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The map label for this gene is xerC [H]

Identifier: 157372351

GI number: 157372351

Start: 4572097

End: 4573110

Strand: Reverse

Name: xerC [H]

Synonym: Spro_4117

Alternate gene names: 157372351

Gene position: 4573110-4572097 (Counterclockwise)

Preceding gene: 157372352

Following gene: 157372350

Centisome position: 83.93

GC content: 46.94

Gene sequence:

>1014_bases
ATGCATAAATCTTGTGTTATGGATTGGGACACCTTGCTAGAAGAGTATTTTTTCTCCAAGGCGTTACGCCCGGAAACTGA
AAGGAGCTATCGCAGAGTGGTTGCTGTTTTTAGGAAATTTATCGGGTACGAGACATTACCGGATGAAGTCACGAACCGAG
AACTGATTTTGTGGCGTAGGGACATGTTGGGGAGAGGGTTAACAACCAGTACGTGGAACAACAAAGCTCGCCATTTACGT
GCGATTTACAACCAGGGGATAAAGAAAAAATGGCTCAACGTAGTGGAAAATCCGCTAAATGAAACGCAAGTGCCGCCGGG
TAGCAAGCGTAAAAAAATTCTGAACCGTGACCAGTTGGTTAAAGTGAATCTGGCGTTAGAACAATTTGAAGAACGCGAAA
AGTTAAGGGTAGGTAAATGTCGTCCTTGTGCGCTCTTTCCTGTGTGGTATTGGCGGACTGTCATAGACGTCTTGCGTTCG
ACTGGGATGCGGCAAAACCAGTTATTACATATACGACTAATGGATGTAGATCTGGAGGCAAACTCGATGTTGCTGTGTAA
AGAAGGCAGTAAAACGCATCGCGAGTGGTTAGTTCCTATCGTGAGCTTTATCCGTGAACGGATGCGAATACTTGTTGATC
GCGCGATAGCACAGGGGGCCGAACCGGCAGATTATCTGTTCGATGTAGCGCGATTCTTGAATCCATTGGGTGAGGTTGAC
TCAGAGCCTGCAATCCAACCTGTTCGCTCATTCTTCACCAGGCTGACGAAAGAGTGTGGCTTTAAGGTGAGCCCGCATCG
ATTCAGGCATACCCTGGCTACCGAAATGATGAAGTCACCCGATCGTAATTTGGCAATGGTTAAAGGTTTGCTTGGACATA
GGAGCGTCAGCACAACAATGGAATATGTCGAACTGGATTTAAAGGTTACCGGTCAAGCGTTAGAGAATGAGCTGTCGCTG
TATATGGATGTGATACCCGCGCGTGAAAGTGAGGCCAGACTCGTCTTGACATGA

Upstream 100 bases:

>100_bases
CCGGACGATAGTCCGGTTCTGGTGATCCCTTGATAGGGATTAATCGTGTCTTGTGACTACATCATGTTCGCAAGATTTCT
ATTTAAACTAGGGAGATATC

Downstream 100 bases:

>100_bases
CTTTAACAAGCTGTAAAAATCAACAGTGATCGAGAAAAGGACGCTTGTGCGCGAACACAAGCATCCTTTTTAAGAGGAAC
CTAGTTATTAATATCGAGTG

Product: integrase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 337; Mature: 337

Protein sequence:

>337_residues
MHKSCVMDWDTLLEEYFFSKALRPETERSYRRVVAVFRKFIGYETLPDEVTNRELILWRRDMLGRGLTTSTWNNKARHLR
AIYNQGIKKKWLNVVENPLNETQVPPGSKRKKILNRDQLVKVNLALEQFEEREKLRVGKCRPCALFPVWYWRTVIDVLRS
TGMRQNQLLHIRLMDVDLEANSMLLCKEGSKTHREWLVPIVSFIRERMRILVDRAIAQGAEPADYLFDVARFLNPLGEVD
SEPAIQPVRSFFTRLTKECGFKVSPHRFRHTLATEMMKSPDRNLAMVKGLLGHRSVSTTMEYVELDLKVTGQALENELSL
YMDVIPARESEARLVLT

Sequences:

>Translated_337_residues
MHKSCVMDWDTLLEEYFFSKALRPETERSYRRVVAVFRKFIGYETLPDEVTNRELILWRRDMLGRGLTTSTWNNKARHLR
AIYNQGIKKKWLNVVENPLNETQVPPGSKRKKILNRDQLVKVNLALEQFEEREKLRVGKCRPCALFPVWYWRTVIDVLRS
TGMRQNQLLHIRLMDVDLEANSMLLCKEGSKTHREWLVPIVSFIRERMRILVDRAIAQGAEPADYLFDVARFLNPLGEVD
SEPAIQPVRSFFTRLTKECGFKVSPHRFRHTLATEMMKSPDRNLAMVKGLLGHRSVSTTMEYVELDLKVTGQALENELSL
YMDVIPARESEARLVLT
>Mature_337_residues
MHKSCVMDWDTLLEEYFFSKALRPETERSYRRVVAVFRKFIGYETLPDEVTNRELILWRRDMLGRGLTTSTWNNKARHLR
AIYNQGIKKKWLNVVENPLNETQVPPGSKRKKILNRDQLVKVNLALEQFEEREKLRVGKCRPCALFPVWYWRTVIDVLRS
TGMRQNQLLHIRLMDVDLEANSMLLCKEGSKTHREWLVPIVSFIRERMRILVDRAIAQGAEPADYLFDVARFLNPLGEVD
SEPAIQPVRSFFTRLTKECGFKVSPHRFRHTLATEMMKSPDRNLAMVKGLLGHRSVSTTMEYVELDLKVTGQALENELSL
YMDVIPARESEARLVLT

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerC subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109
- InterPro:   IPR004107 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 39379; Mature: 39379

Theoretical pI: Translated: 9.88; Mature: 9.88

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHKSCVMDWDTLLEEYFFSKALRPETERSYRRVVAVFRKFIGYETLPDEVTNRELILWRR
CCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCHHHCCCEEEEEEH
DMLGRGLTTSTWNNKARHLRAIYNQGIKKKWLNVVENPLNETQVPPGSKRKKILNRDQLV
HHHCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHCCHHHCCCCCCCHHHHHCCCCCEE
KVNLALEQFEEREKLRVGKCRPCALFPVWYWRTVIDVLRSTGMRQNQLLHIRLMDVDLEA
EHHHHHHHHHHHHHHCCCCCCCCEEHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEECC
NSMLLCKEGSKTHREWLVPIVSFIRERMRILVDRAIAQGAEPADYLFDVARFLNPLGEVD
CCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCC
SEPAIQPVRSFFTRLTKECGFKVSPHRFRHTLATEMMKSPDRNLAMVKGLLGHRSVSTTM
CCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHH
EYVELDLKVTGQALENELSLYMDVIPARESEARLVLT
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEC
>Mature Secondary Structure
MHKSCVMDWDTLLEEYFFSKALRPETERSYRRVVAVFRKFIGYETLPDEVTNRELILWRR
CCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCHHHCCCEEEEEEH
DMLGRGLTTSTWNNKARHLRAIYNQGIKKKWLNVVENPLNETQVPPGSKRKKILNRDQLV
HHHCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHCCHHHCCCCCCCHHHHHCCCCCEE
KVNLALEQFEEREKLRVGKCRPCALFPVWYWRTVIDVLRSTGMRQNQLLHIRLMDVDLEA
EHHHHHHHHHHHHHHCCCCCCCCEEHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEECC
NSMLLCKEGSKTHREWLVPIVSFIRERMRILVDRAIAQGAEPADYLFDVARFLNPLGEVD
CCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCC
SEPAIQPVRSFFTRLTKECGFKVSPHRFRHTLATEMMKSPDRNLAMVKGLLGHRSVSTTM
CCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHH
EYVELDLKVTGQALENELSLYMDVIPARESEARLVLT
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA