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The map label for this gene is yphD [H]

Identifier: 157372460

GI number: 157372460

Start: 4686037

End: 4687017

Strand: Reverse

Name: yphD [H]

Synonym: Spro_4227

Alternate gene names: 157372460

Gene position: 4687017-4686037 (Counterclockwise)

Preceding gene: 157372461

Following gene: 157372459

Centisome position: 86.02

GC content: 56.57

Gene sequence:

>981_bases
ATGTCCACCTTGGTACCGGATGTAAAAATAGCAAAAGCCCGTAAATTATCGAAGCACGCTAATGAACTTGGCCTGTTGGC
AATTATTATCGTGCTGTACCTGGTGTTTTCCATTTACGCCACCGGGTTTATTTCTCTGAATAACCAAATGAATATTTTAC
GCGACGCCGCCACTATCGGTATTGCCGCCTGGGCAATGACGCTGATTATTATTTCCGGCGAAATCGACGTCAGCGTCGGC
CCGATGGTGGCGTTTATTTCGGTGATCCTGGCTTATTTAATGCAATACCAAATCCCGCTGGCGTTCGCGCTGATACTGGC
TCTGTGTCTGGGGGCGGCGTTGGGCTCGGTCGCCGGAGCGCTGCGCGGTTGGTTTAACGTGCCGAGCTTTGTCGCCACGC
TGGGGCTTTGGAGCGCCTTGCGCGGCATGGGGCTGTTTATGACCAACGCCTTGCCGGTACCGATTGACGAAAACACGGTG
CTGGACTGGCTGGGCGGGCAGGTGTTGGGCCTGCCGGTTTCGGCGGTGATTATGCTGATCCTGTTTGTGGTCTTTCAGTT
TATCAGCAAGAAAACTGCCTTTGGTCGCTCGGTGTATGCCATTGGCGGCAACGCCGGTGCCGCCCAGCTGTGCGGCATTA
ACGTCAAACGCATTCGCGTGCTGCTATTTACCCTGGCCGGCTTGCTGGCCGCCGTCACCGGTATTCTGCTGGCGGCGCGT
CTTGGCTCCGGCAATGCCGGGGCGGCCAGCGGCCTGGAGTTTGACGTGATTGCCGCCGTGGTGGTGGGCGGTACCGCCTT
GTCTGGCGGACGCGGTTCGATGCTCGGCACCCTGCTCGGCGTGCTGGTGATCACCCTGATTGGCAACGGCCTGGTCTTGC
TGGGGATTAACTCCTTTTTCCAACAGGTGGTCAGAGGGGTGATTATCGTACTGGCGGTGCTGGCCAATATTATCGTGATG
CAAAAGAACTCTAAGCAATAG

Upstream 100 bases:

>100_bases
GAAGGAGTTTATCTCGCCCGTGGATGTTGAACAGCTGATGTCCGAAGTGCTGATGATCCAATAATTCTGCCCGCATGTGA
AGGCATCGGAGGTAATGACA

Downstream 100 bases:

>100_bases
CCTCACATGCCACACAAATAACTGATTAAAGCTGGAGGGAAAATAGTATGGGGAAAATGTTGGCGGCTTATTTACCCGGA
AACGCCACGGCAGAACTGCG

Product: monosaccharide-transporting ATPase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 326; Mature: 325

Protein sequence:

>326_residues
MSTLVPDVKIAKARKLSKHANELGLLAIIIVLYLVFSIYATGFISLNNQMNILRDAATIGIAAWAMTLIIISGEIDVSVG
PMVAFISVILAYLMQYQIPLAFALILALCLGAALGSVAGALRGWFNVPSFVATLGLWSALRGMGLFMTNALPVPIDENTV
LDWLGGQVLGLPVSAVIMLILFVVFQFISKKTAFGRSVYAIGGNAGAAQLCGINVKRIRVLLFTLAGLLAAVTGILLAAR
LGSGNAGAASGLEFDVIAAVVVGGTALSGGRGSMLGTLLGVLVITLIGNGLVLLGINSFFQQVVRGVIIVLAVLANIIVM
QKNSKQ

Sequences:

>Translated_326_residues
MSTLVPDVKIAKARKLSKHANELGLLAIIIVLYLVFSIYATGFISLNNQMNILRDAATIGIAAWAMTLIIISGEIDVSVG
PMVAFISVILAYLMQYQIPLAFALILALCLGAALGSVAGALRGWFNVPSFVATLGLWSALRGMGLFMTNALPVPIDENTV
LDWLGGQVLGLPVSAVIMLILFVVFQFISKKTAFGRSVYAIGGNAGAAQLCGINVKRIRVLLFTLAGLLAAVTGILLAAR
LGSGNAGAASGLEFDVIAAVVVGGTALSGGRGSMLGTLLGVLVITLIGNGLVLLGINSFFQQVVRGVIIVLAVLANIIVM
QKNSKQ
>Mature_325_residues
STLVPDVKIAKARKLSKHANELGLLAIIIVLYLVFSIYATGFISLNNQMNILRDAATIGIAAWAMTLIIISGEIDVSVGP
MVAFISVILAYLMQYQIPLAFALILALCLGAALGSVAGALRGWFNVPSFVATLGLWSALRGMGLFMTNALPVPIDENTVL
DWLGGQVLGLPVSAVIMLILFVVFQFISKKTAFGRSVYAIGGNAGAAQLCGINVKRIRVLLFTLAGLLAAVTGILLAARL
GSGNAGAASGLEFDVIAAVVVGGTALSGGRGSMLGTLLGVLVITLIGNGLVLLGINSFFQQVVRGVIIVLAVLANIIVMQ
KNSKQ

Specific function: Probably part of the binding-protein-dependent transport system yphDEF. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1788896, Length=310, Percent_Identity=81.6129032258064, Blast_Score=486, Evalue=1e-139,
Organism=Escherichia coli, GI1790191, Length=302, Percent_Identity=40.3973509933775, Blast_Score=182, Evalue=3e-47,
Organism=Escherichia coli, GI87082395, Length=296, Percent_Identity=36.1486486486487, Blast_Score=133, Evalue=1e-32,
Organism=Escherichia coli, GI145693152, Length=294, Percent_Identity=30.6122448979592, Blast_Score=124, Evalue=6e-30,
Organism=Escherichia coli, GI1790524, Length=291, Percent_Identity=32.3024054982818, Blast_Score=122, Evalue=3e-29,
Organism=Escherichia coli, GI1789992, Length=137, Percent_Identity=41.6058394160584, Blast_Score=120, Evalue=1e-28,
Organism=Escherichia coli, GI1787794, Length=318, Percent_Identity=28.9308176100629, Blast_Score=103, Evalue=2e-23,
Organism=Escherichia coli, GI1787793, Length=253, Percent_Identity=35.1778656126482, Blast_Score=99, Evalue=3e-22,
Organism=Escherichia coli, GI145693214, Length=257, Percent_Identity=35.0194552529183, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI1788471, Length=264, Percent_Identity=30.6818181818182, Blast_Score=80, Evalue=1e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 33892; Mature: 33761

Theoretical pI: Translated: 10.41; Mature: 10.41

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTLVPDVKIAKARKLSKHANELGLLAIIIVLYLVFSIYATGFISLNNQMNILRDAATIG
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCHHHHHHHHHHH
IAAWAMTLIIISGEIDVSVGPMVAFISVILAYLMQYQIPLAFALILALCLGAALGSVAGA
HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LRGWFNVPSFVATLGLWSALRGMGLFMTNALPVPIDENTVLDWLGGQVLGLPVSAVIMLI
HHHHCCHHHHHHHHHHHHHHHHCHHHHHCCCCCCCCCCCHHHHHCCCEECCCHHHHHHHH
LFVVFQFISKKTAFGRSVYAIGGNAGAAQLCGINVKRIRVLLFTLAGLLAAVTGILLAAR
HHHHHHHHHHHHHCCCEEEEECCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
LGSGNAGAASGLEFDVIAAVVVGGTALSGGRGSMLGTLLGVLVITLIGNGLVLLGINSFF
CCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEHHHHH
QQVVRGVIIVLAVLANIIVMQKNSKQ
HHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
STLVPDVKIAKARKLSKHANELGLLAIIIVLYLVFSIYATGFISLNNQMNILRDAATIG
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCHHHHHHHHHHH
IAAWAMTLIIISGEIDVSVGPMVAFISVILAYLMQYQIPLAFALILALCLGAALGSVAGA
HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LRGWFNVPSFVATLGLWSALRGMGLFMTNALPVPIDENTVLDWLGGQVLGLPVSAVIMLI
HHHHCCHHHHHHHHHHHHHHHHCHHHHHCCCCCCCCCCCHHHHHCCCEECCCHHHHHHHH
LFVVFQFISKKTAFGRSVYAIGGNAGAAQLCGINVKRIRVLLFTLAGLLAAVTGILLAAR
HHHHHHHHHHHHHCCCEEEEECCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
LGSGNAGAASGLEFDVIAAVVVGGTALSGGRGSMLGTLLGVLVITLIGNGLVLLGINSFF
CCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEHHHHH
QQVVRGVIIVLAVLANIIVMQKNSKQ
HHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503 [H]