| Definition | Serratia proteamaculans 568 chromosome, complete genome. |
|---|---|
| Accession | NC_009832 |
| Length | 5,448,853 |
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The map label for this gene is kduD [H]
Identifier: 157372939
GI number: 157372939
Start: 5201903
End: 5202676
Strand: Reverse
Name: kduD [H]
Synonym: Spro_4707
Alternate gene names: 157372939
Gene position: 5202676-5201903 (Counterclockwise)
Preceding gene: 157372940
Following gene: 157372938
Centisome position: 95.48
GC content: 55.04
Gene sequence:
>774_bases ATGAAACAGGACGTTTTAACTCAGTATTTTTCATTACAGGGCCGGACCGGCATTGTTACCGGCGCATCATCCGGTATTGG GCGCGGCATTGCTCATTTGCTGGCAGATGCCGGGGCACGGGTATTCAACTTCAGTCTGGAAGCCACGCAGACTACCGGCA TTGATTATGCATTGAACCCCGGAGTGGTTGATATACAAGTGGATATTACCGATCGCGAACAATTACAGGCCGCAGTCGAT AGGGTCGCGGCTGATGGGGCGATCGACTTCCTCATTAACAACGCAGGCATTACCAAGCGTGTGCGCGCCGAACAGGTTGA TGAAGCCTGGTGGAGGAAAATTCACCAGATTAACGTTGATGCCGTATTCTTCCTGTCGCAACTTTGTTTCCCGCATTTGA CCCGCTCGGCGTATATCGGCCGTATCGTCAATATTTCCTCAATGGCGGCGCATCTGGGTTTTAGCGAGGTGGTGCCCTAT TGCTCGACCAAGGCAGCGGTCACTGGCATGACCCGTGGGTTGGCTGTGGAATGGGCGCAGGAAAACATCCGCGTCAATTC GGTGGCGCCGGGTTGGATCAAGACCAATATGACGCAGGTGGTCGCCGATCCGCAGCGGTTGGAACGTATTATTAACCGGA TGCCGCTGCACCGTTACGGCCATCCGCGTGAAGAACTGGGTGCCATGGTGTGGTTTTTGGTCAGTGAGGCCTCGCGTTAC ATCACCGGGCAGGATTTTGCCGTGGACGGGGGGGCGCTGAGCTATGGCTTCTGA
Upstream 100 bases:
>100_bases ATGACCATTGACGGCGGCTACGCTTTTCCGCGCTCTGGTGCAGGCTGGGGCTTTAATTTCAACCCGGCATCTCTGACAGA AATCAAATAGGGACAGGGCG
Downstream 100 bases:
>100_bases AATGAAGGTATTAGTGTGCATCAAACCGGGCCAACTGAGCCAACAGCGGCGGCCAATACCGCTGCCGGGGACTGGAGAAG TCCTGCTGAAAATGTGCGCT
Product: short-chain dehydrogenase/reductase SDR
Products: NA
Alternate protein names: 2-keto-3-deoxygluconate 5-dehydrogenase; 2-keto-3-deoxygluconate oxidoreductase; KDG oxidoreductase [H]
Number of amino acids: Translated: 257; Mature: 257
Protein sequence:
>257_residues MKQDVLTQYFSLQGRTGIVTGASSGIGRGIAHLLADAGARVFNFSLEATQTTGIDYALNPGVVDIQVDITDREQLQAAVD RVAADGAIDFLINNAGITKRVRAEQVDEAWWRKIHQINVDAVFFLSQLCFPHLTRSAYIGRIVNISSMAAHLGFSEVVPY CSTKAAVTGMTRGLAVEWAQENIRVNSVAPGWIKTNMTQVVADPQRLERIINRMPLHRYGHPREELGAMVWFLVSEASRY ITGQDFAVDGGALSYGF
Sequences:
>Translated_257_residues MKQDVLTQYFSLQGRTGIVTGASSGIGRGIAHLLADAGARVFNFSLEATQTTGIDYALNPGVVDIQVDITDREQLQAAVD RVAADGAIDFLINNAGITKRVRAEQVDEAWWRKIHQINVDAVFFLSQLCFPHLTRSAYIGRIVNISSMAAHLGFSEVVPY CSTKAAVTGMTRGLAVEWAQENIRVNSVAPGWIKTNMTQVVADPQRLERIINRMPLHRYGHPREELGAMVWFLVSEASRY ITGQDFAVDGGALSYGF >Mature_257_residues MKQDVLTQYFSLQGRTGIVTGASSGIGRGIAHLLADAGARVFNFSLEATQTTGIDYALNPGVVDIQVDITDREQLQAAVD RVAADGAIDFLINNAGITKRVRAEQVDEAWWRKIHQINVDAVFFLSQLCFPHLTRSAYIGRIVNISSMAAHLGFSEVVPY CSTKAAVTGMTRGLAVEWAQENIRVNSVAPGWIKTNMTQVVADPQRLERIINRMPLHRYGHPREELGAMVWFLVSEASRY ITGQDFAVDGGALSYGF
Specific function: Catalyzes the reduction of 2,5-diketo-3-deoxygluconate (DKII or 4,6-dihydroxy-2,5-dioxohexanoate) into 2-keto-3- deoxygluconate (KDG or 2-dehydro-3-deoxygluconate) with a concomitant oxidation of NADH [H]
COG id: COG1028
