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The map label for this gene is abgR [H]

Identifier: 157371442

GI number: 157371442

Start: 3530730

End: 3531683

Strand: Reverse

Name: abgR [H]

Synonym: Spro_3205

Alternate gene names: 157371442

Gene position: 3531683-3530730 (Counterclockwise)

Preceding gene: 157371445

Following gene: 157371440

Centisome position: 64.82

GC content: 59.43

Gene sequence:

>954_bases
ATGAAACTACATCAGTTACAGGCCTTGGTCGCCAGTGCCGACGGTGGCAGCATCCGCGCCGCCGCACGCCAACTGGGGCT
TTCACAGGCGGCGGTCACGCGGGCCCTGCGAGAGCTGGAACAGCAGCAGGAACTGCCATTGCTGATCCGCACGCCGGCCG
GACTGGGTTTTACACCTTACGGGAAAACGCTGCTGGCACATGCCCGGTTAGTGTTGAACCAACTGGAACAGGCCAACAAT
GAAATGGCGGGCCTGCGCGGGCTGGCGCAAGAGCAGGTGAAGGTGGCGATCACGCCCTGGCTGATGTTGACGGTGTTACC
GGCGGCGGTGGTGGCCTTTCGCAAAAAGATGCCGAGGGTAAAACTGGAGCTGTTTGAAAGCCTGATGGCCAACGCCCAAT
CCCAACTGCGAGAGGGCACGATGGATTTTGCCATCACGCCGCTTCCGGCCTCGATGGCACCGCAGGAGTTTCATTGTGAA
CCGTTGCTGGACTATGAAACGGCGGTGATGGTGCGCCACGGGCATCCGTTGGGCCAAAGCACCTCAGTCCACCAGTTGTT
GGAGCAGGACTGGGTGCTGAACTATACGCCAGAAAATTATGACGATTTAATCCATCAACTGTTCAGCCGACACGGCGCTC
AGCTTGATCCGAACCGCATTATTCATGCGCATTCTCTTGGTATGTTACAGGCAATGGTGGAGTCGGCAGACATGTGCACC
TGGTGCCCGGCACCGTTGCTCGGGTTACCGCAGTTTGCCGGACGCCTGCAACCGCTGGCGCTACAGGAAGGCTGTGACCT
GGCGCGACTGAATATCGTCACCCGGCGTAACAGCATCCTCAGCACCGCCGCCCATGCGCTGATTGATAACCTTATCCGCA
CCCTGCGCCAGCACGCCCGCTCCGCGCGGCTCGAGGACCGACTGATTTACGACCGGGTGAGGTTGTTGATTTAG

Upstream 100 bases:

>100_bases
GATAACCGGGAACAAGGTACTTCGGAGACTAACAAACAACCTTTTGCCCGGGGAGCCGCCGTTCGGTTATGCTGACAACC
TTTGATTGTCAGGGGGCGTG

Downstream 100 bases:

>100_bases
GTGGAAGGGGGGCGGAGTTATTGGGATAGTTTTGGTTATTGTGGGGACGTCCTGGCCGTCGGCTTTGTGCCAAAAGCGGA
CGTTGATAACATCAGGATGT

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 317; Mature: 317

Protein sequence:

>317_residues
MKLHQLQALVASADGGSIRAAARQLGLSQAAVTRALRELEQQQELPLLIRTPAGLGFTPYGKTLLAHARLVLNQLEQANN
EMAGLRGLAQEQVKVAITPWLMLTVLPAAVVAFRKKMPRVKLELFESLMANAQSQLREGTMDFAITPLPASMAPQEFHCE
PLLDYETAVMVRHGHPLGQSTSVHQLLEQDWVLNYTPENYDDLIHQLFSRHGAQLDPNRIIHAHSLGMLQAMVESADMCT
WCPAPLLGLPQFAGRLQPLALQEGCDLARLNIVTRRNSILSTAAHALIDNLIRTLRQHARSARLEDRLIYDRVRLLI

Sequences:

>Translated_317_residues
MKLHQLQALVASADGGSIRAAARQLGLSQAAVTRALRELEQQQELPLLIRTPAGLGFTPYGKTLLAHARLVLNQLEQANN
EMAGLRGLAQEQVKVAITPWLMLTVLPAAVVAFRKKMPRVKLELFESLMANAQSQLREGTMDFAITPLPASMAPQEFHCE
PLLDYETAVMVRHGHPLGQSTSVHQLLEQDWVLNYTPENYDDLIHQLFSRHGAQLDPNRIIHAHSLGMLQAMVESADMCT
WCPAPLLGLPQFAGRLQPLALQEGCDLARLNIVTRRNSILSTAAHALIDNLIRTLRQHARSARLEDRLIYDRVRLLI
>Mature_317_residues
MKLHQLQALVASADGGSIRAAARQLGLSQAAVTRALRELEQQQELPLLIRTPAGLGFTPYGKTLLAHARLVLNQLEQANN
EMAGLRGLAQEQVKVAITPWLMLTVLPAAVVAFRKKMPRVKLELFESLMANAQSQLREGTMDFAITPLPASMAPQEFHCE
PLLDYETAVMVRHGHPLGQSTSVHQLLEQDWVLNYTPENYDDLIHQLFSRHGAQLDPNRIIHAHSLGMLQAMVESADMCT
WCPAPLLGLPQFAGRLQPLALQEGCDLARLNIVTRRNSILSTAAHALIDNLIRTLRQHARSARLEDRLIYDRVRLLI

Specific function: Could be the regulator of the abg operon [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787601, Length=293, Percent_Identity=26.2798634812287, Blast_Score=117, Evalue=7e-28,
Organism=Escherichia coli, GI1789506, Length=274, Percent_Identity=24.8175182481752, Blast_Score=117, Evalue=7e-28,
Organism=Escherichia coli, GI1790262, Length=184, Percent_Identity=28.804347826087, Blast_Score=75, Evalue=8e-15,
Organism=Escherichia coli, GI87081904, Length=249, Percent_Identity=26.5060240963855, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1788887, Length=185, Percent_Identity=28.1081081081081, Blast_Score=65, Evalue=7e-12,
Organism=Escherichia coli, GI1788748, Length=303, Percent_Identity=25.7425742574257, Blast_Score=64, Evalue=9e-12,
Organism=Escherichia coli, GI157672245, Length=290, Percent_Identity=23.7931034482759, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1788296, Length=180, Percent_Identity=29.4444444444444, Blast_Score=62, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 35290; Mature: 35290

Theoretical pI: Translated: 8.05; Mature: 8.05

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLHQLQALVASADGGSIRAAARQLGLSQAAVTRALRELEQQQELPLLIRTPAGLGFTPY
CCHHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCC
GKTLLAHARLVLNQLEQANNEMAGLRGLAQEQVKVAITPWLMLTVLPAAVVAFRKKMPRV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
KLELFESLMANAQSQLREGTMDFAITPLPASMAPQEFHCEPLLDYETAVMVRHGHPLGQS
HHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCHHHEEEEECCCCCCCC
TSVHQLLEQDWVLNYTPENYDDLIHQLFSRHGAQLDPNRIIHAHSLGMLQAMVESADMCT
HHHHHHHHHCCEEECCCCCHHHHHHHHHHHCCCCCCCCCEEHHHHHHHHHHHHHHCCCCC
WCPAPLLGLPQFAGRLQPLALQEGCDLARLNIVTRRNSILSTAAHALIDNLIRTLRQHAR
CCCCCCCCCHHHHCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SARLEDRLIYDRVRLLI
HHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MKLHQLQALVASADGGSIRAAARQLGLSQAAVTRALRELEQQQELPLLIRTPAGLGFTPY
CCHHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCC
GKTLLAHARLVLNQLEQANNEMAGLRGLAQEQVKVAITPWLMLTVLPAAVVAFRKKMPRV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
KLELFESLMANAQSQLREGTMDFAITPLPASMAPQEFHCEPLLDYETAVMVRHGHPLGQS
HHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCHHHEEEEECCCCCCCC
TSVHQLLEQDWVLNYTPENYDDLIHQLFSRHGAQLDPNRIIHAHSLGMLQAMVESADMCT
HHHHHHHHHCCEEECCCCCHHHHHHHHHHHCCCCCCCCCEEHHHHHHHHHHHHHHCCCCC
WCPAPLLGLPQFAGRLQPLALQEGCDLARLNIVTRRNSILSTAAHALIDNLIRTLRQHAR
CCCCCCCCCHHHHCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SARLEDRLIYDRVRLLI
HHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 9829935 [H]