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The map label for this gene is yfcU [H]

Identifier: 157372955

GI number: 157372955

Start: 5217798

End: 5220332

Strand: Reverse

Name: yfcU [H]

Synonym: Spro_4723

Alternate gene names: 157372955

Gene position: 5220332-5217798 (Counterclockwise)

Preceding gene: 157372956

Following gene: 157372954

Centisome position: 95.81

GC content: 60.28

Gene sequence:

>2535_bases
ATGGTGTTTATTCCTGCAAGGACGCGGTTTCGTATTCGGCTGTTGAGGGTCTGTATTTGTCTGGCGATGGGGTTTTCCGC
GCAGCTGACTTATGCCGATGACGGTATTCAGTTTAATACCGACGTGCTGGATGTGAATGACCGGAAAAATATCGATCTGA
GCCAGTTTTCCCGCAGTGGCTACATGATGCCGGGCCGTTATAGCCTGACGGTACATATTAATAAAAATGAGCTGCCGGAA
CAGAACATCTCTTTCTATCCGCCGGACGATGACCCGAAAGGCAGCCAAGCCTGTCTGTCACCTACCCTGGTGGATCAACT
GGGGCTGAAGGGAGAGGCGCAGAAAGCGCTGACCTGGTGGCACCAGGACGAATGTCTGGATATCTCCAGTTTGAAGGGGA
TGGAAGCCCGTGGCGATCTGGCCACTGCGGCACTGTACCTGAGCATTCCCCAGGCTTATCTGGAGTACGCCTCGGCGGAC
TGGGACCCGCCTTCGCGTTGGGATGAAGGTATTCCCGGGCTGTTGTTTGACTACAACCTTAATGGCCAGACTCAGTACCA
GCAGCGGGATGGTTCGCAGAGCCATAGCTTGAGCGGCAACGGCGTAGCCGGCGCCAACCTGGGTGCCTGGCGGCTGCGCG
CCGACTGGCAGGGGCAGCTAAACCGCCAGACTGGTCGCGGGCAGGGTACCGACCAGCAGTTGGACTGGAGCCGCTATTAC
GCCTACCGGGCGCTGCCGGCACTGCGTTCGCGGCTGACGCTGGGGGAGGATTACCTCAACTCCGGCATGTTCGACAGCTT
CCGCTTCAGCGGCGCTAGCCTGGTGTCGGACGACAACATGCTGCCGCCGAACCTGCGTGGCTATGCGCCGGAGGTTGCAG
GTGTGGCGAAGACTAATGCCAAGGTGACCATCAGCCAGCAGGGCCGGGTAATTTACGAAACCCAGGTGGCAGCAGGACCG
TTCCGCATTCAGGACATCAACGATGCGGTGTCCGGCGAACTGGAGGTGCGGGTGGAAGAACAGGACGGCAGCGTGCAGGC
ATTCAAGATGAACACCGCCAGCATTCCGTACCTGACCCGGCCGGGCTCAGTGCGCTACAAGTTTGCCGCAGGGCGTCCGT
CGGACTGGCAGCATCATACTGACGGCCCGTTGTTCGGCACCGGAGAGTTTTCCTGGGGGGTGAGCAACGGGTGGTCACTG
TACGGCGGTGTGCTGAGCGGTGGCGATTATAACGCGGCGTCGTTGGGTATCGGCCGCGACCTGATGGCGCTGGGAGCGTT
GTCGTTTGACGCCACCCAGTCGCGGGCGCGTTTGCCGCAGCAGGACGGCACGCTGAGCGGCGGCTCATACCGCCTGAGCT
ATTCGAAGAGCTTTGACGAGTTGGACAGCCAGGTGACCTTCGCCGGTTACCGCTTCTCGGAACAAGACTTTATGAGCATG
AGCGAGTACCTGGATGCACGCCATGAGGGCCGCCGGATGGGCAATAACAAGGAGATGTACACCATCACCTTTAGCAAGCA
GTTCCGCGATGCCGGGGTCAGTTTATATCTGAACTACGACCACCAGACCTACTGGGACCGGCCGGTGAATGACCGCTATA
ACCTGATGATGTCGCGTTACTTCGACATCGGCCGGTTCAAGAACCTGAGCCTGTCGCTGTCCGGTTACCGTAACAAATAC
AACGGCAGCAACGACGACGGTATGTACCTGTCGTTGACGATGCCGTGGGGCAGCGGTGCCAACATCAGCTACAACACCGC
GGTGAACCGTAACGACACCACTCATCGGGTGGGATATTACGACCGGGTTGACGAACACAACAACTACCAGCTGAGCGTGG
GCAGTTCGCGCGGCGGCGCCAATCTGAGCGGTTATTACAACCACGAGGGTGATCTTGCTCAGATGAGCGCCAACGCCAGC
TACCAGGAAGGCAGTTACAGTGCGCTGGGCTTCTCTGCTCAGGGCGGCGCGACGTTGACGACTCAAGGCGGCGCACTGCA
CCGCATCGGCATGCCGGGTGCGACTCGCCTGCTGCTGGACACCGGCGGCGTGGCCGGGGTGCCGGTGCGTGGCTACGGCA
GCACCAGCGACACCAACAGGTTCGGCAAGGCGGTGGTGACGGACGTGAGCAACTACTACCGCAACCAGGCCAGCATTGAT
CTGAACAAGCTGGGCGATAACGCCGAGGCCACCAAATCGGTGGTGCAGGCCACCCTGACCGAGGGCGCGATCGGTTACCG
CAAATTTGACGTGATCGCCGGGGAAAAGGCGATGGCGGTGATCACCCTGGCAGATGGCAGTACGCCGCCGTTCGGCGCCA
CGGTGCTGAACGCCAGCAAACAAGAAACAGGGATAGTGAACGACGGCGGTAGCGTTTATCTGAGCGGCATTCGGGCCGGT
GACCGTATGACGGTGCACTGGAGCGGTGCGGCGCAGTGCGCCATCAACCTGCCGAAAGTGCTGCCGGAAAGTACGCTGAG
CAACCTGCTGTTGCCGTGCCAGACGCTGCCGGCGGATGAGTCAGACGCAACCTAA

