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The map label for this gene is dapF [H]

Identifier: 157825700

GI number: 157825700

Start: 566521

End: 567333

Strand: Direct

Name: dapF [H]

Synonym: A1C_03130

Alternate gene names: 157825700

Gene position: 566521-567333 (Clockwise)

Preceding gene: 157825692

Following gene: 157825701

Centisome position: 46.02

GC content: 34.32

Gene sequence:

>813_bases
ATGATTAGTAAAATTAATTTTGTAAAAATGCACGGTCTTGGTAATGATTTTGTTATTGTTAACAAACGAGATTTATTAAG
TTCATATGATTTATCGCAGCTAGCCAAAAATATGGCTGATCGTCATACAGGTATCGGTTGCGATCAGTTTATTATTTATG
AAGAGCATAATGATTTTTATGAGATGATTATCTATAACATAGATGGCTCTAGTGCTAAATTATGCGGTAATGCTACAAGA
TGTTTAGCTAAGTTAATTTATCTTGATACTGGAAAAAAAGACATTACCGTAATGGTATGCAATAAAAAATTGCTATGTAA
TGTGGAGGATGAAAATAATATTAGCGTTAATGTAGGAAGTGTTAGTTTTAATGAAGCTTGGATGCCAAGCCGTGATAAAA
TTTGGGAACTCGCAGAGCGTTATATGATTGATTTAAAGGAAACTATTTGTGTTGATATAGGTAATCCGCATTTGGTTATT
TTTAGTAAGTTAGAGCCTCAAGATCAAAAAATTGTCGGTGAAAAATTGCAGGCTAAGGAATTATTCGCGGATGGGGTAAA
CGTTAATTTTGCTGAAGTAAAAGATAATAAAATATACTTATCCGTTTGGGAGCGCGGTGTAGGGTTCACACTTGCTTGCG
GAAGCGGAGCTTGCGGTAGTTTTGCTGCTGGTTTAAAGCTCGGTTTTATCCATGCACCAAGTATGGTGGTATTTAAGCAT
GGCATCCTTACTATGAAAGAAGAAAACGGTAATATAATAATGCAAGGGTCTGCTAAATTAGTTGCTCAAGGGGAGTATTA
TTATGAGCAATAA

Upstream 100 bases:

>100_bases
TGAAATTAGCATAATAGTCTATATTTTTATGTATAATAACTTCATTATAGCAAATTTGCTATAATTTGCTATAATAGAAT
TTCCTAATATGTAAAACATT

Downstream 100 bases:

>100_bases
TTTAAGGCAAGAAGTAATAACATTTGGCTGTAGACTTAATATTTACGAAAGTGAGATAATACGAAAAAACTTGGCATTAT
CTGGTATCGATAATGTGGCA

Product: diaminopimelate epimerase

Products: NA

Alternate protein names: DAP epimerase [H]

Number of amino acids: Translated: 270; Mature: 270

Protein sequence:

>270_residues
MISKINFVKMHGLGNDFVIVNKRDLLSSYDLSQLAKNMADRHTGIGCDQFIIYEEHNDFYEMIIYNIDGSSAKLCGNATR
CLAKLIYLDTGKKDITVMVCNKKLLCNVEDENNISVNVGSVSFNEAWMPSRDKIWELAERYMIDLKETICVDIGNPHLVI
FSKLEPQDQKIVGEKLQAKELFADGVNVNFAEVKDNKIYLSVWERGVGFTLACGSGACGSFAAGLKLGFIHAPSMVVFKH
GILTMKEENGNIIMQGSAKLVAQGEYYYEQ

Sequences:

