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The map label for this gene is sodB [H]

Identifier: 157825803

GI number: 157825803

Start: 665708

End: 666337

Strand: Direct

Name: sodB [H]

Synonym: A1C_03670

Alternate gene names: 157825803

Gene position: 665708-666337 (Clockwise)

Preceding gene: 157825802

Following gene: 157825804

Centisome position: 54.08

GC content: 33.65

Gene sequence:

>630_bases
ATGACATATTGCAACAAATCTAATCAAACCTCATATCCTTTTATCTTACCTGATTTACCTTATGACAAAGAGAGTTTTAA
ACCACATTTTACTCCCGAGACTTTTGATTATCATTATGGTAAACATCATAATGCTTATGTACAAAATCTAAATAACTTAC
TCAAAGATAAAGAAGAATTACAAAAAAAAGATTTAGAAAAAATAATATACTGGTCGTCTCAAAACTCAAATGCAGCTATT
TTTAATAACGCAGCCCAAATATGGAATCATACTTTTTTTTGGCATTCAATAAAGCCGCATGGCGGAGGTAAGCCAAATGG
TAAAATATTAGAACAGATTAATAAAGATTTCGGTAGTTTTGAAGGATTTTGCGAGCAGTTTAAGCAAGAAGCAGTGGGGC
AGTTCGGTAGCGGCTGGGCATGGCTGGTATATCACGATAATAGGCTACAAATTATAAAAACTGCTAATGCCGGCACACCT
ATAGCAAACGGTATGAAGCCGCTTCTTGCATGTGATGTATGGGAACATGCTTATTATATTGATTATCGTAACAAAAGACC
TGATTATGTGGACATATTTATTAAGCATATGATTAACTGGCAGTTTGTAGAAGATAACTTAATGAAGTAA

Upstream 100 bases:

>100_bases
GCTCCACTCCTCGTCTTGTGAACTCCTTGCTCTTTTTACAGTTGATCTTCGTATACCCGAGACAACAACAAACCTAAAAC
CCTATCTAGGAGAAAATAAC

Downstream 100 bases:

>100_bases
AATTATGCATTTAGAGGATAATTAAATAGACTCAAGAAACTCTTATCGCATATATAGCCTTTAGTGTATGTGGAGCTAAG
TGAGCAATATATTCCGGAAC

Product: superoxide dismutase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 209; Mature: 208

Protein sequence:

>209_residues
MTYCNKSNQTSYPFILPDLPYDKESFKPHFTPETFDYHYGKHHNAYVQNLNNLLKDKEELQKKDLEKIIYWSSQNSNAAI
FNNAAQIWNHTFFWHSIKPHGGGKPNGKILEQINKDFGSFEGFCEQFKQEAVGQFGSGWAWLVYHDNRLQIIKTANAGTP
IANGMKPLLACDVWEHAYYIDYRNKRPDYVDIFIKHMINWQFVEDNLMK

Sequences:

>Translated_209_residues
MTYCNKSNQTSYPFILPDLPYDKESFKPHFTPETFDYHYGKHHNAYVQNLNNLLKDKEELQKKDLEKIIYWSSQNSNAAI
FNNAAQIWNHTFFWHSIKPHGGGKPNGKILEQINKDFGSFEGFCEQFKQEAVGQFGSGWAWLVYHDNRLQIIKTANAGTP
IANGMKPLLACDVWEHAYYIDYRNKRPDYVDIFIKHMINWQFVEDNLMK
>Mature_208_residues
TYCNKSNQTSYPFILPDLPYDKESFKPHFTPETFDYHYGKHHNAYVQNLNNLLKDKEELQKKDLEKIIYWSSQNSNAAIF
NNAAQIWNHTFFWHSIKPHGGGKPNGKILEQINKDFGSFEGFCEQFKQEAVGQFGSGWAWLVYHDNRLQIIKTANAGTPI
ANGMKPLLACDVWEHAYYIDYRNKRPDYVDIFIKHMINWQFVEDNLMK

Specific function: Destroys radicals which are normally produced within the cells and which are toxic to biological systems [H]

COG id: COG0605

COG function: function code P; Superoxide dismutase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the iron/manganese superoxide dismutase family [H]

Homologues:

Organism=Homo sapiens, GI67782307, Length=198, Percent_Identity=43.9393939393939, Blast_Score=153, Evalue=1e-37,
Organism=Homo sapiens, GI67782305, Length=198, Percent_Identity=43.9393939393939, Blast_Score=153, Evalue=1e-37,
Organism=Homo sapiens, GI67782309, Length=197, Percent_Identity=36.5482233502538, Blast_Score=112, Evalue=3e-25,
Organism=Escherichia coli, GI1787946, Length=195, Percent_Identity=52.8205128205128, Blast_Score=219, Evalue=2e-58,
Organism=Escherichia coli, GI1790342, Length=197, Percent_Identity=37.0558375634518, Blast_Score=142, Evalue=2e-35,
Organism=Caenorhabditis elegans, GI17506561, Length=199, Percent_Identity=37.6884422110553, Blast_Score=124, Evalue=5e-29,
Organism=Caenorhabditis elegans, GI17569479, Length=193, Percent_Identity=37.8238341968912, Blast_Score=120, Evalue=3e-28,
Organism=Saccharomyces cerevisiae, GI6321796, Length=196, Percent_Identity=32.6530612244898, Blast_Score=102, Evalue=5e-23,
Organism=Drosophila melanogaster, GI17136812, Length=189, Percent_Identity=36.5079365079365, Blast_Score=110, Evalue=6e-25,

Paralogues:

None

Copy number: 2020 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 20 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). 900 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001189
- InterPro:   IPR019833
- InterPro:   IPR019832
- InterPro:   IPR019831 [H]

Pfam domain/function: PF02777 Sod_Fe_C; PF00081 Sod_Fe_N [H]

EC number: =1.15.1.1 [H]

Molecular weight: Translated: 24592; Mature: 24461

Theoretical pI: Translated: 7.34; Mature: 7.34

Prosite motif: PS00088 SOD_MN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTYCNKSNQTSYPFILPDLPYDKESFKPHFTPETFDYHYGKHHNAYVQNLNNLLKDKEEL
CCCCCCCCCCCCCEEECCCCCCHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
QKKDLEKIIYWSSQNSNAAIFNNAAQIWNHTFFWHSIKPHGGGKPNGKILEQINKDFGSF
HHHHHHHHEEECCCCCCEEEECCHHHHHCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHH
EGFCEQFKQEAVGQFGSGWAWLVYHDNRLQIIKTANAGTPIANGMKPLLACDVWEHAYYI
HHHHHHHHHHHHHCCCCCEEEEEEECCEEEEEEECCCCCCCCCCCCHHHHHHHHHHEEEE
DYRNKRPDYVDIFIKHMINWQFVEDNLMK
EECCCCCCHHHHHHHHHHCCEEECCCCCC
>Mature Secondary Structure 
TYCNKSNQTSYPFILPDLPYDKESFKPHFTPETFDYHYGKHHNAYVQNLNNLLKDKEEL
CCCCCCCCCCCCEEECCCCCCHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
QKKDLEKIIYWSSQNSNAAIFNNAAQIWNHTFFWHSIKPHGGGKPNGKILEQINKDFGSF
HHHHHHHHEEECCCCCCEEEECCHHHHHCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHH
EGFCEQFKQEAVGQFGSGWAWLVYHDNRLQIIKTANAGTPIANGMKPLLACDVWEHAYYI
HHHHHHHHHHHHHCCCCCEEEEEEECCEEEEEEECCCCCCCCCCCCHHHHHHHHHHEEEE
DYRNKRPDYVDIFIKHMINWQFVEDNLMK
EECCCCCCHHHHHHHHHHCCEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11557893 [H]