Upstream 100 bases:

>100_bases
AGCCAGTCATTGCGGGCCGGAGTCTATTCTTCCGCTGTGCGTTTCAAACTGGATTATTACTGACGCGGATAAAAATTATT
AAATAACAGGGTTGATGGCT

Downstream 100 bases:

>100_bases
GCGCAGACACCCTATTTGAATCAGCAAGAGAGATTTTTTATGAAAACGCATTTTGTCATCAACAAACAGTGCCTGACCAC
CGCCACCCTGCTGGGCGCAT

Product: fimbrial biogenesis outer membrane usher protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 844; Mature: 844

Protein sequence:

>844_residues
MVFIPARTRFRIRLLRVCICLAMGFSAQLTYADDGIQFNTDVLDVNDRKNIDLSQFSRSGYMMPGRYSLTVHINKNELPE
QNISFYPPDDDPKGSQACLSPTLVDQLGLKGEAQKALTWWHQDECLDISSLKGMEARGDLATAALYLSIPQAYLEYASAD
WDPPSRWDEGIPGLLFDYNLNGQTQYQQRDGSQSHSLSGNGVAGANLGAWRLRADWQGQLNRQTGRGQGTDQQLDWSRYY
AYRALPALRSRLTLGEDYLNSGMFDSFRFSGASLVSDDNMLPPNLRGYAPEVAGVAKTNAKVTISQQGRVIYETQVAAGP
FRIQDINDAVSGELEVRVEEQDGSVQAFKMNTASIPYLTRPGSVRYKFAAGRPSDWQHHTDGPLFGTGEFSWGVSNGWSL
YGGVLSGGDYNAASLGIGRDLMALGALSFDATQSRARLPQQDGTLSGGSYRLSYSKSFDELDSQVTFAGYRFSEQDFMSM
SEYLDARHEGRRMGNNKEMYTITFSKQFRDAGVSLYLNYDHQTYWDRPVNDRYNLMMSRYFDIGRFKNLSLSLSGYRNKY
NGSNDDGMYLSLTMPWGSGANISYNTAVNRNDTTHRVGYYDRVDEHNNYQLSVGSSRGGANLSGYYNHEGDLAQMSANAS
YQEGSYSALGFSAQGGATLTTQGGALHRIGMPGATRLLLDTGGVAGVPVRGYGSTSDTNRFGKAVVTDVSNYYRNQASID
LNKLGDNAEATKSVVQATLTEGAIGYRKFDVIAGEKAMAVITLADGSTPPFGATVLNASKQETGIVNDGGSVYLSGIRAG
DRMTVHWSGAAQCAINLPKVLPESTLSNLLLPCQTLPADESDAT

Sequences:

>Translated_844_residues
MVFIPARTRFRIRLLRVCICLAMGFSAQLTYADDGIQFNTDVLDVNDRKNIDLSQFSRSGYMMPGRYSLTVHINKNELPE
QNISFYPPDDDPKGSQACLSPTLVDQLGLKGEAQKALTWWHQDECLDISSLKGMEARGDLATAALYLSIPQAYLEYASAD
WDPPSRWDEGIPGLLFDYNLNGQTQYQQRDGSQSHSLSGNGVAGANLGAWRLRADWQGQLNRQTGRGQGTDQQLDWSRYY
AYRALPALRSRLTLGEDYLNSGMFDSFRFSGASLVSDDNMLPPNLRGYAPEVAGVAKTNAKVTISQQGRVIYETQVAAGP
FRIQDINDAVSGELEVRVEEQDGSVQAFKMNTASIPYLTRPGSVRYKFAAGRPSDWQHHTDGPLFGTGEFSWGVSNGWSL
YGGVLSGGDYNAASLGIGRDLMALGALSFDATQSRARLPQQDGTLSGGSYRLSYSKSFDELDSQVTFAGYRFSEQDFMSM
SEYLDARHEGRRMGNNKEMYTITFSKQFRDAGVSLYLNYDHQTYWDRPVNDRYNLMMSRYFDIGRFKNLSLSLSGYRNKY
NGSNDDGMYLSLTMPWGSGANISYNTAVNRNDTTHRVGYYDRVDEHNNYQLSVGSSRGGANLSGYYNHEGDLAQMSANAS
YQEGSYSALGFSAQGGATLTTQGGALHRIGMPGATRLLLDTGGVAGVPVRGYGSTSDTNRFGKAVVTDVSNYYRNQASID
LNKLGDNAEATKSVVQATLTEGAIGYRKFDVIAGEKAMAVITLADGSTPPFGATVLNASKQETGIVNDGGSVYLSGIRAG
DRMTVHWSGAAQCAINLPKVLPESTLSNLLLPCQTLPADESDAT
>Mature_844_residues
MVFIPARTRFRIRLLRVCICLAMGFSAQLTYADDGIQFNTDVLDVNDRKNIDLSQFSRSGYMMPGRYSLTVHINKNELPE
QNISFYPPDDDPKGSQACLSPTLVDQLGLKGEAQKALTWWHQDECLDISSLKGMEARGDLATAALYLSIPQAYLEYASAD
WDPPSRWDEGIPGLLFDYNLNGQTQYQQRDGSQSHSLSGNGVAGANLGAWRLRADWQGQLNRQTGRGQGTDQQLDWSRYY
AYRALPALRSRLTLGEDYLNSGMFDSFRFSGASLVSDDNMLPPNLRGYAPEVAGVAKTNAKVTISQQGRVIYETQVAAGP
FRIQDINDAVSGELEVRVEEQDGSVQAFKMNTASIPYLTRPGSVRYKFAAGRPSDWQHHTDGPLFGTGEFSWGVSNGWSL
YGGVLSGGDYNAASLGIGRDLMALGALSFDATQSRARLPQQDGTLSGGSYRLSYSKSFDELDSQVTFAGYRFSEQDFMSM
SEYLDARHEGRRMGNNKEMYTITFSKQFRDAGVSLYLNYDHQTYWDRPVNDRYNLMMSRYFDIGRFKNLSLSLSGYRNKY
NGSNDDGMYLSLTMPWGSGANISYNTAVNRNDTTHRVGYYDRVDEHNNYQLSVGSSRGGANLSGYYNHEGDLAQMSANAS
YQEGSYSALGFSAQGGATLTTQGGALHRIGMPGATRLLLDTGGVAGVPVRGYGSTSDTNRFGKAVVTDVSNYYRNQASID
LNKLGDNAEATKSVVQATLTEGAIGYRKFDVIAGEKAMAVITLADGSTPPFGATVLNASKQETGIVNDGGSVYLSGIRAG
DRMTVHWSGAAQCAINLPKVLPESTLSNLLLPCQTLPADESDAT

Specific function: Involved in the export and assembly of a fimbrial subunit across the outer membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fimbrial export usher family [H]

Homologues:

Organism=Escherichia coli, GI87081778, Length=833, Percent_Identity=38.8955582232893, Blast_Score=534, Evalue=1e-152,
Organism=Escherichia coli, GI1790772, Length=874, Percent_Identity=30.3203661327231, Blast_Score=333, Evalue=2e-92,
Organism=Escherichia coli, GI1789533, Length=876, Percent_Identity=29.4520547945205, Blast_Score=297, Evalue=2e-81,
Organism=Escherichia coli, GI1786332, Length=849, Percent_Identity=29.9175500588928, Blast_Score=293, Evalue=5e-80,
Organism=Escherichia coli, GI1787172, Length=848, Percent_Identity=29.3632075471698, Blast_Score=291, Evalue=2e-79,
Organism=Escherichia coli, GI1786744, Length=879, Percent_Identity=28.4414106939704, Blast_Score=281, Evalue=9e-77,
Organism=Escherichia coli, GI1788427, Length=804, Percent_Identity=25.7462686567164, Blast_Score=211, Evalue=1e-55,
Organism=Escherichia coli, GI1789610, Length=829, Percent_Identity=24.9698431845597, Blast_Score=106, Evalue=7e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000015
- InterPro:   IPR018030 [H]

Pfam domain/function: PF00577 Usher [H]

EC number: NA

Molecular weight: Translated: 92466; Mature: 92466

Theoretical pI: Translated: 5.44; Mature: 5.44

Prosite motif: PS01151 FIMBRIAL_USHER

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVFIPARTRFRIRLLRVCICLAMGFSAQLTYADDGIQFNTDVLDVNDRKNIDLSQFSRSG
CEEECCCCHHHHHHHHHHHHHHCCCCEEEEEECCCEEECCEEEECCCCCCCCHHHHCCCC
YMMPGRYSLTVHINKNELPEQNISFYPPDDDPKGSQACLSPTLVDQLGLKGEAQKALTWW
CCCCCEEEEEEEECCCCCCCCCCEECCCCCCCCCCCHHCCHHHHHHHCCCCCCCHHHEEE
HQDECLDISSLKGMEARGDLATAALYLSIPQAYLEYASADWDPPSRWDEGIPGLLFDYNL
CCCCCCCHHHCCCCCCCCCCEEEEEEECCCHHHHHHHCCCCCCCHHHHCCCCCEEEEECC
NGQTQYQQRDGSQSHSLSGNGVAGANLGAWRLRADWQGQLNRQTGRGQGTDQQLDWSRYY
CCCCHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHH
AYRALPALRSRLTLGEDYLNSGMFDSFRFSGASLVSDDNMLPPNLRGYAPEVAGVAKTNA
HHHHHHHHHHHHCCCHHHHCCCCCCHHCCCCCEEECCCCCCCCCCCCCCCCCCCEEECCC
KVTISQQGRVIYETQVAAGPFRIQDINDAVSGELEVRVEEQDGSVQAFKMNTASIPYLTR
EEEEECCCCEEEEEEECCCCEEEEECCCCCCCEEEEEEECCCCCEEEEEECCCCCCEEEC
PGSVRYKFAAGRPSDWQHHTDGPLFGTGEFSWGVSNGWSLYGGVLSGGDYNAASLGIGRD
CCCEEEEEECCCCCCCCCCCCCCEEECCCCCCCCCCCCEEECCEECCCCCCCEECCCCHH
LMALGALSFDATQSRARLPQQDGTLSGGSYRLSYSKSFDELDSQVTFAGYRFSEQDFMSM
HHHHHCCCCCCCHHHHCCCCCCCCCCCCEEEEEECCCHHHHCCEEEEEEEEECHHHHHHH
SEYLDARHEGRRMGNNKEMYTITFSKQFRDAGVSLYLNYDHQTYWDRPVNDRYNLMMSRY
HHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCEEEEEEECCCEECCCCCCCHHHHHHHHH
FDIGRFKNLSLSLSGYRNKYNGSNDDGMYLSLTMPWGSGANISYNTAVNRNDTTHRVGYY