>Translated_270_residues
MISKINFVKMHGLGNDFVIVNKRDLLSSYDLSQLAKNMADRHTGIGCDQFIIYEEHNDFYEMIIYNIDGSSAKLCGNATR
CLAKLIYLDTGKKDITVMVCNKKLLCNVEDENNISVNVGSVSFNEAWMPSRDKIWELAERYMIDLKETICVDIGNPHLVI
FSKLEPQDQKIVGEKLQAKELFADGVNVNFAEVKDNKIYLSVWERGVGFTLACGSGACGSFAAGLKLGFIHAPSMVVFKH
GILTMKEENGNIIMQGSAKLVAQGEYYYEQ
>Mature_270_residues
MISKINFVKMHGLGNDFVIVNKRDLLSSYDLSQLAKNMADRHTGIGCDQFIIYEEHNDFYEMIIYNIDGSSAKLCGNATR
CLAKLIYLDTGKKDITVMVCNKKLLCNVEDENNISVNVGSVSFNEAWMPSRDKIWELAERYMIDLKETICVDIGNPHLVI
FSKLEPQDQKIVGEKLQAKELFADGVNVNFAEVKDNKIYLSVWERGVGFTLACGSGACGSFAAGLKLGFIHAPSMVVFKH
GILTMKEENGNIIMQGSAKLVAQGEYYYEQ

Specific function: Biosynthesis of lysine from aspartate semialdehyde; sixth step. [C]

COG id: COG0253

COG function: function code E; Diaminopimelate epimerase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the diaminopimelate epimerase family [H]

Homologues:

Organism=Escherichia coli, GI87082334, Length=275, Percent_Identity=34.5454545454545, Blast_Score=145, Evalue=3e-36,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001653
- InterPro:   IPR018510 [H]

Pfam domain/function: PF01678 DAP_epimerase [H]

EC number: =5.1.1.7 [H]

Molecular weight: Translated: 30191; Mature: 30191

Theoretical pI: Translated: 5.66; Mature: 5.66

Prosite motif: PS01326 DAP_EPIMERASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.0 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
6.7 %Cys+Met (Translated Protein)
3.0 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
6.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MISKINFVKMHGLGNDFVIVNKRDLLSSYDLSQLAKNMADRHTGIGCDQFIIYEEHNDFY
CCCCEEEEEEECCCCCEEEEECHHHHCCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCEE
EMIIYNIDGSSAKLCGNATRCLAKLIYLDTGKKDITVMVCNKKLLCNVEDENNISVNVGS
EEEEEEECCCCCEECCHHHHHHHHHHEEECCCCEEEEEEECCEEEEEECCCCCEEEEECC
VSFNEAWMPSRDKIWELAERYMIDLKETICVDIGNPHLVIFSKLEPQDQKIVGEKLQAKE
EEECCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCEEEEECCCCCCHHHHHHHHHHHH
LFADGVNVNFAEVKDNKIYLSVWERGVGFTLACGSGACGSFAAGLKLGFIHAPSMVVFKH
HHHCCCCEEEEEEECCEEEEEEECCCCCEEEEECCCCCCCHHCCEEEEEEECCCEEEEEC
GILTMKEENGNIIMQGSAKLVAQGEYYYEQ
CEEEEEECCCCEEEECCCEEEECCCEEECC
>Mature Secondary Structure
MISKINFVKMHGLGNDFVIVNKRDLLSSYDLSQLAKNMADRHTGIGCDQFIIYEEHNDFY
CCCCEEEEEEECCCCCEEEEECHHHHCCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCEE
EMIIYNIDGSSAKLCGNATRCLAKLIYLDTGKKDITVMVCNKKLLCNVEDENNISVNVGS
EEEEEEECCCCCEECCHHHHHHHHHHEEECCCCEEEEEEECCEEEEEECCCCCEEEEECC
VSFNEAWMPSRDKIWELAERYMIDLKETICVDIGNPHLVIFSKLEPQDQKIVGEKLQAKE
EEECCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCEEEEECCCCCCHHHHHHHHHHHH
LFADGVNVNFAEVKDNKIYLSVWERGVGFTLACGSGACGSFAAGLKLGFIHAPSMVVFKH
HHHCCCCEEEEEEECCEEEEEEECCCCCEEEEECCCCCCCHHCCEEEEEEECCCEEEEEC
GILTMKEENGNIIMQGSAKLVAQGEYYYEQ
CEEEEEECCCCEEEECCCEEEECCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA