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The map label for this gene is ltrA [H]

Identifier: 157372074

GI number: 157372074

Start: 4249938

End: 4250846

Strand: Reverse

Name: ltrA [H]

Synonym: Spro_3839

Alternate gene names: 157372074

Gene position: 4250846-4249938 (Counterclockwise)

Preceding gene: 157372077

Following gene: 157372073

Centisome position: 78.01

GC content: 59.08

Gene sequence:

>909_bases
ATGGATCGCATCACCGCAGCTGAGGTTTTTATCACCATCGTTGACCGTGGCAGCATGATTGCGGCGGCAGAAACGCTGGA
AATGTCGCGAGCCATGGTGACGCGTTATCTGGCCCAGATGGAGCAATGGGCCGGGGCACGTTTGCTGCACCGTACTACCC
GTAAGCTTAGTCTGACTGACGCCGGTGAGCGTACATTAGAGCGTTGCCGACAGATGCTGGCGCTGGCGGGGGAAATAGAC
CTGGTCGAAGGGGAACAGAGTGATGAACTACGCGGCCTGCTGCGGATCACCTGCTCGCAGTCGCTGGGCCAGACGGCGCT
GGTGGGCGCGGTAGCACAATATCTGAAGCGTCATCCGCAGGTGGCTGTGGATCTGCAAATGAATAATCGCGCAGTGAATC
TGGTCGAAGAGCGTATCGATTTGGCGCTGCGAATTACCAACGAGCTGGATCCCAATCTGATCGCCCGCCCGCTCTCTTCC
TGCGCCTCGGTGGTCTGCGCTGCACCGGCCTATCTGGCGGCGCATGGCACGCCGCGCCATCCGCAGGATCTGGCGCTGCA
CAACTGCCTGACTTACTCCTACTTCGGTAAAAGCCTGTGGCATTTTGACCACCAGGGGGTGAAGTCGGCAGTCGCGGTCA
GCGGTAATCTGAGCGCCAATGAATCGGTGGTATTGATGGCGGGAACGGTGCAGGGGGCCGGGGTTTCCATGCAACCTTAT
TATTCGGCGGCACCGCTGCTGGCCAGTGGCGAACTGATTGAGCTGATGCCGGATTATCGGCCCCAGTCGATGGGCATTTA
TGGCATTTATACTTCGCGTCGGCAGATGCCGGCGACTCTGAGGACCATGTTGGACTTTTTAGTGGAGTGGTTTGCCACTG
ATGCCGGCTGGCGAGCGACGTTGCGCTGA

Upstream 100 bases:

>100_bases
TCCTTGGGTAGCGATTAAATGTTGTATAGATGTTAGGTTGCATAAAGCGATAGAAAAACCGGATAATGAGCAATTATTCA
TTGCGTAAATCGGACGAATC

Downstream 100 bases:

>100_bases
TATTATTAACGCCGCAGTAACATTTTCACACATTTTTCATCATTAGCGCATTCAAGCGGTTAGCGAGTTTACCGGGGCAT
TTTGTGCGCTGTCGCGGCTC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 302; Mature: 302

Protein sequence:

>302_residues
MDRITAAEVFITIVDRGSMIAAAETLEMSRAMVTRYLAQMEQWAGARLLHRTTRKLSLTDAGERTLERCRQMLALAGEID
LVEGEQSDELRGLLRITCSQSLGQTALVGAVAQYLKRHPQVAVDLQMNNRAVNLVEERIDLALRITNELDPNLIARPLSS
CASVVCAAPAYLAAHGTPRHPQDLALHNCLTYSYFGKSLWHFDHQGVKSAVAVSGNLSANESVVLMAGTVQGAGVSMQPY
YSAAPLLASGELIELMPDYRPQSMGIYGIYTSRRQMPATLRTMLDFLVEWFATDAGWRATLR

Sequences:

>Translated_302_residues
MDRITAAEVFITIVDRGSMIAAAETLEMSRAMVTRYLAQMEQWAGARLLHRTTRKLSLTDAGERTLERCRQMLALAGEID
LVEGEQSDELRGLLRITCSQSLGQTALVGAVAQYLKRHPQVAVDLQMNNRAVNLVEERIDLALRITNELDPNLIARPLSS
CASVVCAAPAYLAAHGTPRHPQDLALHNCLTYSYFGKSLWHFDHQGVKSAVAVSGNLSANESVVLMAGTVQGAGVSMQPY
YSAAPLLASGELIELMPDYRPQSMGIYGIYTSRRQMPATLRTMLDFLVEWFATDAGWRATLR
>Mature_302_residues
MDRITAAEVFITIVDRGSMIAAAETLEMSRAMVTRYLAQMEQWAGARLLHRTTRKLSLTDAGERTLERCRQMLALAGEID
LVEGEQSDELRGLLRITCSQSLGQTALVGAVAQYLKRHPQVAVDLQMNNRAVNLVEERIDLALRITNELDPNLIARPLSS
CASVVCAAPAYLAAHGTPRHPQDLALHNCLTYSYFGKSLWHFDHQGVKSAVAVSGNLSANESVVLMAGTVQGAGVSMQPY
YSAAPLLASGELIELMPDYRPQSMGIYGIYTSRRQMPATLRTMLDFLVEWFATDAGWRATLR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081978, Length=290, Percent_Identity=32.4137931034483, Blast_Score=166, Evalue=2e-42,
Organism=Escherichia coli, GI1789440, Length=287, Percent_Identity=29.9651567944251, Blast_Score=158, Evalue=5e-40,
Organism=Escherichia coli, GI1789639, Length=292, Percent_Identity=29.4520547945205, Blast_Score=150, Evalue=1e-37,
Organism=Escherichia coli, GI1786401, Length=292, Percent_Identity=31.5068493150685, Blast_Score=137, Evalue=6e-34,
Organism=Escherichia coli, GI145693193, Length=295, Percent_Identity=27.4576271186441, Blast_Score=136, Evalue=2e-33,
Organism=Escherichia coli, GI1787128, Length=287, Percent_Identity=27.5261324041812, Blast_Score=119, Evalue=2e-28,
Organism=Escherichia coli, GI1787589, Length=286, Percent_Identity=25.8741258741259, Blast_Score=99, Evalue=4e-22,
Organism=Escherichia coli, GI1788706, Length=285, Percent_Identity=25.6140350877193, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1790011, Length=276, Percent_Identity=24.2753623188406, Blast_Score=63, Evalue=3e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33256; Mature: 33256

Theoretical pI: Translated: 6.87; Mature: 6.87

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
6.0 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
6.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDRITAAEVFITIVDRGSMIAAAETLEMSRAMVTRYLAQMEQWAGARLLHRTTRKLSLTD
CCCCHHHHEEEEEECCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCC
AGERTLERCRQMLALAGEIDLVEGEQSDELRGLLRITCSQSLGQTALVGAVAQYLKRHPQ
CCHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCC
VAVDLQMNNRAVNLVEERIDLALRITNELDPNLIARPLSSCASVVCAAPAYLAAHGTPRH
EEEEEEECCHHHHHHHHHHHEEEEECCCCCHHHHHHHHHHHHHHHHHCCHHHHCCCCCCC
PQDLALHNCLTYSYFGKSLWHFDHQGVKSAVAVSGNLSANESVVLMAGTVQGAGVSMQPY
CHHHHHHHHHHHHHHHHHHHHCCHHHHHHHEEECCCCCCCCCEEEEEECCCCCCCCCCCC
YSAAPLLASGELIELMPDYRPQSMGIYGIYTSRRQMPATLRTMLDFLVEWFATDAGWRAT
CCCCCCCCCCCHHEECCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCEEC
LR
CC
>Mature Secondary Structure
MDRITAAEVFITIVDRGSMIAAAETLEMSRAMVTRYLAQMEQWAGARLLHRTTRKLSLTD
CCCCHHHHEEEEEECCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCC
AGERTLERCRQMLALAGEIDLVEGEQSDELRGLLRITCSQSLGQTALVGAVAQYLKRHPQ
CCHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCC
VAVDLQMNNRAVNLVEERIDLALRITNELDPNLIARPLSSCASVVCAAPAYLAAHGTPRH
EEEEEEECCHHHHHHHHHHHEEEEECCCCCHHHHHHHHHHHHHHHHHCCHHHHCCCCCCC
PQDLALHNCLTYSYFGKSLWHFDHQGVKSAVAVSGNLSANESVVLMAGTVQGAGVSMQPY
CHHHHHHHHHHHHHHHHHHHHCCHHHHHHHEEECCCCCCCCCEEEEEECCCCCCCCCCCC
YSAAPLLASGELIELMPDYRPQSMGIYGIYTSRRQMPATLRTMLDFLVEWFATDAGWRAT
CCCCCCCCCCCHHEECCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCEEC
LR
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8748036 [H]