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The map label for this gene is rbn [C]

Identifier: 157373109

GI number: 157373109

Start: 5404792

End: 5405682

Strand: Reverse

Name: rbn [C]

Synonym: Spro_4878

Alternate gene names: 157373109

Gene position: 5405682-5404792 (Counterclockwise)

Preceding gene: 157373110

Following gene: 157373108

Centisome position: 99.21

GC content: 55.56

Gene sequence:

>891_bases
ATGTCATTTTTCCGCCGCAAGAAGCTGCCTTCTGCGATCAAACCCGGCGTCACCTTTGGGCGGCTGCTGATCAAACGCGT
CGATAGCGATGGCCTGACTATGTTGGCAGGCCATTTGGCTTACGTTTCCCTACTGTCGCTGGTGCCACTGGTGACCGTGG
TGTTCGCGCTGTTTGCCGCCTTCCCGATGTTCTCCGATATCAGTGTCCAACTGAAGAGCTTTATCTTCTCCAACTTCATG
CCGGCCGCCGGCAACGTGATTCAAAGTTATCTGGAGCAGTTTGTCGCCAACTCCAACAAGATGACCGCCGTCGGCACTTG
CGGGCTGATTGTCACCGCGCTGTTGTTGATCTCCTCGGTGGACAGCGTGCTCAATACCATCTGGCGCAGCAAAAATAAGC
GTCCAATCGTGTTTTCTTTCGCGGTGTACTGGATGGTACTGACCCTGGGCCCGCTGTTGGTCGGTGCCAGCATGGCGATC
AGCTCCTATTTGCTGTCGCTCAACTGGTTGGCGCAGAGCGGTGTCAACAGCCTGGTGGATCAGGTACTGCGTATATTTCC
GCTGATCCTGTCATGGATATCCTTCTGGCTGCTGTATTGCATTGTGCCGACGGTGCGGGTGCCACCCAAGGATGCACTGA
TCGGTGCGCTGGTGGCCGGGGTGCTGTTTGAGCTGGGCAAGAAGGGTTTTGCCTTGTACATCACCATGTTCCCGTCTTAC
CAGCTGATTTACGGCGTGCTGGCGGTGATCCCCATTTTATTCCTCTGGGTCTACTGGAGCTGGTGTATCGTGTTACTCGG
TGCGGAAATCACGGTGACCATTGGGGAATACCGCGACTACCGCCAACAGAAGGCGGAACAACAGGCTCAGCCACCAGAAG
GGCAGTTATGA

Upstream 100 bases:

>100_bases
GGGGTGCACGTGACCGATCCTGACGTGGTGCCGGCTTATTTTGCCCAATGACCGCAAAGGGTTAAGCTTAAGGCGTACAA
ACTGACATCAAGGAGTGGCT

Downstream 100 bases:

>100_bases
TTGCGTTAATTCAGCGGGTATTAAATGCCAGCGTCACGGTCGAAGGTCAGACAGTAGGCAACATCGGTCCAGGTTTGTTA
GTGTTATTGGGCGTGGAACA

Product: ribonuclease BN

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 296; Mature: 295

Protein sequence:

>296_residues
MSFFRRKKLPSAIKPGVTFGRLLIKRVDSDGLTMLAGHLAYVSLLSLVPLVTVVFALFAAFPMFSDISVQLKSFIFSNFM
PAAGNVIQSYLEQFVANSNKMTAVGTCGLIVTALLLISSVDSVLNTIWRSKNKRPIVFSFAVYWMVLTLGPLLVGASMAI
SSYLLSLNWLAQSGVNSLVDQVLRIFPLILSWISFWLLYCIVPTVRVPPKDALIGALVAGVLFELGKKGFALYITMFPSY
QLIYGVLAVIPILFLWVYWSWCIVLLGAEITVTIGEYRDYRQQKAEQQAQPPEGQL

Sequences:

>Translated_296_residues
MSFFRRKKLPSAIKPGVTFGRLLIKRVDSDGLTMLAGHLAYVSLLSLVPLVTVVFALFAAFPMFSDISVQLKSFIFSNFM
PAAGNVIQSYLEQFVANSNKMTAVGTCGLIVTALLLISSVDSVLNTIWRSKNKRPIVFSFAVYWMVLTLGPLLVGASMAI
SSYLLSLNWLAQSGVNSLVDQVLRIFPLILSWISFWLLYCIVPTVRVPPKDALIGALVAGVLFELGKKGFALYITMFPSY
QLIYGVLAVIPILFLWVYWSWCIVLLGAEITVTIGEYRDYRQQKAEQQAQPPEGQL
>Mature_295_residues
SFFRRKKLPSAIKPGVTFGRLLIKRVDSDGLTMLAGHLAYVSLLSLVPLVTVVFALFAAFPMFSDISVQLKSFIFSNFMP
AAGNVIQSYLEQFVANSNKMTAVGTCGLIVTALLLISSVDSVLNTIWRSKNKRPIVFSFAVYWMVLTLGPLLVGASMAIS
SYLLSLNWLAQSGVNSLVDQVLRIFPLILSWISFWLLYCIVPTVRVPPKDALIGALVAGVLFELGKKGFALYITMFPSYQ
LIYGVLAVIPILFLWVYWSWCIVLLGAEITVTIGEYRDYRQQKAEQQAQPPEGQL

Specific function: 3' To 5' Exoribonuclease Necessary For 3'Maturation Of tRNA Molecules. [C]

COG id: COG1295

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0761 family

Homologues:

Organism=Escherichia coli, GI1790319, Length=287, Percent_Identity=71.4285714285714, Blast_Score=426, Evalue=1e-121,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y4878_SERP5 (A8GLI0)

Other databases:

- EMBL:   CP000826
- RefSeq:   YP_001481098.1
- STRING:   A8GLI0
- GeneID:   5602849
- GenomeReviews:   CP000826_GR
- KEGG:   spe:Spro_4878
- eggNOG:   COG1295
- HOGENOM:   HBG451793
- OMA:   FLWIYIS
- ProtClustDB:   PRK01637
- BioCyc:   SPRO399741:SPRO_4878-MONOMER
- HAMAP:   MF_00672
- InterPro:   IPR017039
- InterPro:   IPR004664
- PIRSF:   PIRSF035875
- TIGRFAMs:   TIGR00765

Pfam domain/function: PF03631 Ribonuclease_BN

EC number: 3.1.-.- [C]

Molecular weight: Translated: 32864; Mature: 32732

Theoretical pI: Translated: 9.85; Mature: 9.85

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x126086dc)-; HASH(0x12707238)-; HASH(0x123d14cc)-; HASH(0x12a73414)-; HASH(0x125c635c)-; HASH(0x12a70dd0)-; HASH(0x12a4424c)-;

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSFFRRKKLPSAIKPGVTFGRLLIKRVDSDGLTMLAGHLAYVSLLSLVPLVTVVFALFAA
CCCHHHHCCCHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FPMFSDISVQLKSFIFSNFMPAAGNVIQSYLEQFVANSNKMTAVGTCGLIVTALLLISSV
HCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHH
DSVLNTIWRSKNKRPIVFSFAVYWMVLTLGPLLVGASMAISSYLLSLNWLAQSGVNSLVD
HHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QVLRIFPLILSWISFWLLYCIVPTVRVPPKDALIGALVAGVLFELGKKGFALYITMFPSY
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCH
QLIYGVLAVIPILFLWVYWSWCIVLLGAEITVTIGEYRDYRQQKAEQQAQPPEGQL
HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEEHHHHHHHHHHHHHHHCCCCCCCH
>Mature Secondary Structure 
SFFRRKKLPSAIKPGVTFGRLLIKRVDSDGLTMLAGHLAYVSLLSLVPLVTVVFALFAA
CCHHHHCCCHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FPMFSDISVQLKSFIFSNFMPAAGNVIQSYLEQFVANSNKMTAVGTCGLIVTALLLISSV
HCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHH
DSVLNTIWRSKNKRPIVFSFAVYWMVLTLGPLLVGASMAISSYLLSLNWLAQSGVNSLVD
HHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QVLRIFPLILSWISFWLLYCIVPTVRVPPKDALIGALVAGVLFELGKKGFALYITMFPSY
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCH
QLIYGVLAVIPILFLWVYWSWCIVLLGAEITVTIGEYRDYRQQKAEQQAQPPEGQL
HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEEHHHHHHHHHHHHHHHCCCCCCCH

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA