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The map label for this gene is yjdL [H]

Identifier: 157372001

GI number: 157372001

Start: 4160169

End: 4161617

Strand: Reverse

Name: yjdL [H]

Synonym: Spro_3766

Alternate gene names: 157372001

Gene position: 4161617-4160169 (Counterclockwise)

Preceding gene: 157372002

Following gene: 157372000

Centisome position: 76.38

GC content: 57.9

Gene sequence:

>1449_bases
ATGAAAACACCCTCACAGCCGCGCGCAATCTACTATGTCGTAGCCATACAAATTTGGGAATATTTCAGCTTTTACGGCAT
GCGTGCGTTACTTATTCTCTATCTTACCCACCAACTTGGTTATTCCGATAGCCGCGCCATTAGCCTCTATAGCGCTTACG
CTTCTCTGGTCTATGTCACGCCGATCCTCGGCGGCCTGCTTGCCGATCGCCTGCTGGGCAACCGCGTAGCGGTCATTGCC
GGAGCGGTATTGATGACGCTGGGCCATATCGTGCTCGGCCTGAGCGCCGTATCGACACAATCACTCTATCTCTCGCTGTC
GATCATCATCTGTGGCTACGGCCTGTTTAAATCCAATATCAGCTGCCTGCTGGGCGAGTTGTATCAACCGCAGGACTCGC
GCCGGGAAGGGGGCTTTTCACTGCTGTATGCCGCCGGTAATGTCGGCTCGATCCTGGCGCCCATTGCCTGTGGGTTGGCG
GCAGAACGCTACGGCTGGCACGTCGGCTTTGCGCTGGCGGGTATCGGTATGCTGGCCGGGTTGACGATCTTCCTGTTCGG
CAGCCGTCATTTCAGCCATACGCGCGGTGTGGATCGGGCGCAGATGTGCGTCACCACGCTGCGGGTACCTAACTGGGTAT
GGCTTGGTGCCATGCTGCTGTTGGCCCCTCTGTTCTTCACTTCACTGTTCATTTACGACCTGGCCGGCCAATTACTGATG
CTGGTGTGTGCCGCCGCCGTCGTGATGGTGATCCGTATAATGGCCCGGGCTACAACAGTGCAGCGCCGTGGGCTGTGGCA
GATAGTGATGTTGATGCTGTTGGGCACCTTGTTCTGGGCCTTTGCCCAGCAGGGCGGTAGTTCGATCAGCCTGTTTATCG
ATCACTTTGTCGACCGCCAATGGTTTTCCTGGACGGTGCCGACCGCATTGTTCCAGTCGGTTAACGCTTTTGCCGTGATG
TTTGGCGGTGTGATGCTGGCCTGGCTGGTGCGGGGCAACGGCAATGGCAACCCCACTCTGCGGATTTGGGGAAAGTTCGC
CTTTGGTTTACTGCTGATTGGCGTGGGGTTTACCCTGATGGCGCTTAACGCCCGTTACGGCCAGGGCTCGATGAGCCTGA
TGATCGCCGGGCTGTCGGTGATGGGGCTTGCCGAACTGTTTATCGATCCGGTCGCCATGGCACAGATTACCCGGCTGAAT
ATCCCAGGCGCTACCGGGGTGCTGACTGGTATTTATATGCTGACTACCGGCTCGATAGCCAATTACCTGGCCGGTATTAT
CGCCGGCCAGACTGCAGAAGACCCGGCAACGGGGGCGACGGCGCAGGCCTATGTTCACCTGTTTGCTCAAATTGGCTGGT
GGGCGATGGGCTGTACGGCGGCAGTGGTGGCGGTGTTGGCCATGTGGTGGTTGCTGTCCGGCCGTCATATCCGTGCGGTT
AATGCTTGA

Upstream 100 bases:

>100_bases
TTACACCGTGAAGGTGTTGAAAAACGATAAATAAGTGAACTAACAAGGGGAGGCGCTTGCGCTTCCCCTTTTGTCGTTCC
CCGACTGATGGGAGAAAACC

Downstream 100 bases:

>100_bases
TTGATGGTATGACGGGGGTTAACGTGCAGCTATCTGGACGTCATTAAGCCTAATCAATGAATAACAATCAATTATCCGCA
CAGCTAGCCCGCCAATTGGG

Product: amino acid/peptide transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 482; Mature: 482

Protein sequence:

>482_residues
MKTPSQPRAIYYVVAIQIWEYFSFYGMRALLILYLTHQLGYSDSRAISLYSAYASLVYVTPILGGLLADRLLGNRVAVIA
GAVLMTLGHIVLGLSAVSTQSLYLSLSIIICGYGLFKSNISCLLGELYQPQDSRREGGFSLLYAAGNVGSILAPIACGLA
AERYGWHVGFALAGIGMLAGLTIFLFGSRHFSHTRGVDRAQMCVTTLRVPNWVWLGAMLLLAPLFFTSLFIYDLAGQLLM
LVCAAAVVMVIRIMARATTVQRRGLWQIVMLMLLGTLFWAFAQQGGSSISLFIDHFVDRQWFSWTVPTALFQSVNAFAVM
FGGVMLAWLVRGNGNGNPTLRIWGKFAFGLLLIGVGFTLMALNARYGQGSMSLMIAGLSVMGLAELFIDPVAMAQITRLN
IPGATGVLTGIYMLTTGSIANYLAGIIAGQTAEDPATGATAQAYVHLFAQIGWWAMGCTAAVVAVLAMWWLLSGRHIRAV
NA

Sequences:

>Translated_482_residues
MKTPSQPRAIYYVVAIQIWEYFSFYGMRALLILYLTHQLGYSDSRAISLYSAYASLVYVTPILGGLLADRLLGNRVAVIA
GAVLMTLGHIVLGLSAVSTQSLYLSLSIIICGYGLFKSNISCLLGELYQPQDSRREGGFSLLYAAGNVGSILAPIACGLA
AERYGWHVGFALAGIGMLAGLTIFLFGSRHFSHTRGVDRAQMCVTTLRVPNWVWLGAMLLLAPLFFTSLFIYDLAGQLLM
LVCAAAVVMVIRIMARATTVQRRGLWQIVMLMLLGTLFWAFAQQGGSSISLFIDHFVDRQWFSWTVPTALFQSVNAFAVM
FGGVMLAWLVRGNGNGNPTLRIWGKFAFGLLLIGVGFTLMALNARYGQGSMSLMIAGLSVMGLAELFIDPVAMAQITRLN
IPGATGVLTGIYMLTTGSIANYLAGIIAGQTAEDPATGATAQAYVHLFAQIGWWAMGCTAAVVAVLAMWWLLSGRHIRAV
NA
>Mature_482_residues
MKTPSQPRAIYYVVAIQIWEYFSFYGMRALLILYLTHQLGYSDSRAISLYSAYASLVYVTPILGGLLADRLLGNRVAVIA
GAVLMTLGHIVLGLSAVSTQSLYLSLSIIICGYGLFKSNISCLLGELYQPQDSRREGGFSLLYAAGNVGSILAPIACGLA
AERYGWHVGFALAGIGMLAGLTIFLFGSRHFSHTRGVDRAQMCVTTLRVPNWVWLGAMLLLAPLFFTSLFIYDLAGQLLM
LVCAAAVVMVIRIMARATTVQRRGLWQIVMLMLLGTLFWAFAQQGGSSISLFIDHFVDRQWFSWTVPTALFQSVNAFAVM
FGGVMLAWLVRGNGNGNPTLRIWGKFAFGLLLIGVGFTLMALNARYGQGSMSLMIAGLSVMGLAELFIDPVAMAQITRLN
IPGATGVLTGIYMLTTGSIANYLAGIIAGQTAEDPATGATAQAYVHLFAQIGWWAMGCTAAVVAVLAMWWLLSGRHIRAV
NA

Specific function: Probable proton-dependent permease that transports di- and tripeptides. Shows significantly higher specificity towards dipeptides [H]

COG id: COG3104

COG function: function code E; Dipeptide/tripeptide permease

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the PTR2/POT transporter (TC 2.A.17) family [H]

Homologues:

Organism=Homo sapiens, GI4827008, Length=208, Percent_Identity=28.8461538461538, Blast_Score=101, Evalue=2e-21,
Organism=Homo sapiens, GI226371746, Length=199, Percent_Identity=31.1557788944724, Blast_Score=88, Evalue=2e-17,
Organism=Homo sapiens, GI226371748, Length=191, Percent_Identity=29.8429319371728, Blast_Score=73, Evalue=5e-13,
Organism=Escherichia coli, GI1790572, Length=467, Percent_Identity=66.3811563169165, Blast_Score=606, Evalue=1e-175,
Organism=Escherichia coli, GI1786927, Length=487, Percent_Identity=59.1375770020534, Blast_Score=557, Evalue=1e-160,
Organism=Escherichia coli, GI1787922, Length=470, Percent_Identity=28.936170212766, Blast_Score=180, Evalue=2e-46,
Organism=Escherichia coli, GI1789911, Length=481, Percent_Identity=27.8586278586279, Blast_Score=175, Evalue=7e-45,
Organism=Caenorhabditis elegans, GI71987453, Length=160, Percent_Identity=31.25, Blast_Score=82, Evalue=7e-16,
Organism=Caenorhabditis elegans, GI17569141, Length=307, Percent_Identity=24.1042345276873, Blast_Score=76, Evalue=4e-14,
Organism=Drosophila melanogaster, GI24639585, Length=200, Percent_Identity=29.5, Blast_Score=84, Evalue=3e-16,
Organism=Drosophila melanogaster, GI24639583, Length=200, Percent_Identity=29.5, Blast_Score=84, Evalue=3e-16,
Organism=Drosophila melanogaster, GI24639581, Length=200, Percent_Identity=29.5, Blast_Score=83, Evalue=3e-16,
Organism=Drosophila melanogaster, GI28571098, Length=197, Percent_Identity=27.4111675126904, Blast_Score=78, Evalue=1e-14,
Organism=Drosophila melanogaster, GI28571102, Length=198, Percent_Identity=28.2828282828283, Blast_Score=78, Evalue=2e-14,
Organism=Drosophila melanogaster, GI28571100, Length=198, Percent_Identity=28.2828282828283, Blast_Score=78, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR016196
- InterPro:   IPR000109
- InterPro:   IPR005279
- InterPro:   IPR018456 [H]

Pfam domain/function: PF00854 PTR2 [H]

EC number: NA

Molecular weight: Translated: 52111; Mature: 52111

Theoretical pI: Translated: 9.58; Mature: 9.58

Prosite motif: PS50850 MFS ; PS01022 PTR2_1 ; PS01023 PTR2_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
4.4 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTPSQPRAIYYVVAIQIWEYFSFYGMRALLILYLTHQLGYSDSRAISLYSAYASLVYVT
CCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
PILGGLLADRLLGNRVAVIAGAVLMTLGHIVLGLSAVSTQSLYLSLSIIICGYGLFKSNI
HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SCLLGELYQPQDSRREGGFSLLYAAGNVGSILAPIACGLAAERYGWHVGFALAGIGMLAG
HHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
LTIFLFGSRHFSHTRGVDRAQMCVTTLRVPNWVWLGAMLLLAPLFFTSLFIYDLAGQLLM
HHHHHHCCCCCHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LVCAAAVVMVIRIMARATTVQRRGLWQIVMLMLLGTLFWAFAQQGGSSISLFIDHFVDRQ
HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHCCC
WFSWTVPTALFQSVNAFAVMFGGVMLAWLVRGNGNGNPTLRIWGKFAFGLLLIGVGFTLM
CCCEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHHHHHHHHHHH
ALNARYGQGSMSLMIAGLSVMGLAELFIDPVAMAQITRLNIPGATGVLTGIYMLTTGSIA
HHHCCCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHEECCCCCHHHHHHHHHHHCCHHH
NYLAGIIAGQTAEDPATGATAQAYVHLFAQIGWWAMGCTAAVVAVLAMWWLLSGRHIRAV
HHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEE
NA
CC
>Mature Secondary Structure
MKTPSQPRAIYYVVAIQIWEYFSFYGMRALLILYLTHQLGYSDSRAISLYSAYASLVYVT
CCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
PILGGLLADRLLGNRVAVIAGAVLMTLGHIVLGLSAVSTQSLYLSLSIIICGYGLFKSNI
HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SCLLGELYQPQDSRREGGFSLLYAAGNVGSILAPIACGLAAERYGWHVGFALAGIGMLAG
HHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
LTIFLFGSRHFSHTRGVDRAQMCVTTLRVPNWVWLGAMLLLAPLFFTSLFIYDLAGQLLM
HHHHHHCCCCCHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LVCAAAVVMVIRIMARATTVQRRGLWQIVMLMLLGTLFWAFAQQGGSSISLFIDHFVDRQ
HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHCCC
WFSWTVPTALFQSVNAFAVMFGGVMLAWLVRGNGNGNPTLRIWGKFAFGLLLIGVGFTLM
CCCEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHHHHHHHHHHH
ALNARYGQGSMSLMIAGLSVMGLAELFIDPVAMAQITRLNIPGATGVLTGIYMLTTGSIA
HHHCCCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHEECCCCCHHHHHHHHHHHCCHHH
NYLAGIIAGQTAEDPATGATAQAYVHLFAQIGWWAMGCTAAVVAVLAMWWLLSGRHIRAV
HHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEE
NA
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503 [H]