Click here to switch to the map view.

The map label for this gene is ocd2 [H]

Identifier: 157371264

GI number: 157371264

Start: 3327653

End: 3328609

Strand: Reverse

Name: ocd2 [H]

Synonym: Spro_3024

Alternate gene names: 157371264

Gene position: 3328609-3327653 (Counterclockwise)

Preceding gene: 157371265

Following gene: 157371263

Centisome position: 61.09

GC content: 59.87

Gene sequence:

>957_bases
ATGACCATGTTAATCATCGACGCCGCTGAAATGGCGGGGGGTGATCGTCTGCGACAGGTGATGATCGCCCTGAGTGACGT
GTTCCAGGATTTACGCAGCGGTAAAGAACAATCACCGCCGCGCACCTTACTGGACCATGGCCGTTCAGAGATGCTGGTCA
GCCCGGCCAGCTGGCTGAAACGCGGTGTCGCCAGCGTCAAAATCACTACGCTCACGCCGGGTAATTCCGCTCACGGACTG
CCGCTGATCCACGGTGTGGTGGTGCTGACCGACATCAATACCGGCCAGATGCTGGCATTACTTGACGGCGCAAGCTTAAC
GGCAGTACGCACCGGCGCAGTGGCCGGTTTGGCGACCGACCTGTGTGCTAATGCCGATGCCGGCAACCTGGCCATTTTGG
GGGCCGGGGTACAGGCCCGGGCAGTGCTGCTGGCAATGCTTGCCGTTCGCCCGATCCGCAAGGTGCGAATCTTTTCCCGC
ACGCCGGCCAGAACCGAACGGTTCGTGCAGTGGGCGCGAACCGTTACGGCGGCAGAGGTTGCCATTTGCCATAGCGTGTT
CGAAGCCGTGCAGGAGGCGGATATCATCTGCACCACCACCTCAACTTCATCTTCCCAACCCTTGATTGAGGCCGATTGGG
TAACGCCGGGGGCGCATTTGAATATTATCGGCGGCACCCATGAAGAGGCTATTGAGGTGGATCCTGCCTTGCTGAAAACG
GCGTTTGTGGTGGTGGAAACCGCCGCTGCCGCCAGGGAGGACGCAGGAGAGGTGCGAACCGCCCTCACGCAGGGTTACCT
CCAGCCTGAAGATCTTAATGAACTTGGCGCCGTCATTCTTGGCGAGTCTGCTGCGGGCGAAGGGCAGACAACCTTGTTTC
GCAGTGTGGGGCTGGCGATTGAAGACACGGCCGCCGCGATCGCACTCTATCCATCCACAGAGAAGAGACCATGCTAA

Upstream 100 bases:

>100_bases
ATGCGCGCGATGTCTTCTTCGAACTGGGACGACGACAAATTATTGCCGGGCAGGAAGACCTGATCGTTGAGGTTGTCGCC
GAACTGAAGAGGGCGGCCTC

Downstream 100 bases:

>100_bases
GACGAGTTGGCGAAAATGAGTACGTTGAAGAACACGGTGGCGACTACGAGGACTTCGAGCCTGGCATGACCATCAAACAC
TGGCCGGGGCGCACGCTTTC

Product: ornithine cyclodeaminase

Products: NA

Alternate protein names: OCD 2 [H]

Number of amino acids: Translated: 318; Mature: 317

Protein sequence:

>318_residues
MTMLIIDAAEMAGGDRLRQVMIALSDVFQDLRSGKEQSPPRTLLDHGRSEMLVSPASWLKRGVASVKITTLTPGNSAHGL
PLIHGVVVLTDINTGQMLALLDGASLTAVRTGAVAGLATDLCANADAGNLAILGAGVQARAVLLAMLAVRPIRKVRIFSR
TPARTERFVQWARTVTAAEVAICHSVFEAVQEADIICTTTSTSSSQPLIEADWVTPGAHLNIIGGTHEEAIEVDPALLKT
AFVVVETAAAAREDAGEVRTALTQGYLQPEDLNELGAVILGESAAGEGQTTLFRSVGLAIEDTAAAIALYPSTEKRPC

Sequences:

