Click here to switch to the map view.

The map label for this gene is ydjH [H]

Identifier: 157369277

GI number: 157369277

Start: 1136325

End: 1137338

Strand: Direct

Name: ydjH [H]

Synonym: Spro_1034

Alternate gene names: 157369277

Gene position: 1136325-1137338 (Clockwise)

Preceding gene: 157369276

Following gene: 157369279

Centisome position: 20.85

GC content: 61.64

Gene sequence:

>1014_bases
ATGAGCCGGCGTGGCATTGTTTCGGCCGGCAATATGCTGGTGGATCATGTGCATCAAATTGCACACTGGCCGCAGCCGGG
CTGGCTGGTTGAGATTGAACATAGCCAACGTGCGACCGGCGGTGCGCCGCTTAATGTGTTGCTGACGCTGGCACGCATGG
AGACCGGGTTACCGCTGGCGGCGCTCGGGTTGATCGGCAGCGATGCAGACGGTGACTACATTCTGCAAATGCTGGCGCAG
CACCGGGTCGACAGTGGCCTGGTCAGACGCAGCGAAACGGCGATGACCGCCATGTCGCAAGTGATGACAGAGCCGGGCGG
GCAACGGACGTTTTTTCACGCGCCGGGGGCCAACCGGCAGTTGGATCTGGCCGATTTCGACCAACTGCACAGTGAACATA
AAATTTTCCATCTGGGTTATCTGCTGCTGCTCGACAGCCTGGATCGCCCGGACGAGGAGTTTGGCACCCGCAGCGCCCGC
CTGCTGGCGCAAATGCAGCAGCGTGGTTATCAAACTTCATTGGATTTAGTGTCGCGCCAGGGCGATCCGCGCTATCGGCC
GCTGGTGCTACCGGCGCTGCGCTGGCTGGATTATCTGGTGATCAACGAGCTGGAGGCCGGTGAGTTTACCGGGCTGGCAT
TGCGTGCGGCCAATGGTGCGGTACAACCGCAGTTGATGGCCGAGGCCGCAGAACAGCTATTGCTGGCCGGTGTGCGGCGG
CGAGTGGTGATCCACTGCCCGGAAGGTGCATATGGACTGGAGAAAGGCGGTGAAGCGCGCTGGCAACCGTCGTGGCAGGT
TGGCGAAACTGAAATCGTCGGCAGCGTCGGTGCCGGGGATGCCTTCTGCGCCGGGGTGCTGTACGCCAGCCATGAAAACT
GGCCTTTGGCAGAGACGCTGCAATTGGCGCATGCCTGTGCGCGGTTCAATCTACTGTGCGCCAACGCGATCGATGGCGCA
CGCCCCTTGTCGGAACTGCAGGATTATATCAGGCGGCAGCCACCGGCTGGCTGA

Upstream 100 bases:

>100_bases
TTTACGATGAATTCGCCGAAGTGTTGCTGGCGGTGGAGCAGTCGATCAGCGAAGTGGTGCAGCAGCAAATGCATATTTTC
GGCAGCGCCGGGCGGTTGTG

Downstream 100 bases:

>100_bases
CGTCGGCGGCGAAAACATAGCCCAGCCCGCGAATGGTGCGGATCAACTCGGGTTGATGCGGATTAATCTCGATCTTGCGT
CGTAGCCGCATGATCAGCAC

Product: ribokinase-like domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 337; Mature: 336

Protein sequence:

>337_residues
MSRRGIVSAGNMLVDHVHQIAHWPQPGWLVEIEHSQRATGGAPLNVLLTLARMETGLPLAALGLIGSDADGDYILQMLAQ
HRVDSGLVRRSETAMTAMSQVMTEPGGQRTFFHAPGANRQLDLADFDQLHSEHKIFHLGYLLLLDSLDRPDEEFGTRSAR
LLAQMQQRGYQTSLDLVSRQGDPRYRPLVLPALRWLDYLVINELEAGEFTGLALRAANGAVQPQLMAEAAEQLLLAGVRR
RVVIHCPEGAYGLEKGGEARWQPSWQVGETEIVGSVGAGDAFCAGVLYASHENWPLAETLQLAHACARFNLLCANAIDGA
RPLSELQDYIRRQPPAG

Sequences:

>Translated_337_residues
MSRRGIVSAGNMLVDHVHQIAHWPQPGWLVEIEHSQRATGGAPLNVLLTLARMETGLPLAALGLIGSDADGDYILQMLAQ
HRVDSGLVRRSETAMTAMSQVMTEPGGQRTFFHAPGANRQLDLADFDQLHSEHKIFHLGYLLLLDSLDRPDEEFGTRSAR
LLAQMQQRGYQTSLDLVSRQGDPRYRPLVLPALRWLDYLVINELEAGEFTGLALRAANGAVQPQLMAEAAEQLLLAGVRR
RVVIHCPEGAYGLEKGGEARWQPSWQVGETEIVGSVGAGDAFCAGVLYASHENWPLAETLQLAHACARFNLLCANAIDGA
RPLSELQDYIRRQPPAG
>Mature_336_residues
SRRGIVSAGNMLVDHVHQIAHWPQPGWLVEIEHSQRATGGAPLNVLLTLARMETGLPLAALGLIGSDADGDYILQMLAQH
RVDSGLVRRSETAMTAMSQVMTEPGGQRTFFHAPGANRQLDLADFDQLHSEHKIFHLGYLLLLDSLDRPDEEFGTRSARL
LAQMQQRGYQTSLDLVSRQGDPRYRPLVLPALRWLDYLVINELEAGEFTGLALRAANGAVQPQLMAEAAEQLLLAGVRRR
VVIHCPEGAYGLEKGGEARWQPSWQVGETEIVGSVGAGDAFCAGVLYASHENWPLAETLQLAHACARFNLLCANAIDGAR
PLSELQDYIRRQPPAG

Specific function: Unknown

COG id: COG0524

COG function: function code G; Sugar kinases, ribokinase family

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the carbohydrate kinase pfkB family [H]

Homologues:

Organism=Escherichia coli, GI87081971, Length=334, Percent_Identity=23.0538922155689, Blast_Score=70, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17532905, Length=303, Percent_Identity=25.0825082508251, Blast_Score=65, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011611
- InterPro:   IPR002173
- InterPro:   IPR002139 [H]

Pfam domain/function: PF00294 PfkB [H]

EC number: NA

Molecular weight: Translated: 36948; Mature: 36816

Theoretical pI: Translated: 5.91; Mature: 5.91

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRRGIVSAGNMLVDHVHQIAHWPQPGWLVEIEHSQRATGGAPLNVLLTLARMETGLPLA
CCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCHH
ALGLIGSDADGDYILQMLAQHRVDSGLVRRSETAMTAMSQVMTEPGGQRTFFHAPGANRQ
HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCE
LDLADFDQLHSEHKIFHLGYLLLLDSLDRPDEEFGTRSARLLAQMQQRGYQTSLDLVSRQ
ECHHHHHHHHHHCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHCC
GDPRYRPLVLPALRWLDYLVINELEAGEFTGLALRAANGAVQPQLMAEAAEQLLLAGVRR
CCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHC
RVVIHCPEGAYGLEKGGEARWQPSWQVGETEIVGSVGAGDAFCAGVLYASHENWPLAETL
EEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHEECCCCCCHHHHH
QLAHACARFNLLCANAIDGARPLSELQDYIRRQPPAG
HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCC
>Mature Secondary Structure 
SRRGIVSAGNMLVDHVHQIAHWPQPGWLVEIEHSQRATGGAPLNVLLTLARMETGLPLA
CCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCHH
ALGLIGSDADGDYILQMLAQHRVDSGLVRRSETAMTAMSQVMTEPGGQRTFFHAPGANRQ
HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCE
LDLADFDQLHSEHKIFHLGYLLLLDSLDRPDEEFGTRSARLLAQMQQRGYQTSLDLVSRQ
ECHHHHHHHHHHCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHCC
GDPRYRPLVLPALRWLDYLVINELEAGEFTGLALRAANGAVQPQLMAEAAEQLLLAGVRR
CCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHC
RVVIHCPEGAYGLEKGGEARWQPSWQVGETEIVGSVGAGDAFCAGVLYASHENWPLAETL
EEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHEECCCCCCHHHHH
QLAHACARFNLLCANAIDGARPLSELQDYIRRQPPAG
HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]