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The map label for this gene is kdsD [H]

Identifier: 157372595

GI number: 157372595

Start: 4832618

End: 4833604

Strand: Direct

Name: kdsD [H]

Synonym: Spro_4362

Alternate gene names: 157372595

Gene position: 4832618-4833604 (Clockwise)

Preceding gene: 157372594

Following gene: 157372596

Centisome position: 88.69

GC content: 58.36

Gene sequence:

>987_bases
ATGTCGAACATTCAGTTGCAACCAGGCTTTGATTTTCAGCAGGCAGGCAAAGAAGTGCTGCAGATTGAGCGTGACGGGCT
GGCTCAGCTCGATCAATACATCAATGCAGACTTTACCCGCGCCTGCGAGTTGATCGCCGAATGCACGGGTAAAGTGGTGG
TGATGGGCATGGGCAAATCCGGCCATATCGGCTGCAAGATTGCCGCCACCTTCGCCAGCACCGGCACGCCTTCGTTCTTT
GTTCACCCTGCGGAAGCCAGCCACGGTGATCTCGGCATGGTGTCTGCGCAGGATATTGTGCTCGCCATCTCCAACTCCGG
CGAGTCCAACGAAATCCAGGCGCTGATCCCGGTATTGAAGCGCCAGCAAATCCCGTTAATCTGCATGACCAACAACCCGG
AAAGCTCGATGGGCAAAGCGGCGGATATTCACCTGTGCATCAAGGTGCCACAGGAAGCCTGCCCGCTCGGCCTGGCACCG
ACCACCAGCACCACCGCCACCCTGGTGATGGGCGATGCGCTAGCCGTCGCCCTGCTGAAAGCCCGCGGTTTCACCCCGGA
AGATTTTGCGTTGTCACACCCTGGTGGCGCTCTGGGCCGCCGACTGCTGCTGCGCGTGAGTGATATCATGCACAGCGGCG
ATGAAATTCCCCACGTCAGCGCCGATGCATCGCTGCGCGACGCGCTGCTGGAAATCACCCGCAAAAATCTGGGTATGACG
GTCATCTGTGACGATCTGATGAAGATCGCCGGTATCTTTACCGATGGTGACCTGCGCCGGATTTTTGATATGGGTATCAA
TCTCAACGAGGCCAGGATCGTCGATGTCATGACGCTCGGTGGCGTGCGAGTGCGTCCGAACCTGCTGGCGGTCGACGCGC
TGAACCTGATGCAGCAACGTCATATCACCTCAGTGCTGGTTGCCGATGGCGACCAGTTGCTGGGTGTGGTACATATGCAT
GACATGCTGCGCGCCGGCGTCGTTTAA

Upstream 100 bases:

>100_bases
TGGCAGGGGCTCTGTTATTATGTGGCTTTATTGCGTATCTTGCGGTGCTGTTTTTTAACCCTTTCAGTACTTTCGGCTAA
ACCGACGAGCGGGAATGAGT

Downstream 100 bases:

>100_bases
TTATGGAAGAGAACTCAATGAGTCTGGTTGAAACCTGCTACGGGCCTGTAGAACAAGACGTCATGGCGCGCGCCGGTAAA
ATCCGCCTGCTGATTTGTGA

Product: D-arabinose 5-phosphate isomerase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 328; Mature: 327

Protein sequence:

>328_residues
MSNIQLQPGFDFQQAGKEVLQIERDGLAQLDQYINADFTRACELIAECTGKVVVMGMGKSGHIGCKIAATFASTGTPSFF
VHPAEASHGDLGMVSAQDIVLAISNSGESNEIQALIPVLKRQQIPLICMTNNPESSMGKAADIHLCIKVPQEACPLGLAP
TTSTTATLVMGDALAVALLKARGFTPEDFALSHPGGALGRRLLLRVSDIMHSGDEIPHVSADASLRDALLEITRKNLGMT
VICDDLMKIAGIFTDGDLRRIFDMGINLNEARIVDVMTLGGVRVRPNLLAVDALNLMQQRHITSVLVADGDQLLGVVHMH
DMLRAGVV

Sequences:

>Translated_328_residues
MSNIQLQPGFDFQQAGKEVLQIERDGLAQLDQYINADFTRACELIAECTGKVVVMGMGKSGHIGCKIAATFASTGTPSFF
VHPAEASHGDLGMVSAQDIVLAISNSGESNEIQALIPVLKRQQIPLICMTNNPESSMGKAADIHLCIKVPQEACPLGLAP
TTSTTATLVMGDALAVALLKARGFTPEDFALSHPGGALGRRLLLRVSDIMHSGDEIPHVSADASLRDALLEITRKNLGMT
VICDDLMKIAGIFTDGDLRRIFDMGINLNEARIVDVMTLGGVRVRPNLLAVDALNLMQQRHITSVLVADGDQLLGVVHMH
DMLRAGVV
>Mature_327_residues
SNIQLQPGFDFQQAGKEVLQIERDGLAQLDQYINADFTRACELIAECTGKVVVMGMGKSGHIGCKIAATFASTGTPSFFV
HPAEASHGDLGMVSAQDIVLAISNSGESNEIQALIPVLKRQQIPLICMTNNPESSMGKAADIHLCIKVPQEACPLGLAPT
TSTTATLVMGDALAVALLKARGFTPEDFALSHPGGALGRRLLLRVSDIMHSGDEIPHVSADASLRDALLEITRKNLGMTV
ICDDLMKIAGIFTDGDLRRIFDMGINLNEARIVDVMTLGGVRVRPNLLAVDALNLMQQRHITSVLVADGDQLLGVVHMHD
MLRAGVV

Specific function: Catalyzes the interconversion of D-arabinose 5-phosphate and D-ribulose 5-phosphate [H]

COG id: COG0794

COG function: function code M; Predicted sugar phosphate isomerase involved in capsule formation

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 SIS domain [H]

Homologues:

Organism=Escherichia coli, GI1789588, Length=328, Percent_Identity=79.2682926829268, Blast_Score=543, Evalue=1e-156,
Organism=Escherichia coli, GI87082151, Length=316, Percent_Identity=48.4177215189873, Blast_Score=296, Evalue=1e-81,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR000644
- InterPro:   IPR004800
- InterPro:   IPR001347 [H]

Pfam domain/function: PF00571 CBS; PF01380 SIS [H]

EC number: =5.3.1.13 [H]

Molecular weight: Translated: 35041; Mature: 34910

Theoretical pI: Translated: 5.54; Mature: 5.54

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
4.6 %Met     (Translated Protein)
6.7 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
6.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNIQLQPGFDFQQAGKEVLQIERDGLAQLDQYINADFTRACELIAECTGKVVVMGMGKS
CCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHCCCCEEEEECCCC
GHIGCKIAATFASTGTPSFFVHPAEASHGDLGMVSAQDIVLAISNSGESNEIQALIPVLK
CCEEEEEEEEEECCCCCCEEEECCCCCCCCEEEEECCEEEEEEECCCCCCHHHHHHHHHH
RQQIPLICMTNNPESSMGKAADIHLCIKVPQEACPLGLAPTTSTTATLVMGDALAVALLK
CCCCCEEEEECCCCHHCCCCCEEEEEEECCHHHCCCCCCCCCCCCEEEEEHHHHHHHHHH
ARGFTPEDFALSHPGGALGRRLLLRVSDIMHSGDEIPHVSADASLRDALLEITRKNLGMT
HCCCCCCCCEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCEE
VICDDLMKIAGIFTDGDLRRIFDMGINLNEARIVDVMTLGGVRVRPNLLAVDALNLMQQR
EEHHHHHHHHHCCCCCHHHHHHHCCCCCCCCEEEEEEEECCEEECCCEEEHHHHHHHHHH
HITSVLVADGDQLLGVVHMHDMLRAGVV
HHHEEEEECCHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SNIQLQPGFDFQQAGKEVLQIERDGLAQLDQYINADFTRACELIAECTGKVVVMGMGKS
CCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHCCCCEEEEECCCC
GHIGCKIAATFASTGTPSFFVHPAEASHGDLGMVSAQDIVLAISNSGESNEIQALIPVLK
CCEEEEEEEEEECCCCCCEEEECCCCCCCCEEEEECCEEEEEEECCCCCCHHHHHHHHHH
RQQIPLICMTNNPESSMGKAADIHLCIKVPQEACPLGLAPTTSTTATLVMGDALAVALLK
CCCCCEEEEECCCCHHCCCCCEEEEEEECCHHHCCCCCCCCCCCCEEEEEHHHHHHHHHH
ARGFTPEDFALSHPGGALGRRLLLRVSDIMHSGDEIPHVSADASLRDALLEITRKNLGMT
HCCCCCCCCEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCEE
VICDDLMKIAGIFTDGDLRRIFDMGINLNEARIVDVMTLGGVRVRPNLLAVDALNLMQQR
EEHHHHHHHHHCCCCCHHHHHHHCCCCCCCCEEEEEEEECCEEECCCEEEHHHHHHHHHH
HITSVLVADGDQLLGVVHMHDMLRAGVV
HHHEEEEECCHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11586360; 12142430 [H]