COG function: function code IQR; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI7705925, Length=241, Percent_Identity=32.7800829875519, Blast_Score=117, Evalue=8e-27, Organism=Homo sapiens, GI32483357, Length=265, Percent_Identity=32.4528301886792, Blast_Score=112, Evalue=3e-25, Organism=Homo sapiens, GI15277342, Length=259, Percent_Identity=33.5907335907336, Blast_Score=112, Evalue=4e-25, Organism=Homo sapiens, GI59889578, Length=229, Percent_Identity=33.1877729257642, Blast_Score=110, Evalue=2e-24, Organism=Homo sapiens, GI19923817, Length=256, Percent_Identity=32.421875, Blast_Score=108, Evalue=4e-24, Organism=Homo sapiens, GI5031737, Length=251, Percent_Identity=33.8645418326693, Blast_Score=102, Evalue=3e-22, Organism=Homo sapiens, GI10190704, Length=248, Percent_Identity=32.6612903225806, Blast_Score=97, Evalue=1e-20, Organism=Homo sapiens, GI126723750, Length=264, Percent_Identity=28.7878787878788, Blast_Score=91, Evalue=1e-18, Organism=Homo sapiens, GI40254992, Length=242, Percent_Identity=31.8181818181818, Blast_Score=90, Evalue=2e-18, Organism=Homo sapiens, GI33667109, Length=201, Percent_Identity=35.8208955223881, Blast_Score=89, Evalue=3e-18, Organism=Homo sapiens, GI31542939, Length=210, Percent_Identity=29.0476190476191, Blast_Score=89, Evalue=3e-18, Organism=Homo sapiens, GI4503301, Length=256, Percent_Identity=28.515625, Blast_Score=83, Evalue=2e-16, Organism=Homo sapiens, GI66933014, Length=246, Percent_Identity=27.6422764227642, Blast_Score=82, Evalue=4e-16, Organism=Homo sapiens, GI142976729, Length=215, Percent_Identity=25.5813953488372, Blast_Score=76, Evalue=4e-14, Organism=Homo sapiens, GI224922801, Length=172, Percent_Identity=31.3953488372093, Blast_Score=75, Evalue=7e-14, Organism=Homo sapiens, GI109715829, Length=239, Percent_Identity=26.7782426778243, Blast_Score=74, Evalue=1e-13, Organism=Homo sapiens, GI7706318, Length=196, Percent_Identity=28.5714285714286, Blast_Score=72, Evalue=5e-13, Organism=Homo sapiens, GI4504503, Length=205, Percent_Identity=27.8048780487805, Blast_Score=72, Evalue=7e-13, Organism=Homo sapiens, GI210032110, Length=196, Percent_Identity=23.9795918367347, Blast_Score=69, Evalue=4e-12, Organism=Homo sapiens, GI4504505, Length=210, Percent_Identity=28.5714285714286, Blast_Score=68, Evalue=7e-12, Organism=Homo sapiens, GI19743808, Length=210, Percent_Identity=26.6666666666667, Blast_Score=65, Evalue=7e-11, Organism=Escherichia coli, GI1789208, Length=248, Percent_Identity=39.5161290322581, Blast_Score=172, Evalue=1e-44, Organism=Escherichia coli, GI1790717, Length=259, Percent_Identity=35.5212355212355, Blast_Score=151, Evalue=3e-38, Organism=Escherichia coli, GI1787335, Length=243, Percent_Identity=33.7448559670782, Blast_Score=137, Evalue=5e-34, Organism=Escherichia coli, GI87082160, Length=256, Percent_Identity=35.546875, Blast_Score=135, Evalue=2e-33, Organism=Escherichia coli, GI87082100, Length=256, Percent_Identity=33.203125, Blast_Score=119, Evalue=2e-28, Organism=Escherichia coli, GI1788459, Length=246, Percent_Identity=32.520325203252, Blast_Score=111, Evalue=5e-26, Organism=Escherichia coli, GI1787905, Length=253, Percent_Identity=33.201581027668, Blast_Score=110, Evalue=7e-26, Organism=Escherichia coli, GI2367175, Length=246, Percent_Identity=35.3658536585366, Blast_Score=110, Evalue=1e-25, Organism=Escherichia coli, GI1786812, Length=251, Percent_Identity=29.8804780876494, Blast_Score=96, Evalue=3e-21, Organism=Escherichia coli, GI1789378, Length=250, Percent_Identity=31.6, Blast_Score=87, Evalue=1e-18, Organism=Escherichia coli, GI2367365, Length=241, Percent_Identity=29.045643153527, Blast_Score=87, Evalue=1e-18, Organism=Escherichia coli, GI1787526, Length=262, Percent_Identity=30.1526717557252, Blast_Score=74, Evalue=8e-15, Organism=Escherichia coli, GI1789057, Length=260, Percent_Identity=24.2307692307692, Blast_Score=68, Evalue=7e-13, Organism=Caenorhabditis elegans, GI17555706, Length=243, Percent_Identity=33.3333333333333, Blast_Score=129, Evalue=1e-30, Organism=Caenorhabditis elegans, GI25147288, Length=243, Percent_Identity=32.9218106995885, Blast_Score=125, Evalue=1e-29, Organism=Caenorhabditis elegans, GI17561402, Length=250, Percent_Identity=34, Blast_Score=115, Evalue=2e-26, Organism=Caenorhabditis elegans, GI115534694, Length=242, Percent_Identity=33.8842975206612, Blast_Score=115, Evalue=2e-26, Organism=Caenorhabditis elegans, GI17560676, Length=249, Percent_Identity=31.7269076305221, Blast_Score=115, Evalue=2e-26, Organism=Caenorhabditis elegans, GI71994600, Length=255, Percent_Identity=33.7254901960784, Blast_Score=107, Evalue=5e-24, Organism=Caenorhabditis elegans, GI72000259, Length=265, Percent_Identity=34.7169811320755, Blast_Score=103, Evalue=7e-23, Organism=Caenorhabditis elegans, GI17563726, Length=262, Percent_Identity=34.7328244274809, Blast_Score=103, Evalue=8e-23, Organism=Caenorhabditis elegans, GI71994604, Length=252, Percent_Identity=34.1269841269841, Blast_Score=103, Evalue=1e-22, Organism=Caenorhabditis elegans, GI17562910, Length=259, Percent_Identity=33.2046332046332, Blast_Score=100, Evalue=7e-22, Organism=Caenorhabditis elegans, GI17560220, Length=262, Percent_Identity=31.6793893129771, Blast_Score=100, Evalue=7e-22, Organism=Caenorhabditis elegans, GI17560332, Length=258, Percent_Identity=32.5581395348837, Blast_Score=100, Evalue=8e-22, Organism=Caenorhabditis elegans, GI17538182, Length=254, Percent_Identity=30.7086614173228, Blast_Score=99, Evalue=2e-21, Organism=Caenorhabditis elegans, GI17559104, Length=263, Percent_Identity=30.7984790874525, Blast_Score=98, Evalue=5e-21, Organism=Caenorhabditis elegans, GI17538480, Length=275, Percent_Identity=31.2727272727273, Blast_Score=95, Evalue=3e-20, Organism=Caenorhabditis elegans, GI17562904, Length=261, Percent_Identity=33.3333333333333, Blast_Score=95, Evalue=3e-20, Organism=Caenorhabditis elegans, GI17562906, Length=263, Percent_Identity=30.4182509505703, Blast_Score=94, Evalue=7e-20, Organism=Caenorhabditis elegans, GI17560150, Length=262, Percent_Identity=29.7709923664122, Blast_Score=93, Evalue=1e-19, Organism=Caenorhabditis elegans, GI17562990, Length=260, Percent_Identity=31.1538461538462, Blast_Score=91, Evalue=4e-19, Organism=Caenorhabditis elegans, GI17551412, Length=259, Percent_Identity=30.8880308880309, Blast_Score=91, Evalue=5e-19, Organism=Caenorhabditis elegans, GI17531453, Length=259, Percent_Identity=30.1158301158301, Blast_Score=91, Evalue=6e-19, Organism=Caenorhabditis elegans, GI17562908, Length=263, Percent_Identity=30.7984790874525, Blast_Score=90, Evalue=1e-18, Organism=Caenorhabditis elegans, GI193204405, Length=263, Percent_Identity=31.5589353612167, Blast_Score=88, Evalue=4e-18, Organism=Caenorhabditis elegans, GI17538486, Length=263, Percent_Identity=30.7984790874525, Blast_Score=88, Evalue=4e-18, Organism=Caenorhabditis elegans, GI17565030, Length=258, Percent_Identity=32.1705426356589, Blast_Score=86, Evalue=3e-17, Organism=Caenorhabditis elegans, GI193203117, Length=199, Percent_Identity=28.1407035175879, Blast_Score=84, Evalue=9e-17, Organism=Caenorhabditis elegans, GI193203115, Length=197, Percent_Identity=28.4263959390863, Blast_Score=83, Evalue=1e-16, Organism=Caenorhabditis elegans, GI17544670, Length=268, Percent_Identity=25.3731343283582, Blast_Score=79, Evalue=2e-15, Organism=Caenorhabditis elegans, GI17536651, Length=251, Percent_Identity=27.0916334661355, Blast_Score=75, Evalue=4e-14, Organism=Caenorhabditis elegans, GI17564282, Length=194, Percent_Identity=29.8969072164948, Blast_Score=72, Evalue=2e-13, Organism=Caenorhabditis elegans, GI17536025, Length=253, Percent_Identity=26.0869565217391, Blast_Score=72, Evalue=4e-13, Organism=Caenorhabditis elegans, GI71982365, Length=190, Percent_Identity=28.9473684210526, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI17568967, Length=206, Percent_Identity=30.0970873786408, Blast_Score=69, Evalue=3e-12, Organism=Caenorhabditis elegans, GI17561272, Length=251, Percent_Identity=27.8884462151394, Blast_Score=67, Evalue=9e-12, Organism=Saccharomyces cerevisiae, GI6322227, Length=214, Percent_Identity=26.1682242990654, Blast_Score=78, Evalue=1e-15, Organism=Saccharomyces cerevisiae, GI6322861, Length=241, Percent_Identity=26.1410788381743, Blast_Score=75, Evalue=1e-14, Organism=Saccharomyces cerevisiae, GI6324126, Length=192, Percent_Identity=28.6458333333333, Blast_Score=71, Evalue=2e-13, Organism=Saccharomyces cerevisiae, GI6322226, Length=188, Percent_Identity=29.7872340425532, Blast_Score=70, Evalue=4e-13, Organism=Saccharomyces cerevisiae, GI6323882, Length=202, Percent_Identity=30.1980198019802, Blast_Score=69, Evalue=6e-13, Organism=Drosophila melanogaster, GI21355319, Length=251, Percent_Identity=31.8725099601594, Blast_Score=113, Evalue=1e-25, Organism=Drosophila melanogaster, GI24639444, Length=245, Percent_Identity=32.2448979591837, Blast_Score=112, Evalue=3e-25, Organism=Drosophila melanogaster, GI23397609, Length=247, Percent_Identity=32.7935222672065, Blast_Score=112, Evalue=3e-25, Organism=Drosophila melanogaster, GI21357041, Length=250, Percent_Identity=34, Blast_Score=108, Evalue=3e-24, Organism=Drosophila melanogaster, GI24643142, Length=241, Percent_Identity=32.7800829875519, Blast_Score=107, Evalue=7e-24, Organism=Drosophila melanogaster, GI28571526, Length=250, Percent_Identity=32, Blast_Score=103, Evalue=2e-22, Organism=Drosophila melanogaster, GI24644339, Length=253, Percent_Identity=28.8537549407115, Blast_Score=92, Evalue=3e-19, Organism=Drosophila melanogaster, GI24644337, Length=172, Percent_Identity=35.4651162790698, Blast_Score=87, Evalue=8e-18, Organism=Drosophila melanogaster, GI281364892, Length=197, Percent_Identity=30.4568527918782, Blast_Score=86, Evalue=3e-17, Organism=Drosophila melanogaster, GI21357673, Length=253, Percent_Identity=28.0632411067194, Blast_Score=80, Evalue=1e-15, Organism=Drosophila melanogaster, GI17737361, Length=222, Percent_Identity=29.2792792792793, Blast_Score=77, Evalue=8e-15, Organism=Drosophila melanogaster, GI18859837, Length=190, Percent_Identity=28.9473684210526, Blast_Score=77, Evalue=9e-15, Organism=Drosophila melanogaster, GI281364494, Length=202, Percent_Identity=29.7029702970297, Blast_Score=75, Evalue=4e-14, Organism=Drosophila melanogaster, GI21358495, Length=198, Percent_Identity=28.7878787878788, Blast_Score=75, Evalue=5e-14, Organism=Drosophila melanogaster, GI24640492, Length=196, Percent_Identity=28.5714285714286, Blast_Score=72, Evalue=5e-13, Organism=Drosophila melanogaster, GI24640442, Length=202, Percent_Identity=28.2178217821782, Blast_Score=71, Evalue=5e-13, Organism=Drosophila melanogaster, GI116007236, Length=195, Percent_Identity=28.2051282051282, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI161076933, Length=189, Percent_Identity=29.1005291005291, Blast_Score=67, Evalue=2e-11, Organism=Drosophila melanogaster, GI24584748, Length=189, Percent_Identity=29.1005291005291, Blast_Score=67, Evalue=2e-11, Organism=Drosophila melanogaster, GI24641232, Length=219, Percent_Identity=28.310502283105, Blast_Score=66, Evalue=2e-11, Organism=Drosophila melanogaster, GI221510726, Length=132, Percent_Identity=30.3030303030303, Blast_Score=64, Evalue=7e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011286 - InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: =1.1.1.127 [H]
Molecular weight: Translated: 28243; Mature: 28243
Theoretical pI: Translated: 6.80; Mature: 6.80
Prosite motif: PS00061 ADH_SHORT
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKQDVLTQYFSLQGRTGIVTGASSGIGRGIAHLLADAGARVFNFSLEATQTTGIDYALNP CCHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHCCCEEEEEEEEECEECCCCEEECC GVVDIQVDITDREQLQAAVDRVAADGAIDFLINNAGITKRVRAEQVDEAWWRKIHQINVD CEEEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCHH AVFFLSQLCFPHLTRSAYIGRIVNISSMAAHLGFSEVVPYCSTKAAVTGMTRGLAVEWAQ HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCHHHHHHHHCCCEEEEHH ENIRVNSVAPGWIKTNMTQVVADPQRLERIINRMPLHRYGHPREELGAMVWFLVSEASRY CCEEEECCCCCHHHCCHHHHHCCHHHHHHHHHHCCHHHCCCCHHHHHHHHHHHHHHHHHH ITGQDFAVDGGALSYGF CCCCCEEECCCEECCCC >Mature Secondary Structure MKQDVLTQYFSLQGRTGIVTGASSGIGRGIAHLLADAGARVFNFSLEATQTTGIDYALNP CCHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHCCCEEEEEEEEECEECCCCEEECC GVVDIQVDITDREQLQAAVDRVAADGAIDFLINNAGITKRVRAEQVDEAWWRKIHQINVD CEEEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCHH AVFFLSQLCFPHLTRSAYIGRIVNISSMAAHLGFSEVVPYCSTKAAVTGMTRGLAVEWAQ HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCHHHHHHHHCCCEEEEHH ENIRVNSVAPGWIKTNMTQVVADPQRLERIINRMPLHRYGHPREELGAMVWFLVSEASRY CCEEEECCCCCHHHCCHHHHHCCHHHHHHHHHHCCHHHCCCCHHHHHHHHHHHHHHHHHH ITGQDFAVDGGALSYGF CCCCCEEECCCEECCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9278503; 2836407; 1766386 [H]