| Definition | Serratia proteamaculans 568 chromosome, complete genome. |
|---|---|
| Accession | NC_009832 |
| Length | 5,448,853 |
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The map label for this gene is fct [H]
Identifier: 157369259
GI number: 157369259
Start: 1116754
End: 1118877
Strand: Direct
Name: fct [H]
Synonym: Spro_1016
Alternate gene names: 157369259
Gene position: 1116754-1118877 (Clockwise)
Preceding gene: 157369258
Following gene: 157369260
Centisome position: 20.5
GC content: 58.8
Gene sequence:
>2124_bases ATGAATAACACCCAACGTGGCTGGTGGTGTGCACTGCCTCTGGCGGCCTGCGCCTGTGTACCGGCGATCGGTGCCGATAA AACCGCAGAGAAGGGCGAAACCCTGGTGGTGGTTGGCCAGGCACAGGCCGATGGCGTACAAAGCTATCAGCCGCTGACCA GCGTGACCGGCACCCGCACGGAAACCAGCCTGCTGGACGTGCCGCAGGCTATCGACGTGGTGCCGCAGCAGGTGATTACC GATCAGGCGGTCAGCAGCCTGGATGAGGCGCTGTATAACGTCAGCGGCATCACTCAGGCGAATACGTTGGGGGGGACTCA GGACGCGGTAATGAAGCGTGGTTTTGGCGATAACCGCGACGGCTCAATTCTGCGCGACGGCGTGCGCTCGGTGCAGGCAC GTAACTTTACCCCAACCACCGAACGGGTTGAGGTGCTGAAAGGCCCGGCCTCGATGTTGTACGGTATGGGTGAACCGGGC GGGATGATCAATATGATCACCAAAAAGCCGCAGCTGCAGCAGCATACCCATGTGGAAGGCTGGGGCAGCAGCTTCAAGGG CGGTGGCGGCCAGTTGGACGTTACCGGGCCGCTGGGGACTTCAGGATTCGCTTATCGGATGATTGTCGATCACGACGAAA CAGACTACTGGCGTAACTTCGGCCGCAACCGTCAGACGGTGATCGCACCGTCGCTGATGTGGTTCGGCGAGAGCACCACG GTGCGCGTTGCCTACGAGCATATGGAGTATTTGGTGCCGTTCGATCGCGGTACCATCATCGATTCGCGTACCGGCAAACC GGTGAATACGCCGCGCGATCGTCGCTTCGACGAAAGCTATAACGCCACGCGTGGCGATCAGGACAGCGTTACCCTGCAGG TTGATCAGGTGTTGAACGAGAGCTGGAAAAGCTCACTGACCTACGCCTACAGTCGCAACAGCTACAGCGACAACCAGGCA CGTGCGTTGGCTCTGGATCCTGAAACCGGCGTGCTGTCGCGCCAGGCCGACTCCACCGCCCATGCGGTCAGCCATGCCAA CGCGGTGCAGTTGACGCTCAACGGTGACGTCGACTGGGGCAGCATCAACCACCAAATGCTGTTCGGCTTTGATTTTGAAG ATAATCGCACCTATCGCGGCGATATGATCCGCGGCAAGAAGAACAGTGATTTCAATATCTACAACCCTGTTTACGGCCAG ATGCCTACCTCGAACGCCGTCAGCGCCAAAGACAGCGATCAGCGTGAAAACCTCACCAGCTACGGCTGGTTTATGCAGGA CTCCGTGCAACTGACCGATAAATGGCTGGTGATGGGCGGACTGCGTTACGACGCCTTTGACGTGTTTGCCGGCAAAGGGC GGCCGTTTGTCACCAATACCGACAGCTCCGATGGCAAACTGGTGCCCCGCGCCGGGGTGGTCTACAAGCTGACGCCGTAT GTGTCGCTGTACAGCAGCTATACCGAGTCTTTCAAACCAAACTCTTCTATCGCCAGCCAGATTGGTTCGCTACCGCCGGA ACAGGGCAAGGCCTGGGAAATGGGCAGCAAGGTTGAGTTGCCGAACGGTGTCACCGGGACCCTGGCCTTGTTCGATATCA CCAAACGCAACGTGATGGTCAGCGAACTGGTGAATGGCGAAACCGTGACCCGCACCGCCGGGCGCGTGCGCTCGCAAGGG GTGGAGCTGGATGTCGCAGGCAATATTACCGACTCGCTGAGCCTGATCGGTTCTTATGCCTATACCGATGCGCGGGTGGT GGACGACCCGGACAACAAGGGCAAGGAAATGACCAACGTGGCACGCCACACGGCTTCACTGTTCCTGACGCAGGATTTGG GTTCCCCAAGGCTATACAGCGGAGACAACCTGCGCATGGGAGCCGGTGCGCGTTATGTGGGCCGCCGCCCTGGCGATGCT GCCAACAGTTTTAATCTTGATAACTACACCGTCGCCGATGCCTTCGCCGCTTACATCATGCCGGTCAATGGCTACCGGGT GAAATGGCAGTTGAACGTGAAGAACCTGTTCGACAAAACCTATTATCCTTCCAGCGGCGGCAATTTGCGTGTGGCGGTGG GGGAACCACGTGAAGTGGTGCTGCGTGCCAGCGTCGACTTCTAA
Upstream 100 bases:
>100_bases GATCTGTTTGCAGACATCAACCCGCAGCAGACCTTTAAGCAGTTATATCAACAATTTTTGCCGTTACCTTTTTCAGGGAC CTATTGGAGTCAGTTAAATA
Downstream 100 bases:
>100_bases TTTGGTGGGCTGGGAAGCCAGTCCGGCGGCGGGTATCTGCCGTCGGATAAATCTGGTTAAATAGCCGGCCTGTTGTTAAG GAGGATCCGATGAGCCTGAA
Product: TonB-dependent siderophore receptor
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 707; Mature: 707
Protein sequence:
>707_residues MNNTQRGWWCALPLAACACVPAIGADKTAEKGETLVVVGQAQADGVQSYQPLTSVTGTRTETSLLDVPQAIDVVPQQVIT DQAVSSLDEALYNVSGITQANTLGGTQDAVMKRGFGDNRDGSILRDGVRSVQARNFTPTTERVEVLKGPASMLYGMGEPG GMINMITKKPQLQQHTHVEGWGSSFKGGGGQLDVTGPLGTSGFAYRMIVDHDETDYWRNFGRNRQTVIAPSLMWFGESTT VRVAYEHMEYLVPFDRGTIIDSRTGKPVNTPRDRRFDESYNATRGDQDSVTLQVDQVLNESWKSSLTYAYSRNSYSDNQA RALALDPETGVLSRQADSTAHAVSHANAVQLTLNGDVDWGSINHQMLFGFDFEDNRTYRGDMIRGKKNSDFNIYNPVYGQ MPTSNAVSAKDSDQRENLTSYGWFMQDSVQLTDKWLVMGGLRYDAFDVFAGKGRPFVTNTDSSDGKLVPRAGVVYKLTPY VSLYSSYTESFKPNSSIASQIGSLPPEQGKAWEMGSKVELPNGVTGTLALFDITKRNVMVSELVNGETVTRTAGRVRSQG VELDVAGNITDSLSLIGSYAYTDARVVDDPDNKGKEMTNVARHTASLFLTQDLGSPRLYSGDNLRMGAGARYVGRRPGDA ANSFNLDNYTVADAFAAYIMPVNGYRVKWQLNVKNLFDKTYYPSSGGNLRVAVGEPREVVLRASVDF
Sequences:
>Translated_707_residues MNNTQRGWWCALPLAACACVPAIGADKTAEKGETLVVVGQAQADGVQSYQPLTSVTGTRTETSLLDVPQAIDVVPQQVIT DQAVSSLDEALYNVSGITQANTLGGTQDAVMKRGFGDNRDGSILRDGVRSVQARNFTPTTERVEVLKGPASMLYGMGEPG GMINMITKKPQLQQHTHVEGWGSSFKGGGGQLDVTGPLGTSGFAYRMIVDHDETDYWRNFGRNRQTVIAPSLMWFGESTT VRVAYEHMEYLVPFDRGTIIDSRTGKPVNTPRDRRFDESYNATRGDQDSVTLQVDQVLNESWKSSLTYAYSRNSYSDNQA RALALDPETGVLSRQADSTAHAVSHANAVQLTLNGDVDWGSINHQMLFGFDFEDNRTYRGDMIRGKKNSDFNIYNPVYGQ MPTSNAVSAKDSDQRENLTSYGWFMQDSVQLTDKWLVMGGLRYDAFDVFAGKGRPFVTNTDSSDGKLVPRAGVVYKLTPY VSLYSSYTESFKPNSSIASQIGSLPPEQGKAWEMGSKVELPNGVTGTLALFDITKRNVMVSELVNGETVTRTAGRVRSQG VELDVAGNITDSLSLIGSYAYTDARVVDDPDNKGKEMTNVARHTASLFLTQDLGSPRLYSGDNLRMGAGARYVGRRPGDA ANSFNLDNYTVADAFAAYIMPVNGYRVKWQLNVKNLFDKTYYPSSGGNLRVAVGEPREVVLRASVDF >Mature_707_residues MNNTQRGWWCALPLAACACVPAIGADKTAEKGETLVVVGQAQADGVQSYQPLTSVTGTRTETSLLDVPQAIDVVPQQVIT DQAVSSLDEALYNVSGITQANTLGGTQDAVMKRGFGDNRDGSILRDGVRSVQARNFTPTTERVEVLKGPASMLYGMGEPG GMINMITKKPQLQQHTHVEGWGSSFKGGGGQLDVTGPLGTSGFAYRMIVDHDETDYWRNFGRNRQTVIAPSLMWFGESTT VRVAYEHMEYLVPFDRGTIIDSRTGKPVNTPRDRRFDESYNATRGDQDSVTLQVDQVLNESWKSSLTYAYSRNSYSDNQA RALALDPETGVLSRQADSTAHAVSHANAVQLTLNGDVDWGSINHQMLFGFDFEDNRTYRGDMIRGKKNSDFNIYNPVYGQ MPTSNAVSAKDSDQRENLTSYGWFMQDSVQLTDKWLVMGGLRYDAFDVFAGKGRPFVTNTDSSDGKLVPRAGVVYKLTPY VSLYSSYTESFKPNSSIASQIGSLPPEQGKAWEMGSKVELPNGVTGTLALFDITKRNVMVSELVNGETVTRTAGRVRSQG VELDVAGNITDSLSLIGSYAYTDARVVDDPDNKGKEMTNVARHTASLFLTQDLGSPRLYSGDNLRMGAGARYVGRRPGDA ANSFNLDNYTVADAFAAYIMPVNGYRVKWQLNVKNLFDKTYYPSSGGNLRVAVGEPREVVLRASVDF
Specific function: Involved in the initial step of iron uptake by binding chrysobactin, an iron chelatin siderophore that allows the bacteria to extract iron from the environment [H]
COG id: COG1629
COG function: function code P; Outer membrane receptor proteins, mostly Fe transport
Gene ontology:
Cell location: Cell outer membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the tonB-dependent receptor family [H]
Homologues:
Organism=Escherichia coli, GI1786344, Length=753, Percent_Identity=26.9588313413015, Blast_Score=187, Evalue=3e-48, Organism=Escherichia coli, GI1787024, Length=773, Percent_Identity=25.8732212160414, Blast_Score=131, Evalue=2e-31, Organism=Escherichia coli, GI1787344, Length=742, Percent_Identity=23.989218328841, Blast_Score=125, Evalue=1e-29, Organism=Escherichia coli, GI1787723, Length=676, Percent_Identity=24.112426035503, Blast_Score=85, Evalue=1e-17, Organism=Escherichia coli, GI1790743, Length=332, Percent_Identity=25.6024096385542, Blast_Score=84, Evalue=5e-17, Organism=Escherichia coli, GI1788478, Length=174, Percent_Identity=32.183908045977, Blast_Score=66, Evalue=8e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012910 - InterPro: IPR000531 - InterPro: IPR010916 - InterPro: IPR010105 [H]
Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]
EC number: NA
Molecular weight: Translated: 77426; Mature: 77426
Theoretical pI: Translated: 5.44; Mature: 5.44
Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS00430 TONB_DEPENDENT_REC_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNNTQRGWWCALPLAACACVPAIGADKTAEKGETLVVVGQAQADGVQSYQPLTSVTGTRT CCCCCCCEEEEHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCHHHCCCCCC ETSLLDVPQAIDVVPQQVITDQAVSSLDEALYNVSGITQANTLGGTQDAVMKRGFGDNRD CHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCCCCCC GSILRDGVRSVQARNFTPTTERVEVLKGPASMLYGMGEPGGMINMITKKPQLQQHTHVEG CHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHCCCCCCCCEEEEECCCCCHHHCCCCCC WGSSFKGGGGQLDVTGPLGTSGFAYRMIVDHDETDYWRNFGRNRQTVIAPSLMWFGESTT CCCCCCCCCCEEEECCCCCCCCEEEEEEEECCCCHHHHHCCCCCCEEEECEEEEECCCCE VRVAYEHMEYLVPFDRGTIIDSRTGKPVNTPRDRRFDESYNATRGDQDSVTLQVDQVLNE EEEEEEEEHEEEECCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEHHHHHHH SWKSSLTYAYSRNSYSDNQARALALDPETGVLSRQADSTAHAVSHANAVQLTLNGDVDWG HHHHCEEEEEECCCCCCCCCEEEEECCCCCCCCCCCCCHHHHHCCCCEEEEEECCCCCCC SINHQMLFGFDFEDNRTYRGDMIRGKKNSDFNIYNPVYGQMPTSNAVSAKDSDQRENLTS CCCCEEEEEEECCCCCEEECCEEECCCCCCCEEECCCCCCCCCCCCCCCCCCHHHHCHHH YGWFMQDSVQLTDKWLVMGGLRYDAFDVFAGKGRPFVTNTDSSDGKLVPRAGVVYKLTPY HCEEECCCEEECEEEEEECCCEECEEEEECCCCCCEEECCCCCCCEEEECCCEEEEECHH VSLYSSYTESFKPNSSIASQIGSLPPEQGKAWEMGSKVELPNGVTGTLALFDITKRNVMV HHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCCCCEEECCCCCEEEEEEEEECCCCEEH SELVNGETVTRTAGRVRSQGVELDVAGNITDSLSLIGSYAYTDARVVDDPDNKGKEMTNV HHHCCCCEEEHHHHHHHHCCEEEEECCCCHHHHHHHHHHHCCCCEEECCCCCCCHHHHHH ARHTASLFLTQDLGSPRLYSGDNLRMGAGARYVGRRPGDAANSFNLDNYTVADAFAAYIM HHHHHEEEEEECCCCCCEECCCCEEECCCCCCCCCCCCCCCCCCCCCCEEHHHHHEEEEE PVNGYRVKWQLNVKNLFDKTYYPSSGGNLRVAVGEPREVVLRASVDF ECCCEEEEEEEEHHHHHHCCCCCCCCCEEEEEECCCCEEEEEEECCC >Mature Secondary Structure MNNTQRGWWCALPLAACACVPAIGADKTAEKGETLVVVGQAQADGVQSYQPLTSVTGTRT CCCCCCCEEEEHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCHHHCCCCCC ETSLLDVPQAIDVVPQQVITDQAVSSLDEALYNVSGITQANTLGGTQDAVMKRGFGDNRD CHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCCCCCC GSILRDGVRSVQARNFTPTTERVEVLKGPASMLYGMGEPGGMINMITKKPQLQQHTHVEG CHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHCCCCCCCCEEEEECCCCCHHHCCCCCC WGSSFKGGGGQLDVTGPLGTSGFAYRMIVDHDETDYWRNFGRNRQTVIAPSLMWFGESTT CCCCCCCCCCEEEECCCCCCCCEEEEEEEECCCCHHHHHCCCCCCEEEECEEEEECCCCE VRVAYEHMEYLVPFDRGTIIDSRTGKPVNTPRDRRFDESYNATRGDQDSVTLQVDQVLNE EEEEEEEEHEEEECCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEHHHHHHH SWKSSLTYAYSRNSYSDNQARALALDPETGVLSRQADSTAHAVSHANAVQLTLNGDVDWG HHHHCEEEEEECCCCCCCCCEEEEECCCCCCCCCCCCCHHHHHCCCCEEEEEECCCCCCC SINHQMLFGFDFEDNRTYRGDMIRGKKNSDFNIYNPVYGQMPTSNAVSAKDSDQRENLTS CCCCEEEEEEECCCCCEEECCEEECCCCCCCEEECCCCCCCCCCCCCCCCCCHHHHCHHH YGWFMQDSVQLTDKWLVMGGLRYDAFDVFAGKGRPFVTNTDSSDGKLVPRAGVVYKLTPY HCEEECCCEEECEEEEEECCCEECEEEEECCCCCCEEECCCCCCCEEEECCCEEEEECHH VSLYSSYTESFKPNSSIASQIGSLPPEQGKAWEMGSKVELPNGVTGTLALFDITKRNVMV HHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCCCCEEECCCCCEEEEEEEEECCCCEEH SELVNGETVTRTAGRVRSQGVELDVAGNITDSLSLIGSYAYTDARVVDDPDNKGKEMTNV HHHCCCCEEEHHHHHHHHCCEEEEECCCCHHHHHHHHHHHCCCCEEECCCCCCCHHHHHH ARHTASLFLTQDLGSPRLYSGDNLRMGAGARYVGRRPGDAANSFNLDNYTVADAFAAYIM HHHHHEEEEEECCCCCCEECCCCEEECCCCCCCCCCCCCCCCCCCCCCEEHHHHHEEEEE PVNGYRVKWQLNVKNLFDKTYYPSSGGNLRVAVGEPREVVLRASVDF ECCCEEEEEEEEHHHHHHCCCCCCCCCEEEEEECCCCEEEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8576065 [H]