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The map label for this gene is ypdF [C]

Identifier: 157960750

GI number: 157960750

Start: 1130192

End: 1131409

Strand: Direct

Name: ypdF [C]

Synonym: Spea_0922

Alternate gene names: 157960750

Gene position: 1130192-1131409 (Clockwise)

Preceding gene: 157960749

Following gene: 157960752

Centisome position: 21.84

GC content: 47.54

Gene sequence:

>1218_bases
ATGACCATAGGTGTTGGCGGTTCTACCGCAGAGCAGGAATTAGCAAAGTTAACCGATATGACTCAAGGCGTTGAGGCCAT
TAGTCGTGAAGAGTATCAAGCTCGTATCGCTAAGGCGCAAGCCATCATGAGCGAGCAGGGAATTGCCGCTATTTACCTGA
ATGCAGGCACTAACCTTTACTATTACACCGGCACGCGTTGGTATGCTAGCGAGCGCATGGTGGGGGCAATTCTTCCTGCA
AAGGGCGATGTTGAATATATCGCTCCGGCATTTGAGGTTGATACGTTAAATGGCTACATGGTCATTGGCGGCAAAGTTAA
CACTTGGCAAGAAGATGAAAGCCCATTTGCACTGTTTGGCAATGTATTAGCTAAGATGGGAATTGCATCGGGTGATATCG
GTATCGATGAATCTGCGGCTTTCTTTATCTTCGACGGTGTACGTCAAGAGCACCCACAGTATAACTATGTCAACGCTAAG
CCTGTTACAGCGGGTTGTCGTATGATCAAGTCGGCTGTAGAGCTAAGTCTTCTGCAACGTGCTAAAGATATGACAATGGA
AGTGCATAAAGCGGTAGCACGTATTTTACATGAAGGCATTACCACTAGCGAAGTGGAAGCCTTTATCAATGCGGCGCACA
TTAAGGTTGGTATTCCTGCTGGTTCATACTTCTGTATCGTTCTTTTTGGTGAAGACAGTGCCTACCCGCACGGCGTTAAG
TCACCTAAAGCATTGGATCTTAATGATACCGTATTGATCGATACTGGTTGTCAGCTTCATGGCTATAACTCTGATATTAC
TCGTACTTACGTTTTTGGTGAGCCTAGCCCACGTCAACGTGAGTTGTGGCAGTTTGAGCAAGACTCACAAATTGCTGGCT
TTGAAGCGGCTCAGATTGGCGCAACTTGTGCCAGTGTTGATCGCGCTGCCCGTGATGTGCTTGAAGCGGCTGGTTTTGGC
CCAGGTTACGATGTGCCAGGTCTGCCACACCGTACAGGTCACGGCGTGGGTCTAGATATCCATGAATGGCCATATTTAGT
ACTAAACGATCATACTCCGCTAGAAGCGGGCATGTGTTTTAGTAATGAGCCAATGTTGTGTGTACCGGGTGAATTCGGCG
TGCGCCATGAAGATCACTTCTATATGACAGAGCAAGGCCCAGTGTGGTTCACTAAACCTGCACACTCAATCGATGATCCA
TTTGGTTACGAAGCGTAA

Upstream 100 bases:

>100_bases
GAGTGCCATTGTTTTTAGAACAATAGATAGAGCCTTGTTTGATACTCGCAAGTATCAGGCTTTGCTAGGTTCAAAATTAT
TAAAAGTGAAGGGTAAGCAT

Downstream 100 bases:

>100_bases
TACTCCAGTAACTATAGTGAGACGCCTTGTTATAAGTAACGAGGCATCAATTGTTGTGTGTACCGGGTGAATTCGGCGTA
CGTCATGAAGACCGTTCTCT

Product: peptidase M24

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 405; Mature: 404

Protein sequence:

>405_residues
MTIGVGGSTAEQELAKLTDMTQGVEAISREEYQARIAKAQAIMSEQGIAAIYLNAGTNLYYYTGTRWYASERMVGAILPA
KGDVEYIAPAFEVDTLNGYMVIGGKVNTWQEDESPFALFGNVLAKMGIASGDIGIDESAAFFIFDGVRQEHPQYNYVNAK
PVTAGCRMIKSAVELSLLQRAKDMTMEVHKAVARILHEGITTSEVEAFINAAHIKVGIPAGSYFCIVLFGEDSAYPHGVK
SPKALDLNDTVLIDTGCQLHGYNSDITRTYVFGEPSPRQRELWQFEQDSQIAGFEAAQIGATCASVDRAARDVLEAAGFG
PGYDVPGLPHRTGHGVGLDIHEWPYLVLNDHTPLEAGMCFSNEPMLCVPGEFGVRHEDHFYMTEQGPVWFTKPAHSIDDP
FGYEA

Sequences:

>Translated_405_residues
MTIGVGGSTAEQELAKLTDMTQGVEAISREEYQARIAKAQAIMSEQGIAAIYLNAGTNLYYYTGTRWYASERMVGAILPA
KGDVEYIAPAFEVDTLNGYMVIGGKVNTWQEDESPFALFGNVLAKMGIASGDIGIDESAAFFIFDGVRQEHPQYNYVNAK
PVTAGCRMIKSAVELSLLQRAKDMTMEVHKAVARILHEGITTSEVEAFINAAHIKVGIPAGSYFCIVLFGEDSAYPHGVK
SPKALDLNDTVLIDTGCQLHGYNSDITRTYVFGEPSPRQRELWQFEQDSQIAGFEAAQIGATCASVDRAARDVLEAAGFG
PGYDVPGLPHRTGHGVGLDIHEWPYLVLNDHTPLEAGMCFSNEPMLCVPGEFGVRHEDHFYMTEQGPVWFTKPAHSIDDP
FGYEA
>Mature_404_residues
TIGVGGSTAEQELAKLTDMTQGVEAISREEYQARIAKAQAIMSEQGIAAIYLNAGTNLYYYTGTRWYASERMVGAILPAK
GDVEYIAPAFEVDTLNGYMVIGGKVNTWQEDESPFALFGNVLAKMGIASGDIGIDESAAFFIFDGVRQEHPQYNYVNAKP
VTAGCRMIKSAVELSLLQRAKDMTMEVHKAVARILHEGITTSEVEAFINAAHIKVGIPAGSYFCIVLFGEDSAYPHGVKS
PKALDLNDTVLIDTGCQLHGYNSDITRTYVFGEPSPRQRELWQFEQDSQIAGFEAAQIGATCASVDRAARDVLEAAGFGP
GYDVPGLPHRTGHGVGLDIHEWPYLVLNDHTPLEAGMCFSNEPMLCVPGEFGVRHEDHFYMTEQGPVWFTKPAHSIDDPF
GYEA

Specific function: Unknown

COG id: COG0006

COG function: function code E; Xaa-Pro aminopeptidase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M24B family [H]

Homologues:

Organism=Homo sapiens, GI264681563, Length=167, Percent_Identity=33.5329341317365, Blast_Score=66, Evalue=6e-11,
Organism=Escherichia coli, GI1788728, Length=244, Percent_Identity=32.7868852459016, Blast_Score=111, Evalue=1e-25,
Organism=Escherichia coli, GI1789275, Length=253, Percent_Identity=27.6679841897233, Blast_Score=77, Evalue=1e-15,
Organism=Drosophila melanogaster, GI19920384, Length=284, Percent_Identity=28.5211267605634, Blast_Score=73, Evalue=3e-13,
Organism=Drosophila melanogaster, GI21357079, Length=202, Percent_Identity=28.7128712871287, Blast_Score=67, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000587
- InterPro:   IPR000994
- InterPro:   IPR001131 [H]

Pfam domain/function: PF01321 Creatinase_N; PF00557 Peptidase_M24 [H]

EC number: 3.4.-.- [C]

Molecular weight: Translated: 44252; Mature: 44121

Theoretical pI: Translated: 4.55; Mature: 4.55

Prosite motif: PS00491 PROLINE_PEPTIDASE ; PS00136 SUBTILASE_ASP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTIGVGGSTAEQELAKLTDMTQGVEAISREEYQARIAKAQAIMSEQGIAAIYLNAGTNLY
CEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCEEE
YYTGTRWYASERMVGAILPAKGDVEYIAPAFEVDTLNGYMVIGGKVNTWQEDESPFALFG
EECCCEEEECCCEEEEEECCCCCCEEECCEEEEECCCCEEEECCEECCCCCCCCCHHHHH
NVLAKMGIASGDIGIDESAAFFIFDGVRQEHPQYNYVNAKPVTAGCRMIKSAVELSLLQR
HHHHHHCCCCCCCCCCCCCEEEEEECHHHCCCCCCEECCCCHHHHHHHHHHHHHHHHHHH
AKDMTMEVHKAVARILHEGITTSEVEAFINAAHIKVGIPAGSYFCIVLFGEDSAYPHGVK
HHHHHHHHHHHHHHHHHCCCCHHHHHHHHEEEEEEEECCCCCEEEEEEECCCCCCCCCCC
SPKALDLNDTVLIDTGCQLHGYNSDITRTYVFGEPSPRQRELWQFEQDSQIAGFEAAQIG
CCCEECCCCEEEEECCCEEECCCCCCEEEEEECCCCCCHHHHHCCCCCCCCCCCHHHHHC
ATCASVDRAARDVLEAAGFGPGYDVPGLPHRTGHGVGLDIHEWPYLVLNDHTPLEAGMCF
HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHCCEEEECCCCCCCCCCEE
SNEPMLCVPGEFGVRHEDHFYMTEQGPVWFTKPAHSIDDPFGYEA
CCCCCEEECCCCCCCCCCCEEEECCCCEEEECCCCCCCCCCCCCC
>Mature Secondary Structure 
TIGVGGSTAEQELAKLTDMTQGVEAISREEYQARIAKAQAIMSEQGIAAIYLNAGTNLY
EECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCEEE
YYTGTRWYASERMVGAILPAKGDVEYIAPAFEVDTLNGYMVIGGKVNTWQEDESPFALFG
EECCCEEEECCCEEEEEECCCCCCEEECCEEEEECCCCEEEECCEECCCCCCCCCHHHHH
NVLAKMGIASGDIGIDESAAFFIFDGVRQEHPQYNYVNAKPVTAGCRMIKSAVELSLLQR
HHHHHHCCCCCCCCCCCCCEEEEEECHHHCCCCCCEECCCCHHHHHHHHHHHHHHHHHHH
AKDMTMEVHKAVARILHEGITTSEVEAFINAAHIKVGIPAGSYFCIVLFGEDSAYPHGVK
HHHHHHHHHHHHHHHHHCCCCHHHHHHHHEEEEEEEECCCCCEEEEEEECCCCCCCCCCC
SPKALDLNDTVLIDTGCQLHGYNSDITRTYVFGEPSPRQRELWQFEQDSQIAGFEAAQIG
CCCEECCCCEEEEECCCEEECCCCCCEEEEEECCCCCCHHHHHCCCCCCCCCCCHHHHHC
ATCASVDRAARDVLEAAGFGPGYDVPGLPHRTGHGVGLDIHEWPYLVLNDHTPLEAGMCF
HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHCCEEEECCCCCCCCCCEE
SNEPMLCVPGEFGVRHEDHFYMTEQGPVWFTKPAHSIDDPFGYEA
CCCCCEEECCCCCCCCCCCEEEECCCCEEEECCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA