHHHHEEECCCCEEEEECCCCEEEEEEHHHHHHHHHHCCCCCHHHCCCCHHHHH MHSAIAGISNEVNSKGVATGLNQGVTQVSASFKQQSALASLVVLDAQPAALIIFPLDQAL HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHEEEEEEECCCCEEEEEECHHCC PRGTSLQYQAYLQLDDGNSIDVTAQSTWQTATPEIASIDSKAFLTGNELGITNVNATLNY CCCCCEEEEEEEEECCCCEEEEEECCCCCCCCCCHHCCCCCEEEECCCEEEEECCCEEEE ADVSLNDSTSVNVIAAQLEDLVVTPTEGVYPKGTMGTYQASAYFSDGQVIDVTRNATWST EEEECCCCCCEEEEEEECCCEEECCCCCCCCCCCCCCEEEEEEECCCEEEEEECCCEECC SNQAVIIITQTGASAGNALAAEVGEARVTASYDSLTASADAKVTDAVVIELNISPMIKLF CCCEEEEEEECCCCCCCCHHHHCCCEEEEECCCCEECCCCCCEEEEEEEEECCHHHHHHH QRVSSNPIKPSQASLIIQVKMSPLKLVGQAQSLILPLLMSRELLIR HHHCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MLIFKQLQRLLMLFTLLVIAGCGGDDDGFPTGACGGPDNPCPAYAMALDITPELNTLALN CCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCEEEEE TSDNYSAIVTYSDGTSKDVTQAVTWSTAEQQIATVSQGGIASALGGGQTQVMATFASELQ CCCCEEEEEEECCCCCCCHHHHHCCCCHHHHHHHHCCCCCHHHCCCCCHHHHHHHHHHHC GGEPLTDIATLIVTDAPLTHLSVRPGQAEILVGLTQAYSALASFSDGHQQDVTNDVKWGV CCCCHHHHHHHEEECCCCEEEEECCCCEEEEEEHHHHHHHHHHCCCCCHHHCCCCHHHHH MHSAIAGISNEVNSKGVATGLNQGVTQVSASFKQQSALASLVVLDAQPAALIIFPLDQAL HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHEEEEEEECCCCEEEEEECHHCC PRGTSLQYQAYLQLDDGNSIDVTAQSTWQTATPEIASIDSKAFLTGNELGITNVNATLNY CCCCCEEEEEEEEECCCCEEEEEECCCCCCCCCCHHCCCCCEEEECCCEEEEECCCEEEE ADVSLNDSTSVNVIAAQLEDLVVTPTEGVYPKGTMGTYQASAYFSDGQVIDVTRNATWST EEEECCCCCCEEEEEEECCCEEECCCCCCCCCCCCCCEEEEEEECCCEEEEEECCCEECC SNQAVIIITQTGASAGNALAAEVGEARVTASYDSLTASADAKVTDAVVIELNISPMIKLF CCCEEEEEEECCCCCCCCHHHHCCCEEEEECCCCEECCCCCCEEEEEEEEECCHHHHHHH QRVSSNPIKPSQASLIIQVKMSPLKLVGQAQSLILPLLMSRELLIR HHHCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA