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The map label for this gene is phnR [H]

Identifier: 157372722

GI number: 157372722

Start: 4971982

End: 4972692

Strand: Direct

Name: phnR [H]

Synonym: Spro_4489

Alternate gene names: 157372722

Gene position: 4971982-4972692 (Clockwise)

Preceding gene: 157372715

Following gene: 157372724

Centisome position: 91.25

GC content: 59.07

Gene sequence:

>711_bases
ATGAGTGAAGGAACAACAACCGTGGCGACTATTTGCCAGATTCTGGCCAGCCGTATCGCCGACGGGGAGTTCAACGCCGA
CGGCAAACTGCCTTCCGAGCGAGCCCTGAGCGAACAGTTTTCCACCACCCGCATTACGCTGCAGGAAGCACTCGGCCAGT
TGGAGGCGCAGGGTGTGATTTACCGTCAGGTCAGGCGTGGCTGGTTTATTTCGCCGCCCCGGCTGGTGTACAACCCGTTG
CAGCGCAGCCATTTCCACGCCATGGCGCAGCAGCAGGGACGCGATGCCCATACCGAAGTGATCGACGCCGCCACTCTGCC
GCTGTACGGCAGCCTGTGCCAACGCTTGGATCTGCCCCCCGGTAGCGAGATCTACCGCATTCGTCGGCTGCGCTATATCG
ACGGTCGTGCAGTGTTGTACTGCGAGCACTACCTCAATCCCGCCTATTTTGCCGGTATCCTGGAAGAAGATTTAACCCAG
TCGCTGACCGGGCTGTACGCCGAACGCTACGGCATTCGTTATGGCCGGGTGCGTTTCGATATGCTGCCCACCCTGCTGCC
ACAGGAAGCGGCCACCATGCTGAAAGTGACCTACGGCAGCCCGGCGCTGTTTATTACCCGGGTTAACCGCGATCAGCACG
ATCGGGTGATTGATTGTGATTTGGAATATTGGCGTTACGACGCGCTGCACATTGACGTGGAGGCACAATGA

Upstream 100 bases:

>100_bases
AGTCTAAAAAAGCAGCATTTTTATCGCATTCGGGCGTCACCGAAGCTGGCGTTGGTCTACCTTTAGCGGGGCAAAGCGCA
CTCAATTGGGGCAACTGTGC

Downstream 100 bases:

>100_bases
CAGGAGCGCGGCAAGCCGCGCCCCTAAAGAAGGATAATCAGTCGGCGTCGTAGCCGAGGTTGGGTGCCAGCCAGCGTTCA
ACCTCGCTGACGCTCATGCC

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 236; Mature: 235

Protein sequence:

>236_residues
MSEGTTTVATICQILASRIADGEFNADGKLPSERALSEQFSTTRITLQEALGQLEAQGVIYRQVRRGWFISPPRLVYNPL
QRSHFHAMAQQQGRDAHTEVIDAATLPLYGSLCQRLDLPPGSEIYRIRRLRYIDGRAVLYCEHYLNPAYFAGILEEDLTQ
SLTGLYAERYGIRYGRVRFDMLPTLLPQEAATMLKVTYGSPALFITRVNRDQHDRVIDCDLEYWRYDALHIDVEAQ

Sequences:

>Translated_236_residues
MSEGTTTVATICQILASRIADGEFNADGKLPSERALSEQFSTTRITLQEALGQLEAQGVIYRQVRRGWFISPPRLVYNPL
QRSHFHAMAQQQGRDAHTEVIDAATLPLYGSLCQRLDLPPGSEIYRIRRLRYIDGRAVLYCEHYLNPAYFAGILEEDLTQ
SLTGLYAERYGIRYGRVRFDMLPTLLPQEAATMLKVTYGSPALFITRVNRDQHDRVIDCDLEYWRYDALHIDVEAQ
>Mature_235_residues
SEGTTTVATICQILASRIADGEFNADGKLPSERALSEQFSTTRITLQEALGQLEAQGVIYRQVRRGWFISPPRLVYNPLQ
RSHFHAMAQQQGRDAHTEVIDAATLPLYGSLCQRLDLPPGSEIYRIRRLRYIDGRAVLYCEHYLNPAYFAGILEEDLTQS
LTGLYAERYGIRYGRVRFDMLPTLLPQEAATMLKVTYGSPALFITRVNRDQHDRVIDCDLEYWRYDALHIDVEAQ

Specific function: Unknown

COG id: COG2188

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790304, Length=234, Percent_Identity=31.6239316239316, Blast_Score=133, Evalue=9e-33,
Organism=Escherichia coli, GI87082252, Length=231, Percent_Identity=25.1082251082251, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1786950, Length=193, Percent_Identity=23.8341968911917, Blast_Score=74, Evalue=6e-15,
Organism=Escherichia coli, GI1790118, Length=214, Percent_Identity=21.0280373831776, Blast_Score=70, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000524
- InterPro:   IPR017722
- InterPro:   IPR011663
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR; PF07702 UTRA [H]

EC number: NA

Molecular weight: Translated: 26975; Mature: 26844

Theoretical pI: Translated: 6.25; Mature: 6.25

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEGTTTVATICQILASRIADGEFNADGKLPSERALSEQFSTTRITLQEALGQLEAQGVI
CCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHEEHHHHHHHHHHHHHH
YRQVRRGWFISPPRLVYNPLQRSHFHAMAQQQGRDAHTEVIDAATLPLYGSLCQRLDLPP
HHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCC
GSEIYRIRRLRYIDGRAVLYCEHYLNPAYFAGILEEDLTQSLTGLYAERYGIRYGRVRFD
CHHHHHHHHHEEECCCEEEEEHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCEECEEEHH
MLPTLLPQEAATMLKVTYGSPALFITRVNRDQHDRVIDCDLEYWRYDALHIDVEAQ
HHHHHCCHHHHHEEEEECCCCEEEEEECCCCCCCCEEECCHHHEEEEEEEEEEECC
>Mature Secondary Structure 
SEGTTTVATICQILASRIADGEFNADGKLPSERALSEQFSTTRITLQEALGQLEAQGVI
CCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHEEHHHHHHHHHHHHHH
YRQVRRGWFISPPRLVYNPLQRSHFHAMAQQQGRDAHTEVIDAATLPLYGSLCQRLDLPP
HHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCC
GSEIYRIRRLRYIDGRAVLYCEHYLNPAYFAGILEEDLTQSLTGLYAERYGIRYGRVRFD
CHHHHHHHHHEEECCCEEEEEHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCEECEEEHH
MLPTLLPQEAATMLKVTYGSPALFITRVNRDQHDRVIDCDLEYWRYDALHIDVEAQ
HHHHHCCHHHHHEEEEECCCCEEEEEECCCCCCCCEEECCHHHEEEEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA