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The map label for this gene is cph2 [H]

Identifier: 157960736

GI number: 157960736

Start: 1109194

End: 1110411

Strand: Reverse

Name: cph2 [H]

Synonym: Spea_0908

Alternate gene names: 157960736

Gene position: 1110411-1109194 (Counterclockwise)

Preceding gene: 157960737

Following gene: 157960734

Centisome position: 21.46

GC content: 45.57

Gene sequence:

>1218_bases
ATGAAAATTTTACTGATTGAAGATCACTTATTTCAGCGAGAAGCGATGCAAATGCAACTTGAGCTGATCACCTCACCTAA
GATTTCGCTGATTAGAACCGCAGCCTCTGGTGTTGAGGCGCTACAGATAATGGCTGACTTCAAACCTGACATACTGCTGT
GCGATCTAAAAATGCCAGAGATGGATGGCATCACCTTCTTGAGTCACATCAGTGAATTGATGTTTACCGGCTCTATCATT
ATCACCAGTGCCAGCAACCAAATCGTACTCGATACTGTACAAAAAATGTGTATGAGCTATCACTTAAAAGTGATTGGTGC
GATTAGCAAACCAGTAAAGATTAATACCCTAAAAGAGCTATTACACTTGGCCTATGTCGAGAGCTTGATGAACTCAACGT
TCGTCCCCCCAAGCTCAGTCAAGAGTAAAACCTTCACCGAGAAAGAGCTAGAACACGCCCTTGTACAAGGCTGGATAAAA
CCCTACTTCCAACCTTTAGTGGCATTCGATGGCGGTGAGTGGAAATCTTGTGAAGCACTAATTCGCTTTGTTCACCCAAT
CTTGGGAGTGTTGCCGCCAACCAGTTTTCTGCCTCAGTTGAGCAAGATGCATAAAGATGCCGAATTAGCACTATTGAGTA
TCAATTACATCCTGCAGCACCAAGCGGAACTTGCAGGCCGCCCCGTGGCCGTCAACATCAACCCCACGACTTTAATGCAT
AATCACTTCGTCGATAGATTGCTCGATATTGCTAAACAGCAACCAAGCCTATGCAAGCAAGTCTATTTCGAGATCACCGA
ATCAGATGCTTTGATAAATACCGGCAGAGCACTGGAGTCGGCTTCACGCTTAGCGTTGCACGGCTTTAACCTATCCATTG
ATGATTTCGGGACAGGCTACTCATCTCTAACCCTGTTAGACACCTTACCTTTCGATTCACTTAAGGTAGACATGAGCTTT
ATTAGAGCCATGGAAAGCAGCAAAACGGCAGCCGCGATTGTTGAAGCTTGCCTATTGTTGAGTAGTCGACTCGAGCTTAA
GTCGGTAGCCGAAGGCGTAGAAACCCAAGTACTGTGGCAGCAACTGCAGTCATTAGGCTGCACCTTAGCACAAGGCTATT
ACATTGCTGCGCCTATGCCAGTTGAACGTCTAAAGGATTGGCACGAAAGCTGGCAAGTAAAGGTTAGCAAACATCAGCTA
GCGACAGAAATATGCTAG

Upstream 100 bases:

>100_bases
AAACGGCGGCTTCGACTCAAGATATTAAAGTATTAAAGGAATATCTTGTACAGATAGAACAATTAATAGAGCAGATCTCT
AATCAGGTAAACCAGTTAAC

Downstream 100 bases:

>100_bases
TGGAAGGGATAACAATTACATTAAATCTCAGGTTCACTAACTAGAAAGCACTCAAGCGTTCCACTCCAGCTTTAGACTGA
GCCACAAGGGAGTGATTGGG

Product: response regulator receiver modulated diguanylate phosphodiesterase

Products: NA

Alternate protein names: Bacteriophytochrome cph2 [H]

Number of amino acids: Translated: 405; Mature: 405

Protein sequence:

>405_residues
MKILLIEDHLFQREAMQMQLELITSPKISLIRTAASGVEALQIMADFKPDILLCDLKMPEMDGITFLSHISELMFTGSII
ITSASNQIVLDTVQKMCMSYHLKVIGAISKPVKINTLKELLHLAYVESLMNSTFVPPSSVKSKTFTEKELEHALVQGWIK
PYFQPLVAFDGGEWKSCEALIRFVHPILGVLPPTSFLPQLSKMHKDAELALLSINYILQHQAELAGRPVAVNINPTTLMH
NHFVDRLLDIAKQQPSLCKQVYFEITESDALINTGRALESASRLALHGFNLSIDDFGTGYSSLTLLDTLPFDSLKVDMSF
IRAMESSKTAAAIVEACLLLSSRLELKSVAEGVETQVLWQQLQSLGCTLAQGYYIAAPMPVERLKDWHESWQVKVSKHQL
ATEIC

Sequences:

>Translated_405_residues
MKILLIEDHLFQREAMQMQLELITSPKISLIRTAASGVEALQIMADFKPDILLCDLKMPEMDGITFLSHISELMFTGSII
ITSASNQIVLDTVQKMCMSYHLKVIGAISKPVKINTLKELLHLAYVESLMNSTFVPPSSVKSKTFTEKELEHALVQGWIK
PYFQPLVAFDGGEWKSCEALIRFVHPILGVLPPTSFLPQLSKMHKDAELALLSINYILQHQAELAGRPVAVNINPTTLMH
NHFVDRLLDIAKQQPSLCKQVYFEITESDALINTGRALESASRLALHGFNLSIDDFGTGYSSLTLLDTLPFDSLKVDMSF
IRAMESSKTAAAIVEACLLLSSRLELKSVAEGVETQVLWQQLQSLGCTLAQGYYIAAPMPVERLKDWHESWQVKVSKHQL
ATEIC
>Mature_405_residues
MKILLIEDHLFQREAMQMQLELITSPKISLIRTAASGVEALQIMADFKPDILLCDLKMPEMDGITFLSHISELMFTGSII
ITSASNQIVLDTVQKMCMSYHLKVIGAISKPVKINTLKELLHLAYVESLMNSTFVPPSSVKSKTFTEKELEHALVQGWIK
PYFQPLVAFDGGEWKSCEALIRFVHPILGVLPPTSFLPQLSKMHKDAELALLSINYILQHQAELAGRPVAVNINPTTLMH
NHFVDRLLDIAKQQPSLCKQVYFEITESDALINTGRALESASRLALHGFNLSIDDFGTGYSSLTLLDTLPFDSLKVDMSF
IRAMESSKTAAAIVEACLLLSSRLELKSVAEGVETQVLWQQLQSLGCTLAQGYYIAAPMPVERLKDWHESWQVKVSKHQL
ATEIC

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 GGDEF domains [H]

Homologues:

Organism=Escherichia coli, GI87081921, Length=256, Percent_Identity=28.90625, Blast_Score=115, Evalue=6e-27,
Organism=Escherichia coli, GI1788502, Length=230, Percent_Identity=30.8695652173913, Blast_Score=111, Evalue=7e-26,
Organism=Escherichia coli, GI87081845, Length=244, Percent_Identity=29.5081967213115, Blast_Score=106, Evalue=2e-24,
Organism=Escherichia coli, GI1790496, Length=249, Percent_Identity=28.9156626506024, Blast_Score=106, Evalue=3e-24,
Organism=Escherichia coli, GI1786507, Length=256, Percent_Identity=26.5625, Blast_Score=102, Evalue=4e-23,
Organism=Escherichia coli, GI87081980, Length=263, Percent_Identity=30.4182509505703, Blast_Score=101, Evalue=8e-23,
Organism=Escherichia coli, GI87082096, Length=233, Percent_Identity=30.4721030042918, Blast_Score=101, Evalue=8e-23,
Organism=Escherichia coli, GI1788849, Length=249, Percent_Identity=32.1285140562249, Blast_Score=98, Evalue=1e-21,
Organism=Escherichia coli, GI1787541, Length=249, Percent_Identity=28.1124497991968, Blast_Score=97, Evalue=2e-21,
Organism=Escherichia coli, GI87081743, Length=232, Percent_Identity=29.7413793103448, Blast_Score=96, Evalue=4e-21,
Organism=Escherichia coli, GI1787055, Length=251, Percent_Identity=28.6852589641434, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI226510982, Length=255, Percent_Identity=25.4901960784314, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI1787410, Length=171, Percent_Identity=28.6549707602339, Blast_Score=73, Evalue=3e-14,
Organism=Escherichia coli, GI1787487, Length=132, Percent_Identity=28.030303030303, Blast_Score=63, Evalue=3e-11,
Organism=Escherichia coli, GI87082280, Length=223, Percent_Identity=23.7668161434978, Blast_Score=62, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF; PF00360 Phytochrome [H]

EC number: NA

Molecular weight: Translated: 45199; Mature: 45199

Theoretical pI: Translated: 6.19; Mature: 6.19

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50883 EAL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKILLIEDHLFQREAMQMQLELITSPKISLIRTAASGVEALQIMADFKPDILLCDLKMPE
CEEEEECHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCC
MDGITFLSHISELMFTGSIIITSASNQIVLDTVQKMCMSYHLKVIGAISKPVKINTLKEL
CCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHHH
LHLAYVESLMNSTFVPPSSVKSKTFTEKELEHALVQGWIKPYFQPLVAFDGGEWKSCEAL
HHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH
IRFVHPILGVLPPTSFLPQLSKMHKDAELALLSINYILQHQAELAGRPVAVNINPTTLMH
HHHHHHHHHHCCCHHHHHHHHHHCCCHHEEEHHHHHHHHHHHHHCCCCEEEECCCHHHHH
NHFVDRLLDIAKQQPSLCKQVYFEITESDALINTGRALESASRLALHGFNLSIDDFGTGY
HHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHCCHHHHHHHHHEEECCCCEECCCCCCC
SSLTLLDTLPFDSLKVDMSFIRAMESSKTAAAIVEACLLLSSRLELKSVAEGVETQVLWQ
HHEEEEECCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QLQSLGCTLAQGYYIAAPMPVERLKDWHESWQVKVSKHQLATEIC
HHHHHCCCHHCCEEEECCCCHHHHHHHHHHHEEEEHHHHHHHHCC
>Mature Secondary Structure
MKILLIEDHLFQREAMQMQLELITSPKISLIRTAASGVEALQIMADFKPDILLCDLKMPE
CEEEEECHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCC
MDGITFLSHISELMFTGSIIITSASNQIVLDTVQKMCMSYHLKVIGAISKPVKINTLKEL
CCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHHH
LHLAYVESLMNSTFVPPSSVKSKTFTEKELEHALVQGWIKPYFQPLVAFDGGEWKSCEAL
HHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH
IRFVHPILGVLPPTSFLPQLSKMHKDAELALLSINYILQHQAELAGRPVAVNINPTTLMH
HHHHHHHHHHCCCHHHHHHHHHHCCCHHEEEHHHHHHHHHHHHHCCCCEEEECCCHHHHH
NHFVDRLLDIAKQQPSLCKQVYFEITESDALINTGRALESASRLALHGFNLSIDDFGTGY
HHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHCCHHHHHHHHHEEECCCCEECCCCCCC
SSLTLLDTLPFDSLKVDMSFIRAMESSKTAAAIVEACLLLSSRLELKSVAEGVETQVLWQ
HHEEEEECCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QLQSLGCTLAQGYYIAAPMPVERLKDWHESWQVKVSKHQLATEIC
HHHHHCCCHHCCEEEECCCCHHHHHHHHHHHEEEEHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231; 10978170; 11063585 [H]