HCCCCCCCEEEEEECCCCCCCCCCCCCEEEEEECCCCCCCCEEEECEECCCCCCEECCCH
DRVDEHNNYQLSVGSSRGGANLSGYYNHEGDLAQMSANASYQEGSYSALGFSAQGGATLT
HCCCCCCCEEEEECCCCCCCCCCEEECCCCCEEEEECCCCCCCCCCEEEEEECCCCEEEE
TQGGALHRIGMPGATRLLLDTGGVAGVPVRGYGSTSDTNRFGKAVVTDVSNYYRNQASID
ECCCEEEEECCCCCEEEEEECCCCCCCEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCEE
LNKLGDNAEATKSVVQATLTEGAIGYRKFDVIAGEKAMAVITLADGSTPPFGATVLNASK
HHHCCCCHHHHHHHHHHHHHCCCCCEEEEEEEECCCEEEEEEEECCCCCCCCEEEECCCC
QETGIVNDGGSVYLSGIRAGDRMTVHWSGAAQCAINLPKVLPESTLSNLLLPCQTLPADE
CCCCEEECCCCEEEEEEECCCEEEEEECCCCEEEECCCHHCCHHHHHHHCCCCCCCCCCC
SDAT
CCCC
>Mature Secondary Structure
MVFIPARTRFRIRLLRVCICLAMGFSAQLTYADDGIQFNTDVLDVNDRKNIDLSQFSRSG
CEEECCCCHHHHHHHHHHHHHHCCCCEEEEEECCCEEECCEEEECCCCCCCCHHHHCCCC
YMMPGRYSLTVHINKNELPEQNISFYPPDDDPKGSQACLSPTLVDQLGLKGEAQKALTWW
CCCCCEEEEEEEECCCCCCCCCCEECCCCCCCCCCCHHCCHHHHHHHCCCCCCCHHHEEE
HQDECLDISSLKGMEARGDLATAALYLSIPQAYLEYASADWDPPSRWDEGIPGLLFDYNL
CCCCCCCHHHCCCCCCCCCCEEEEEEECCCHHHHHHHCCCCCCCHHHHCCCCCEEEEECC
NGQTQYQQRDGSQSHSLSGNGVAGANLGAWRLRADWQGQLNRQTGRGQGTDQQLDWSRYY
CCCCHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHH
AYRALPALRSRLTLGEDYLNSGMFDSFRFSGASLVSDDNMLPPNLRGYAPEVAGVAKTNA
HHHHHHHHHHHHCCCHHHHCCCCCCHHCCCCCEEECCCCCCCCCCCCCCCCCCCEEECCC
KVTISQQGRVIYETQVAAGPFRIQDINDAVSGELEVRVEEQDGSVQAFKMNTASIPYLTR
EEEEECCCCEEEEEEECCCCEEEEECCCCCCCEEEEEEECCCCCEEEEEECCCCCCEEEC
PGSVRYKFAAGRPSDWQHHTDGPLFGTGEFSWGVSNGWSLYGGVLSGGDYNAASLGIGRD
CCCEEEEEECCCCCCCCCCCCCCEEECCCCCCCCCCCCEEECCEECCCCCCCEECCCCHH
LMALGALSFDATQSRARLPQQDGTLSGGSYRLSYSKSFDELDSQVTFAGYRFSEQDFMSM
HHHHHCCCCCCCHHHHCCCCCCCCCCCCEEEEEECCCHHHHCCEEEEEEEEECHHHHHHH
SEYLDARHEGRRMGNNKEMYTITFSKQFRDAGVSLYLNYDHQTYWDRPVNDRYNLMMSRY
HHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCEEEEEEECCCEECCCCCCCHHHHHHHHH
FDIGRFKNLSLSLSGYRNKYNGSNDDGMYLSLTMPWGSGANISYNTAVNRNDTTHRVGYY
HCCCCCCCEEEEEECCCCCCCCCCCCCEEEEEECCCCCCCCEEEECEECCCCCCEECCCH
DRVDEHNNYQLSVGSSRGGANLSGYYNHEGDLAQMSANASYQEGSYSALGFSAQGGATLT
HCCCCCCCEEEEECCCCCCCCCCEEECCCCCEEEEECCCCCCCCCCEEEEEECCCCEEEE
TQGGALHRIGMPGATRLLLDTGGVAGVPVRGYGSTSDTNRFGKAVVTDVSNYYRNQASID
ECCCEEEEECCCCCEEEEEECCCCCCCEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCEE
LNKLGDNAEATKSVVQATLTEGAIGYRKFDVIAGEKAMAVITLADGSTPPFGATVLNASK
HHHCCCCHHHHHHHHHHHHHCCCCCEEEEEEEECCCEEEEEEEECCCCCCCCEEEECCCC
QETGIVNDGGSVYLSGIRAGDRMTVHWSGAAQCAINLPKVLPESTLSNLLLPCQTLPADE
CCCCEEECCCCEEEEEEECCCEEEEEECCCCEEEECCCHHCCHHHHHHHCCCCCCCCCCC
SDAT
CCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503 [H]