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The map label for this gene is pmfC [H]

Identifier: 157372905

GI number: 157372905

Start: 5163201

End: 5165687

Strand: Direct

Name: pmfC [H]

Synonym: Spro_4673

Alternate gene names: 157372905

Gene position: 5163201-5165687 (Clockwise)

Preceding gene: 157372904

Following gene: 157372906

Centisome position: 94.76

GC content: 58.42

Gene sequence:

>2487_bases
ATGACGTCATTACTGACACGGAAAAAAATACCCCTCACCGTCATTCTATCTTTCCTCTGGGTGCATTCGGCTTTTTCCGC
CACGGAATTTAATACCGACGTATTAGATATTGGCGATCGCAGCAAAGTGGATTTATCGCGTTTTTCCGACGCCGATTACG
TCATGCCCGGTGCCTATCTGCTGGATATCAAGATCAACCAGAAAACCCTGCCGCAGCGCAGCATCCAGTATTACCCGTCG
CCGGACCAAAAGGATCGTTCCCGTGTCTGTCTGCCGCCGGATCTGATAGAGAAAATGGCGCTGAAAGAAGAAGTCGTCAA
AAAAATCACCCTGTGGCACGACAACAGCTGCGCCGATATCAGCGGCATCAAAGGGGCGACCATTTCCGACCGCATCGGCG
GGGGCGTGCTGGCGATCACTATTCCACAGGCCTGGATGAAATATTCCGATCCGGACTGGACGCCGCCGGAACAGTGGGAT
GACGGCATCCCTGGTTTGTTGCTGGACTACAGCATCAGCGGCCAGGTCGGTAAGCAAAGCCACAATAACAACACCGCAGA
AAACCTCAGCAGCTACGGGACGGTCGGCGCCAACCTGGGTGCCTGGCGTCTGCGCGCCGATTATCAGGCCACCTACAATC
AGCAGGCCGGTCAGCGCGACAGCAATTTCGACTGGAACCAGATTTACGCCTATCGTGCACTGCCGATGCAGGCTGCCAAA
CTGACGCTCGGCGAAATCTTCCTCGACTCGGGCGTGTTCGACTCCTACCGCTTCACCGGCCTTAACCTGGCCAGCGACGA
GCGTATGCTGCCGCCAAACCTGCAGGGTTATGCACCGGAAGTGCGCGGCATTGCCAAAAGCAACGCCAAGATCACCGTGT
CGCAAGAAGGCCGCACGCTGTACGAAACCACCGTGCCCGCCGGGCCGTTCGCCATTCAGGATCTCAACAGTTCGGTACGC
GGTCGGCTGGATGTGAAGGTAGAAGAGCAGGACGGCAGCGTATCGACCTTCCAGGTAGACACCGCCACCATTCCTTACCT
GACGCGCCCCGGCTATGTCCGCTACAACGTCGCCGTGGGCAAGCCCTCGGCTTACGATCACCGAACGCAAGGGCCGCTAT
TCTCCGCCAGTGATTTCTCCTGGGGATTAACCAGCGCCTGGTCGCTGTACGGCGGCGCGTTGCTTGGCGGCGATTACAAC
GCCTGGGCACTCGGCCTGGGTCGTGACCTGAACGTGTTTGGCGCCATGTCGGTGGACGTGACGCAGTCTATCGCCCGCTT
GCCCAATGAGCCGACCGCCAGCGGCCTGTCGTTCAAGGTCAACTATGCCAAGCGGTTTGATGAGATGAACAGCCAGATCA
CCTTTGCCGGCTACCGCTTCTCACAGCGCAAATTCATGAACATGTCGCAATATCTGCAGGAACGCTACAACGATTACGAC
GAGCGCTACGACGGACGGCAAAAAGAGCTGTACACCATTACCGCCAGCAAAACCTTTATGGCGGAAGACAGCGCCAAGGC
GATCACCGCTTACCTGACCTATTCGCACCAAACCTATTGGGATGCCAGGGCGCAGGATCGTTACGGGTTGTCTGCCAGTA
AACTGTTCAACGTCGGCAATGTCAGCAACATCACCGCCTCGCTGTCGGCCTATCGCACCACTTATCACGGCCGCACCGAC
GACAGTGTGATGGTGAATTTCAGCGTGCCGATTGGCGATCGCCGTCGGGTAGGCTACTCGTTGCAAACCAGCAACAGCGA
CGTGACGCAGATGGCGTCCTACAACGACTACACCGATCCGAACAACACCTGGCAGGTCAGCGGTGGCTTTAACCAGTCAG
GCAAATCACTGGCCCGTGGTTACTACAGCCATAACGCTTCGTTTGGTTCGCTCAACGCCAGCGCCTCTTATCAACAGGAC
AGTTATTCGTCGATCGGCGGTACCTTCCGCAGTGGTATTACCGCCACCCGACACGGCATAGCCGCACACCAGAACTCCAG
CAACGGCGGCAGCCGGATGATGCTCGATACCGACGGCATTGCCGGGGTGCCAATCAACAACGGCCGCGCCTACAGCAACC
GTTTCGGCCTGGCGGTGATCTCCGACATCACCAGCTACTACAACACCGACACCCGCATCGACGTCAATACGTTGGCGGAC
GACGTGGAGGCCACCCGCGCCGTAGTACAGGGCACGCTGACCGAAGGTGCCATCGGCTACCGCCACTTTGAGGTGGTGAA
AGGCAGCAAGCTGCTGGCCACCATCAAACTGGCCGACGGCAGTGAACCGCCGTTTGGTGCCACGGTGCTGAGCGAAAAAG
GCCGCGAAGTGGCCGTAGTGAACGACGGTGGCTCGGTCTACCTGACCGGCGTACAGCCGCAAGAGCAACTCGACGTCGCC
TGGGAAGGCCAGCGTCAGTGCCGCATTGTCATACCGGGCGCCGCCAAGCCGCTGGATCAGCTCTTGCTGCCGTGCGCCAA
ACTGTAA

Upstream 100 bases:

>100_bases
GGGTGCCTTCACAGGGCACTGAATGACATCACGTATTACGTATTCAGGTCGTACAGGATGACCTGCTATTGGGCGCGGAT
TTGCCATGAGTGATTATTCT

Downstream 100 bases:

>100_bases
TCCGTAACGCAGAGAATTGAAGATGATGAACCACTTTCCGTTAGCAAAAATGGCCTCGCTGGGCCTGGCATTGGCCGCCG
CAGCCCCCGTCGCCAACGCG

Product: fimbrial biogenesis outer membrane usher protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 828; Mature: 827

Protein sequence:

>828_residues
MTSLLTRKKIPLTVILSFLWVHSAFSATEFNTDVLDIGDRSKVDLSRFSDADYVMPGAYLLDIKINQKTLPQRSIQYYPS
PDQKDRSRVCLPPDLIEKMALKEEVVKKITLWHDNSCADISGIKGATISDRIGGGVLAITIPQAWMKYSDPDWTPPEQWD
DGIPGLLLDYSISGQVGKQSHNNNTAENLSSYGTVGANLGAWRLRADYQATYNQQAGQRDSNFDWNQIYAYRALPMQAAK
LTLGEIFLDSGVFDSYRFTGLNLASDERMLPPNLQGYAPEVRGIAKSNAKITVSQEGRTLYETTVPAGPFAIQDLNSSVR
GRLDVKVEEQDGSVSTFQVDTATIPYLTRPGYVRYNVAVGKPSAYDHRTQGPLFSASDFSWGLTSAWSLYGGALLGGDYN
AWALGLGRDLNVFGAMSVDVTQSIARLPNEPTASGLSFKVNYAKRFDEMNSQITFAGYRFSQRKFMNMSQYLQERYNDYD
ERYDGRQKELYTITASKTFMAEDSAKAITAYLTYSHQTYWDARAQDRYGLSASKLFNVGNVSNITASLSAYRTTYHGRTD
DSVMVNFSVPIGDRRRVGYSLQTSNSDVTQMASYNDYTDPNNTWQVSGGFNQSGKSLARGYYSHNASFGSLNASASYQQD
SYSSIGGTFRSGITATRHGIAAHQNSSNGGSRMMLDTDGIAGVPINNGRAYSNRFGLAVISDITSYYNTDTRIDVNTLAD
DVEATRAVVQGTLTEGAIGYRHFEVVKGSKLLATIKLADGSEPPFGATVLSEKGREVAVVNDGGSVYLTGVQPQEQLDVA
WEGQRQCRIVIPGAAKPLDQLLLPCAKL

Sequences:

>Translated_828_residues
MTSLLTRKKIPLTVILSFLWVHSAFSATEFNTDVLDIGDRSKVDLSRFSDADYVMPGAYLLDIKINQKTLPQRSIQYYPS
PDQKDRSRVCLPPDLIEKMALKEEVVKKITLWHDNSCADISGIKGATISDRIGGGVLAITIPQAWMKYSDPDWTPPEQWD
DGIPGLLLDYSISGQVGKQSHNNNTAENLSSYGTVGANLGAWRLRADYQATYNQQAGQRDSNFDWNQIYAYRALPMQAAK
LTLGEIFLDSGVFDSYRFTGLNLASDERMLPPNLQGYAPEVRGIAKSNAKITVSQEGRTLYETTVPAGPFAIQDLNSSVR
GRLDVKVEEQDGSVSTFQVDTATIPYLTRPGYVRYNVAVGKPSAYDHRTQGPLFSASDFSWGLTSAWSLYGGALLGGDYN
AWALGLGRDLNVFGAMSVDVTQSIARLPNEPTASGLSFKVNYAKRFDEMNSQITFAGYRFSQRKFMNMSQYLQERYNDYD
ERYDGRQKELYTITASKTFMAEDSAKAITAYLTYSHQTYWDARAQDRYGLSASKLFNVGNVSNITASLSAYRTTYHGRTD
DSVMVNFSVPIGDRRRVGYSLQTSNSDVTQMASYNDYTDPNNTWQVSGGFNQSGKSLARGYYSHNASFGSLNASASYQQD
SYSSIGGTFRSGITATRHGIAAHQNSSNGGSRMMLDTDGIAGVPINNGRAYSNRFGLAVISDITSYYNTDTRIDVNTLAD
DVEATRAVVQGTLTEGAIGYRHFEVVKGSKLLATIKLADGSEPPFGATVLSEKGREVAVVNDGGSVYLTGVQPQEQLDVA
WEGQRQCRIVIPGAAKPLDQLLLPCAKL
>Mature_827_residues
TSLLTRKKIPLTVILSFLWVHSAFSATEFNTDVLDIGDRSKVDLSRFSDADYVMPGAYLLDIKINQKTLPQRSIQYYPSP
DQKDRSRVCLPPDLIEKMALKEEVVKKITLWHDNSCADISGIKGATISDRIGGGVLAITIPQAWMKYSDPDWTPPEQWDD
GIPGLLLDYSISGQVGKQSHNNNTAENLSSYGTVGANLGAWRLRADYQATYNQQAGQRDSNFDWNQIYAYRALPMQAAKL
TLGEIFLDSGVFDSYRFTGLNLASDERMLPPNLQGYAPEVRGIAKSNAKITVSQEGRTLYETTVPAGPFAIQDLNSSVRG
RLDVKVEEQDGSVSTFQVDTATIPYLTRPGYVRYNVAVGKPSAYDHRTQGPLFSASDFSWGLTSAWSLYGGALLGGDYNA
WALGLGRDLNVFGAMSVDVTQSIARLPNEPTASGLSFKVNYAKRFDEMNSQITFAGYRFSQRKFMNMSQYLQERYNDYDE
RYDGRQKELYTITASKTFMAEDSAKAITAYLTYSHQTYWDARAQDRYGLSASKLFNVGNVSNITASLSAYRTTYHGRTDD
SVMVNFSVPIGDRRRVGYSLQTSNSDVTQMASYNDYTDPNNTWQVSGGFNQSGKSLARGYYSHNASFGSLNASASYQQDS
YSSIGGTFRSGITATRHGIAAHQNSSNGGSRMMLDTDGIAGVPINNGRAYSNRFGLAVISDITSYYNTDTRIDVNTLADD
VEATRAVVQGTLTEGAIGYRHFEVVKGSKLLATIKLADGSEPPFGATVLSEKGREVAVVNDGGSVYLTGVQPQEQLDVAW
EGQRQCRIVIPGAAKPLDQLLLPCAKL

Specific function: Involved in the export and assembly of PMF fimbrial subunits across the outer membrane [H]

COG id: COG3188

COG function: function code NU; P pilus assembly protein, porin PapC

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fimbrial export usher family [H]

Homologues:

Organism=Escherichia coli, GI87081778, Length=809, Percent_Identity=35.3522867737948, Blast_Score=502, Evalue=1e-143,
Organism=Escherichia coli, GI1790772, Length=863, Percent_Identity=29.6639629200463, Blast_Score=316, Evalue=3e-87,
Organism=Escherichia coli, GI1786332, Length=852, Percent_Identity=29.1079812206573, Blast_Score=310, Evalue=3e-85,
Organism=Escherichia coli, GI1787172, Length=856, Percent_Identity=28.5046728971963, Blast_Score=285, Evalue=7e-78,
Organism=Escherichia coli, GI1786744, Length=841, Percent_Identity=27.3483947681332, Blast_Score=280, Evalue=3e-76,
Organism=Escherichia coli, GI1789533, Length=834, Percent_Identity=27.5779376498801, Blast_Score=274, Evalue=2e-74,
Organism=Escherichia coli, GI1788427, Length=850, Percent_Identity=25.5294117647059, Blast_Score=226, Evalue=5e-60,
Organism=Escherichia coli, GI1789610, Length=801, Percent_Identity=22.8464419475655, Blast_Score=99, Evalue=1e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000015
- InterPro:   IPR018030 [H]

Pfam domain/function: PF00577 Usher [H]

EC number: NA

Molecular weight: Translated: 91148; Mature: 91017

Theoretical pI: Translated: 6.38; Mature: 6.38

Prosite motif: PS01151 FIMBRIAL_USHER

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSLLTRKKIPLTVILSFLWVHSAFSATEFNTDVLDIGDRSKVDLSRFSDADYVMPGAYL
CCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCHHHCCCCCEECCCEEE
LDIKINQKTLPQRSIQYYPSPDQKDRSRVCLPPDLIEKMALKEEVVKKITLWHDNSCADI
EEEEECCCCCCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHEEEEECCCCCCC
SGIKGATISDRIGGGVLAITIPQAWMKYSDPDWTPPEQWDDGIPGLLLDYSISGQVGKQS
CCCCCCEECCCCCCCEEEEEECHHHHCCCCCCCCCCHHHCCCCCCEEEEEECCCCCCCCC
HNNNTAENLSSYGTVGANLGAWRLRADYQATYNQQAGQRDSNFDWNQIYAYRALPMQAAK
CCCCCHHHHHHCCCCCCCCCEEEEEECHHHHHCCCCCCCCCCCCHHHEEEEECCCHHHHH
LTLGEIFLDSGVFDSYRFTGLNLASDERMLPPNLQGYAPEVRGIAKSNAKITVSQEGRTL
HHHHHHHCCCCCCCCEEEECCEECCCCCCCCCCCCCCCCHHHHHCCCCCEEEEECCCCEE
YETTVPAGPFAIQDLNSSVRGRLDVKVEEQDGSVSTFQVDTATIPYLTRPGYVRYNVAVG
EEECCCCCCEEHHHCCCCCCCEEEEEEECCCCCEEEEEEECEECCEEECCCEEEEEEEEC
KPSAYDHRTQGPLFSASDFSWGLTSAWSLYGGALLGGDYNAWALGLGRDLNVFGAMSVDV
CCCCCCCCCCCCEEECCCCCCCHHHHHHHHCCEEECCCCCEEEEECCCCCCEEEEEEHHH
TQSIARLPNEPTASGLSFKVNYAKRFDEMNSQITFAGYRFSQRKFMNMSQYLQERYNDYD
HHHHHHCCCCCCCCCEEEEEHHHHHHHHCCCEEEEEEEEECHHHHHHHHHHHHHHHCCHH
ERYDGRQKELYTITASKTFMAEDSAKAITAYLTYSHQTYWDARAQDRYGLSASKLFNVGN
HHCCCCCCEEEEEEECCEEEECCCCCEEEEEEEECCCEEECCCCCCCCCCCHHHEECCCC
VSNITASLSAYRTTYHGRTDDSVMVNFSVPIGDRRRVGYSLQTSNSDVTQMASYNDYTDP
CCHHHHHHHHHEEEECCCCCCCEEEEEECCCCCCCCCCEEEECCCCCHHHHHCCCCCCCC
NNTWQVSGGFNQSGKSLARGYYSHNASFGSLNASASYQQDSYSSIGGTFRSGITATRHGI
CCEEEEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHCCHHHCCCHHHHCCE
AAHQNSSNGGSRMMLDTDGIAGVPINNGRAYSNRFGLAVISDITSYYNTDTRIDVNTLAD
EECCCCCCCCCEEEEECCCEEEEECCCCCEECCCCCHHHHHHHHHHCCCCCEEEHHHHHH
DVEATRAVVQGTLTEGAIGYRHFEVVKGSKLLATIKLADGSEPPFGATVLSEKGREVAVV
HHHHHHHHHHHCCCCCCCCEEEEEEECCCEEEEEEEECCCCCCCCCCHHHHCCCCEEEEE
NDGGSVYLTGVQPQEQLDVAWEGQRQCRIVIPGAAKPLDQLLLPCAKL
ECCCEEEEECCCCHHHCCEEECCCCEEEEEECCCCCCHHHHHHHHHCC
>Mature Secondary Structure 
TSLLTRKKIPLTVILSFLWVHSAFSATEFNTDVLDIGDRSKVDLSRFSDADYVMPGAYL
CCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCHHHCCCCCEECCCEEE
LDIKINQKTLPQRSIQYYPSPDQKDRSRVCLPPDLIEKMALKEEVVKKITLWHDNSCADI
EEEEECCCCCCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHEEEEECCCCCCC
SGIKGATISDRIGGGVLAITIPQAWMKYSDPDWTPPEQWDDGIPGLLLDYSISGQVGKQS
CCCCCCEECCCCCCCEEEEEECHHHHCCCCCCCCCCHHHCCCCCCEEEEEECCCCCCCCC
HNNNTAENLSSYGTVGANLGAWRLRADYQATYNQQAGQRDSNFDWNQIYAYRALPMQAAK
CCCCCHHHHHHCCCCCCCCCEEEEEECHHHHHCCCCCCCCCCCCHHHEEEEECCCHHHHH
LTLGEIFLDSGVFDSYRFTGLNLASDERMLPPNLQGYAPEVRGIAKSNAKITVSQEGRTL
HHHHHHHCCCCCCCCEEEECCEECCCCCCCCCCCCCCCCHHHHHCCCCCEEEEECCCCEE
YETTVPAGPFAIQDLNSSVRGRLDVKVEEQDGSVSTFQVDTATIPYLTRPGYVRYNVAVG
EEECCCCCCEEHHHCCCCCCCEEEEEEECCCCCEEEEEEECEECCEEECCCEEEEEEEEC
KPSAYDHRTQGPLFSASDFSWGLTSAWSLYGGALLGGDYNAWALGLGRDLNVFGAMSVDV
CCCCCCCCCCCCEEECCCCCCCHHHHHHHHCCEEECCCCCEEEEECCCCCCEEEEEEHHH
TQSIARLPNEPTASGLSFKVNYAKRFDEMNSQITFAGYRFSQRKFMNMSQYLQERYNDYD
HHHHHHCCCCCCCCCEEEEEHHHHHHHHCCCEEEEEEEEECHHHHHHHHHHHHHHHCCHH
ERYDGRQKELYTITASKTFMAEDSAKAITAYLTYSHQTYWDARAQDRYGLSASKLFNVGN
HHCCCCCCEEEEEEECCEEEECCCCCEEEEEEEECCCEEECCCCCCCCCCCHHHEECCCC
VSNITASLSAYRTTYHGRTDDSVMVNFSVPIGDRRRVGYSLQTSNSDVTQMASYNDYTDP
CCHHHHHHHHHEEEECCCCCCCEEEEEECCCCCCCCCCEEEECCCCCHHHHHCCCCCCCC
NNTWQVSGGFNQSGKSLARGYYSHNASFGSLNASASYQQDSYSSIGGTFRSGITATRHGI
CCEEEEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHCCHHHCCCHHHHCCE
AAHQNSSNGGSRMMLDTDGIAGVPINNGRAYSNRFGLAVISDITSYYNTDTRIDVNTLAD
EECCCCCCCCCEEEEECCCEEEEECCCCCEECCCCCHHHHHHHHHHCCCCCEEEHHHHHH
DVEATRAVVQGTLTEGAIGYRHFEVVKGSKLLATIKLADGSEPPFGATVLSEKGREVAVV
HHHHHHHHHHHCCCCCCCCEEEEEEECCCEEEEEEEECCCCCCCCCCHHHHCCCCEEEEE
NDGGSVYLTGVQPQEQLDVAWEGQRQCRIVIPGAAKPLDQLLLPCAKL
ECCCEEEEECCCCHHHCCEEECCCCEEEEEECCCCCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7959033 [H]