| Definition | Shewanella pealeana ATCC 700345 chromosome, complete genome. |
|---|---|
| Accession | NC_009901 |
| Length | 5,174,581 |
Click here to switch to the map view.
The map label for this gene is pdxA [H]
Identifier: 157960691
GI number: 157960691
Start: 1060949
End: 1061932
Strand: Reverse
Name: pdxA [H]
Synonym: Spea_0863
Alternate gene names: 157960691
Gene position: 1061932-1060949 (Counterclockwise)
Preceding gene: 157960692
Following gene: 157960690
Centisome position: 20.52
GC content: 47.26
Gene sequence:
>984_bases TTGTCGACTAAACGCATAGCCATCACGCCGGGTGAACCGGCGGGTGTTGGCCCAGATTTAGTGATACAACTAGCTCAGCA GGCTTGGCCTGCTGAGCTAGTCGTTTGTGCTGATCCAGAATTATTACTGTCTCGCGCCAAGAAGCTTGGGCTTTCTATTC AGTTGCGTCCATATCAACCGAATCAACCCCCTAAGGCGCAAGAGGCTGGCACACTGACAATCGTGCCTTTTACCCTAGAG ACTGATTCTGTATGTGGCCAGCTAAATGAAATTAATAGCGCCTATGTCGTCGATACATTAAGATTCGCTGGCGAAAAAAA CATGGTTGGCGAATTCGATGCAGTAGTAACAGGACCCGTTCATAAGGGGATTATCAACCAAGCTGGTATTCCGTTTAGCG GCCACACCGAATATTTTGCCAATCAGGCAAACTGCCAAGATGTGGTAATGATGCTAGCGGCGCCAGGCTTGCAGGTTGCG CTTGTGACAACTCACATACCATTAGCGTATGTGTCAAAAGCCATTACTCGCGACCGTTTGCATCAAATCGTCAAGATTTT ACACAAAGACTTAGTCGAGAAATTCGCGATTGAGTCACCTCGCATCTATGTGTGTGGTTTAAACCCTCATGCTGGCGAGG ACGGTCATTTAGGCAGAGAAGAGATAGATATCATCATCCCTGCACTAAATGAGCTTAGGGAACTCAATATGGATATCGTA GGCCCACTGCCAGCTGATACCCTGTTCCAACCTAAATACTTAGAAGATGCTGACGTCGTACTCGCTATGTACCACGATCA GGGGCTTCCAGTACTAAAATCTAGAGGATTTGGCAGTTCAGTCAACATCACTCTAGGATTACCCTATATAAGAACCTCGG TCGACCATGGTACGGCCTTAGAGCTTGCAGGCACTGGCACTGCAGATATCGGCAGCTTTGTCTGCGCATTAAATAAAGCC ATTGATTTGGCTGCAAAGAATTAG
Upstream 100 bases:
>100_bases GTCGTAAATTTAATGAAGAGTTACAAAACTGGCTAGATGAAATGCGCGCTGAAGCATTTATCGATATATTTGAGCCAGAA ACGAATCGAGGTTAATACTA
Downstream 100 bases:
>100_bases TGATAAAAGTTACCTCATGAGCAATAAAGTACATTTAGGCCACACGGCCAGAAAACGTTTTGGACAAAACTTCTTAACCG ACGAAAATGTGATTAACCGC
Product: 4-hydroxythreonine-4-phosphate dehydrogenase
Products: NA
Alternate protein names: 4-(phosphohydroxy)-L-threonine dehydrogenase [H]
Number of amino acids: Translated: 327; Mature: 326
Protein sequence:
>327_residues MSTKRIAITPGEPAGVGPDLVIQLAQQAWPAELVVCADPELLLSRAKKLGLSIQLRPYQPNQPPKAQEAGTLTIVPFTLE TDSVCGQLNEINSAYVVDTLRFAGEKNMVGEFDAVVTGPVHKGIINQAGIPFSGHTEYFANQANCQDVVMMLAAPGLQVA LVTTHIPLAYVSKAITRDRLHQIVKILHKDLVEKFAIESPRIYVCGLNPHAGEDGHLGREEIDIIIPALNELRELNMDIV GPLPADTLFQPKYLEDADVVLAMYHDQGLPVLKSRGFGSSVNITLGLPYIRTSVDHGTALELAGTGTADIGSFVCALNKA IDLAAKN
Sequences:
>Translated_327_residues MSTKRIAITPGEPAGVGPDLVIQLAQQAWPAELVVCADPELLLSRAKKLGLSIQLRPYQPNQPPKAQEAGTLTIVPFTLE TDSVCGQLNEINSAYVVDTLRFAGEKNMVGEFDAVVTGPVHKGIINQAGIPFSGHTEYFANQANCQDVVMMLAAPGLQVA LVTTHIPLAYVSKAITRDRLHQIVKILHKDLVEKFAIESPRIYVCGLNPHAGEDGHLGREEIDIIIPALNELRELNMDIV GPLPADTLFQPKYLEDADVVLAMYHDQGLPVLKSRGFGSSVNITLGLPYIRTSVDHGTALELAGTGTADIGSFVCALNKA IDLAAKN >Mature_326_residues STKRIAITPGEPAGVGPDLVIQLAQQAWPAELVVCADPELLLSRAKKLGLSIQLRPYQPNQPPKAQEAGTLTIVPFTLET DSVCGQLNEINSAYVVDTLRFAGEKNMVGEFDAVVTGPVHKGIINQAGIPFSGHTEYFANQANCQDVVMMLAAPGLQVAL VTTHIPLAYVSKAITRDRLHQIVKILHKDLVEKFAIESPRIYVCGLNPHAGEDGHLGREEIDIIIPALNELRELNMDIVG PLPADTLFQPKYLEDADVVLAMYHDQGLPVLKSRGFGSSVNITLGLPYIRTSVDHGTALELAGTGTADIGSFVCALNKAI DLAAKN
Specific function: Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP) [H]
COG id: COG1995
COG function: function code H; Pyridoxal phosphate biosynthesis protein
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the pdxA family [H]
Homologues:
Organism=Escherichia coli, GI1786237, Length=323, Percent_Identity=64.0866873065015, Blast_Score=426, Evalue=1e-121,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005255 [H]
Pfam domain/function: PF04166 PdxA [H]
EC number: =1.1.1.262 [H]
Molecular weight: Translated: 35182; Mature: 35051
Theoretical pI: Translated: 5.16; Mature: 5.16
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSTKRIAITPGEPAGVGPDLVIQLAQQAWPAELVVCADPELLLSRAKKLGLSIQLRPYQP CCCCEEEECCCCCCCCCHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHCCCEEEEECCCC NQPPKAQEAGTLTIVPFTLETDSVCGQLNEINSAYVVDTLRFAGEKNMVGEFDAVVTGPV CCCCCCHHCCEEEEEEEEECCHHHHHHHHHCCCHHEEHHHHHCCCCCCCCCCCEEEECCH HKGIINQAGIPFSGHTEYFANQANCQDVVMMLAAPGLQVALVTTHIPLAYVSKAITRDRL HHHHHHCCCCCCCCCHHHHCCCCCHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHH HQIVKILHKDLVEKFAIESPRIYVCGLNPHAGEDGHLGREEIDIIIPALNELRELNMDIV HHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCHHHHHEEEHHHHHHHHCCCCEE GPLPADTLFQPKYLEDADVVLAMYHDQGLPVLKSRGFGSSVNITLGLPYIRTSVDHGTAL CCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEECCCCCCEEEEEEECCHHEECCCCCCEE ELAGTGTADIGSFVCALNKAIDLAAKN EEECCCCHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure STKRIAITPGEPAGVGPDLVIQLAQQAWPAELVVCADPELLLSRAKKLGLSIQLRPYQP CCCEEEECCCCCCCCCHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHCCCEEEEECCCC NQPPKAQEAGTLTIVPFTLETDSVCGQLNEINSAYVVDTLRFAGEKNMVGEFDAVVTGPV CCCCCCHHCCEEEEEEEEECCHHHHHHHHHCCCHHEEHHHHHCCCCCCCCCCCEEEECCH HKGIINQAGIPFSGHTEYFANQANCQDVVMMLAAPGLQVALVTTHIPLAYVSKAITRDRL HHHHHHCCCCCCCCCHHHHCCCCCHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHH HQIVKILHKDLVEKFAIESPRIYVCGLNPHAGEDGHLGREEIDIIIPALNELRELNMDIV HHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCHHHHHEEEHHHHHHHHCCCCEE GPLPADTLFQPKYLEDADVVLAMYHDQGLPVLKSRGFGSSVNITLGLPYIRTSVDHGTAL CCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEECCCCCCEEEEEEECCHHEECCCCCCEE ELAGTGTADIGSFVCALNKAIDLAAKN EEECCCCHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 12368813 [H]