>Translated_318_residues
MTMLIIDAAEMAGGDRLRQVMIALSDVFQDLRSGKEQSPPRTLLDHGRSEMLVSPASWLKRGVASVKITTLTPGNSAHGL
PLIHGVVVLTDINTGQMLALLDGASLTAVRTGAVAGLATDLCANADAGNLAILGAGVQARAVLLAMLAVRPIRKVRIFSR
TPARTERFVQWARTVTAAEVAICHSVFEAVQEADIICTTTSTSSSQPLIEADWVTPGAHLNIIGGTHEEAIEVDPALLKT
AFVVVETAAAAREDAGEVRTALTQGYLQPEDLNELGAVILGESAAGEGQTTLFRSVGLAIEDTAAAIALYPSTEKRPC
>Mature_317_residues
TMLIIDAAEMAGGDRLRQVMIALSDVFQDLRSGKEQSPPRTLLDHGRSEMLVSPASWLKRGVASVKITTLTPGNSAHGLP
LIHGVVVLTDINTGQMLALLDGASLTAVRTGAVAGLATDLCANADAGNLAILGAGVQARAVLLAMLAVRPIRKVRIFSRT
PARTERFVQWARTVTAAEVAICHSVFEAVQEADIICTTTSTSSSQPLIEADWVTPGAHLNIIGGTHEEAIEVDPALLKTA
FVVVETAAAAREDAGEVRTALTQGYLQPEDLNELGAVILGESAAGEGQTTLFRSVGLAIEDTAAAIALYPSTEKRPC

Specific function: Unknown

COG id: COG2423

COG function: function code E; Predicted ornithine cyclodeaminase, mu-crystallin homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ornithine cyclodeaminase family [H]

Homologues:

Organism=Homo sapiens, GI62241008, Length=245, Percent_Identity=37.9591836734694, Blast_Score=136, Evalue=2e-32,
Organism=Homo sapiens, GI4503065, Length=315, Percent_Identity=34.2857142857143, Blast_Score=136, Evalue=2e-32,
Organism=Drosophila melanogaster, GI24642678, Length=262, Percent_Identity=30.9160305343511, Blast_Score=99, Evalue=4e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016040
- InterPro:   IPR003462 [H]

Pfam domain/function: PF02423 OCD_Mu_crystall [H]

EC number: =4.3.1.12 [H]

Molecular weight: Translated: 33366; Mature: 33234

Theoretical pI: Translated: 4.90; Mature: 4.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTMLIIDAAEMAGGDRLRQVMIALSDVFQDLRSGKEQSPPRTLLDHGRSEMLVSPASWLK
CEEEEEEHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCCCEEECHHHHHH
RGVASVKITTLTPGNSAHGLPLIHGVVVLTDINTGQMLALLDGASLTAVRTGAVAGLATD
CCCCEEEEEEECCCCCCCCCHHEEEEEEEEECCCCCEEEEECCCCEEEEHHHHHHHHHHH
LCANADAGNLAILGAGVQARAVLLAMLAVRPIRKVRIFSRTPARTERFVQWARTVTAAEV
HHCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHEEEECCCCHHHHHHHHHHHHHHHHHH
AICHSVFEAVQEADIICTTTSTSSSQPLIEADWVTPGAHLNIIGGTHEEAIEVDPALLKT
HHHHHHHHHHHHCCEEEEECCCCCCCCCEEECCCCCCCEEEEECCCCCHHHCCCHHHHHH
AFVVVETAAAAREDAGEVRTALTQGYLQPEDLNELGAVILGESAAGEGQTTLFRSVGLAI
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCEEECCCCCCCCHHHHHHHHCCEE
EDTAAAIALYPSTEKRPC
ECCCEEEEECCCCCCCCC
>Mature Secondary Structure 
TMLIIDAAEMAGGDRLRQVMIALSDVFQDLRSGKEQSPPRTLLDHGRSEMLVSPASWLK
EEEEEEHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCCCEEECHHHHHH
RGVASVKITTLTPGNSAHGLPLIHGVVVLTDINTGQMLALLDGASLTAVRTGAVAGLATD
CCCCEEEEEEECCCCCCCCCHHEEEEEEEEECCCCCEEEEECCCCEEEEHHHHHHHHHHH
LCANADAGNLAILGAGVQARAVLLAMLAVRPIRKVRIFSRTPARTERFVQWARTVTAAEV
HHCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHEEEECCCCHHHHHHHHHHHHHHHHHH
AICHSVFEAVQEADIICTTTSTSSSQPLIEADWVTPGAHLNIIGGTHEEAIEVDPALLKT
HHHHHHHHHHHHCCEEEEECCCCCCCCCEEECCCCCCCEEEEECCCCCHHHCCCHHHHHH
AFVVVETAAAAREDAGEVRTALTQGYLQPEDLNELGAVILGESAAGEGQTTLFRSVGLAI
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCEEECCCCCCCCHHHHHHHHCCEE
EDTAAAIALYPSTEKRPC
ECCCEEEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11481432 [H]