| Definition | Serratia proteamaculans 568 chromosome, complete genome. |
|---|---|
| Accession | NC_009832 |
| Length | 5,448,853 |
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The map label for this gene is lptD [H]
Identifier: 157368972
GI number: 157368972
Start: 804228
End: 806591
Strand: Reverse
Name: lptD [H]
Synonym: Spro_0727
Alternate gene names: 157368972
Gene position: 806591-804228 (Counterclockwise)
Preceding gene: 157368974
Following gene: 157368971
Centisome position: 14.8
GC content: 55.29
Gene sequence:
>2364_bases ATGAAAAAAAGTTTCCCAACACTGCTGGCCACACTGATTTGGACGGCACTCTACAGCCAGCACGCTCTGGCTGACCTTGC TGAGCAATGCATGCTTGGCGTTCCTGTTTATGATAAACCGCTGGTCAGCGGCGATCCCAACAGCCTGCCCGTCACCATTC ACGCCGATGACTCCCGCGCGGATTATCCGAAAAGTGCGCTGTTCACCGGTAACGTGAATATTGAACAAGGCAACAGCACC CTGACCGCCAAACAGGTGGAACTGAACCAGACGCAAAATCCGGGGCAGACCGATCCGGTGCGCACCGTGACCGCTACCGG TGACGTGCACTACAGCGACAATCAGATCAAGCTGAAAGGCCCGAAAGCCTGGTCGAACCTGAACAACAAAGATACCGACG TCTATGAGGGTGACTACCAGATGGTAGGCCGTCAGGGGCGTGGCGATGCCGACAAGATGAAGATGCGCGGTGCCAACCGT TATACCATTTTGGAAAACGGCACCTTTACCTCCTGTCTGCCCGGCGACGACAGCTGGAGCGTGGTCGGTACCGAAGTGAT CCACGACCGCGAAGAGCAGGTGGCGGAAATCTGGAACGCCCGCTTTAAAATTGGCGGCGTGCCGGTGTTCTACAGCCCGT ACCTGCAATTGCCAGTCGGTGATAAACGTCGCTCCGGTTTCCTGATCCCGAACGCAAAATATGGCAGCAGCAATGGCTTT GAATTTATGCTGCCGTATTACTGGAACATTGCGCCGAACTTCGACGCCACCATCACACCGCACTACATGTCCCGACGCGG CCTGCAGTTGCAGAACGAATTCCGCTATCTGGTACAGCCGGGCCTGGGCCTGATGGAGTTCGACTGGTTGCCGAACGATA AGGAATACAGCAAGGACAACCCTGACGACAGTAAACGTTGGTTGTTCTACTGGAACCACAATGGGGTGATGGACCAGGTG TGGCGCTTCAACGTCGACTACACCAAGGTCAGCGATTCCAAATACTTTACCGATCTGGACTCCAAATACGGTTCCACCAC CGACGGCTATGCGACGCAGAAATTCAGCCTCGGCTACGCCATCGATAACTGGGACGCGACGTTAAGCTCCAAACAGTTCC AGATCTACGACGATACTGACCGCAGCCAATCCGACTCTTATAAAGTTCAGCCACAGCTGGACCTGAACTACTATAAAGAC GATCTCGGCCCGTTCGATTTCCGCATTTACGGCCAGGCGGCCAAGTTCATCAGCGTCAACCCATACAGCCCGGACGCAAC ACGTCTGCATATGGAACCGACGCTGAGCCTGCCGCTGACCAACGGCTGGGGCAGTCTGAACACCGAAGCCAAACTGCTGG CAACCCACTATCAGCAGGATATTCCAGACGGTTTTGCCGCCAACTACAAGAGCCGTACCGGTAACAACGCGCCAGGTCTT GAAGACTCGGTCAACCGCGTGTTGCCGCAGTTCAAGGTCGACGGCAAGATGGTATTCGACCGCCCAATGGATTGGTCCGA AGGCTATACCCAGACCCTGGAACCGCGCATGCAGTACCTGTATGTGCCGTATCGCGACCAGAGCAACATCTACACCTACG ACACCACGCTGCTGCAAACCGACTACTCCGGCCTGTTCCGTGACCGTACTTACAGCGGCCTGGATCGCATCGCTTCACAG AACCGTGTTTCAACCGGTTTGACCACGCGAATTTATGATGACGCGCTGATTGAACGTTTTAACGCTTCCGTGGGTCAAAT CTACTACTTCAGCCGTTCCCGTACCGGTGACCAAACCACGGGCTACGATAACAATGATGATACCGGCAGCCTGGCCTGGG CCGGTGACACCTATTGGAAGATTGACGATCGTTGGGGCCTGCGTGGCGGCCTGCAGTATGACACGCGCCTCAATAGCGTT TCATTGGGCAACGGCGTACTGGAATACCGTCAGGATTCTGAACGCGTCCTGCAGTTGAACTACCGTTACGCCACGCCGGA GTATATTGAAACGGCACTGAACACCAAGCAGGTTCCAGCCTATCAGGACGGTATTTCGCAGGTGGGCGTCACCGGCAGTT GGCCAATCGCCGATCGTTGGGCCGTCGTTGGGGCTTATTACTACGACACCCGTGCCAAACAGTCCGCCGATCAGTTGCTT GGTGTGAAGTACAACACCTGCTGCTGGGCAGTGACCTTGGGCTATGAGCGTAAGATCACCGACTGGAATGGCAGCAACAA TACCAGCGTTTATGACAACAAAGTTTCGTTCAACGTCGAACTGCGTGGCCTGAGCAGCGATCACAGTCTGGGCTCCGCGG AAATGTTGCGTTCCGGCATTCTGCCTTACCAGCGTGCATTTTGA
Upstream 100 bases:
>100_bases AAACGGCCGGATTTAACACTAGCGCAACGCAGATGAGTAATATAGTCTCTGACCGTTTGCCGGACATGACGCCTCTGATG ACGGAACACCAAAACCGCGT
Downstream 100 bases:
>100_bases TGCTTTGTAACACTTTGAAAACGAGAACTTTAACCCGCATTTGCGGATTACATAATGGGAAATGTATGAAGAACTGGAGA ACGCTTATTCTCGGATTGGT
Product: organic solvent tolerance protein
Products: NA
Alternate protein names: Organic solvent tolerance protein [H]
Number of amino acids: Translated: 787; Mature: 787
Protein sequence:
>787_residues MKKSFPTLLATLIWTALYSQHALADLAEQCMLGVPVYDKPLVSGDPNSLPVTIHADDSRADYPKSALFTGNVNIEQGNST LTAKQVELNQTQNPGQTDPVRTVTATGDVHYSDNQIKLKGPKAWSNLNNKDTDVYEGDYQMVGRQGRGDADKMKMRGANR YTILENGTFTSCLPGDDSWSVVGTEVIHDREEQVAEIWNARFKIGGVPVFYSPYLQLPVGDKRRSGFLIPNAKYGSSNGF EFMLPYYWNIAPNFDATITPHYMSRRGLQLQNEFRYLVQPGLGLMEFDWLPNDKEYSKDNPDDSKRWLFYWNHNGVMDQV WRFNVDYTKVSDSKYFTDLDSKYGSTTDGYATQKFSLGYAIDNWDATLSSKQFQIYDDTDRSQSDSYKVQPQLDLNYYKD DLGPFDFRIYGQAAKFISVNPYSPDATRLHMEPTLSLPLTNGWGSLNTEAKLLATHYQQDIPDGFAANYKSRTGNNAPGL EDSVNRVLPQFKVDGKMVFDRPMDWSEGYTQTLEPRMQYLYVPYRDQSNIYTYDTTLLQTDYSGLFRDRTYSGLDRIASQ NRVSTGLTTRIYDDALIERFNASVGQIYYFSRSRTGDQTTGYDNNDDTGSLAWAGDTYWKIDDRWGLRGGLQYDTRLNSV SLGNGVLEYRQDSERVLQLNYRYATPEYIETALNTKQVPAYQDGISQVGVTGSWPIADRWAVVGAYYYDTRAKQSADQLL GVKYNTCCWAVTLGYERKITDWNGSNNTSVYDNKVSFNVELRGLSSDHSLGSAEMLRSGILPYQRAF
Sequences:
>Translated_787_residues MKKSFPTLLATLIWTALYSQHALADLAEQCMLGVPVYDKPLVSGDPNSLPVTIHADDSRADYPKSALFTGNVNIEQGNST LTAKQVELNQTQNPGQTDPVRTVTATGDVHYSDNQIKLKGPKAWSNLNNKDTDVYEGDYQMVGRQGRGDADKMKMRGANR YTILENGTFTSCLPGDDSWSVVGTEVIHDREEQVAEIWNARFKIGGVPVFYSPYLQLPVGDKRRSGFLIPNAKYGSSNGF EFMLPYYWNIAPNFDATITPHYMSRRGLQLQNEFRYLVQPGLGLMEFDWLPNDKEYSKDNPDDSKRWLFYWNHNGVMDQV WRFNVDYTKVSDSKYFTDLDSKYGSTTDGYATQKFSLGYAIDNWDATLSSKQFQIYDDTDRSQSDSYKVQPQLDLNYYKD DLGPFDFRIYGQAAKFISVNPYSPDATRLHMEPTLSLPLTNGWGSLNTEAKLLATHYQQDIPDGFAANYKSRTGNNAPGL EDSVNRVLPQFKVDGKMVFDRPMDWSEGYTQTLEPRMQYLYVPYRDQSNIYTYDTTLLQTDYSGLFRDRTYSGLDRIASQ NRVSTGLTTRIYDDALIERFNASVGQIYYFSRSRTGDQTTGYDNNDDTGSLAWAGDTYWKIDDRWGLRGGLQYDTRLNSV SLGNGVLEYRQDSERVLQLNYRYATPEYIETALNTKQVPAYQDGISQVGVTGSWPIADRWAVVGAYYYDTRAKQSADQLL GVKYNTCCWAVTLGYERKITDWNGSNNTSVYDNKVSFNVELRGLSSDHSLGSAEMLRSGILPYQRAF >Mature_787_residues MKKSFPTLLATLIWTALYSQHALADLAEQCMLGVPVYDKPLVSGDPNSLPVTIHADDSRADYPKSALFTGNVNIEQGNST LTAKQVELNQTQNPGQTDPVRTVTATGDVHYSDNQIKLKGPKAWSNLNNKDTDVYEGDYQMVGRQGRGDADKMKMRGANR YTILENGTFTSCLPGDDSWSVVGTEVIHDREEQVAEIWNARFKIGGVPVFYSPYLQLPVGDKRRSGFLIPNAKYGSSNGF EFMLPYYWNIAPNFDATITPHYMSRRGLQLQNEFRYLVQPGLGLMEFDWLPNDKEYSKDNPDDSKRWLFYWNHNGVMDQV WRFNVDYTKVSDSKYFTDLDSKYGSTTDGYATQKFSLGYAIDNWDATLSSKQFQIYDDTDRSQSDSYKVQPQLDLNYYKD DLGPFDFRIYGQAAKFISVNPYSPDATRLHMEPTLSLPLTNGWGSLNTEAKLLATHYQQDIPDGFAANYKSRTGNNAPGL EDSVNRVLPQFKVDGKMVFDRPMDWSEGYTQTLEPRMQYLYVPYRDQSNIYTYDTTLLQTDYSGLFRDRTYSGLDRIASQ NRVSTGLTTRIYDDALIERFNASVGQIYYFSRSRTGDQTTGYDNNDDTGSLAWAGDTYWKIDDRWGLRGGLQYDTRLNSV SLGNGVLEYRQDSERVLQLNYRYATPEYIETALNTKQVPAYQDGISQVGVTGSWPIADRWAVVGAYYYDTRAKQSADQLL GVKYNTCCWAVTLGYERKITDWNGSNNTSVYDNKVSFNVELRGLSSDHSLGSAEMLRSGILPYQRAF
Specific function: Together with lptE, is involved in the assembly of LPS in the outer leaflet of the outer membrane. Determines N-hexane tolerance and is involved in outer membrane permeability. Essential for envelope biogenesis [H]
COG id: COG1452
COG function: function code M; Organic solvent tolerance protein OstA
Gene ontology:
Cell location: Cell outer membrane [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the lptD family [H]
Homologues:
Organism=Escherichia coli, GI1786239, Length=794, Percent_Identity=67.5062972292191, Blast_Score=1123, Evalue=0.0,
Paralogues:
None
Copy number: 60 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR020889 - InterPro: IPR005653 - InterPro: IPR007543 [H]
Pfam domain/function: PF03968 OstA; PF04453 OstA_C [H]
EC number: NA
Molecular weight: Translated: 89465; Mature: 89465
Theoretical pI: Translated: 4.94; Mature: 4.94
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKSFPTLLATLIWTALYSQHALADLAEQCMLGVPVYDKPLVSGDPNSLPVTIHADDSRA CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCCC DYPKSALFTGNVNIEQGNSTLTAKQVELNQTQNPGQTDPVRTVTATGDVHYSDNQIKLKG CCCCCEEEECCEEEECCCCEEEEEEEEECCCCCCCCCCCCEEEEECCCEEECCCEEEEEC PKAWSNLNNKDTDVYEGDYQMVGRQGRGDADKMKMRGANRYTILENGTFTSCLPGDDSWS CHHHCCCCCCCCCEECCCHHEECCCCCCCHHHHHHCCCCEEEEEECCCEEEECCCCCCCE VVGTEVIHDREEQVAEIWNARFKIGGVPVFYSPYLQLPVGDKRRSGFLIPNAKYGSSNGF EEEHHHHHCHHHHHHHHHCCEEEECCEEEEECCEEECCCCCCCCCCEEECCCCCCCCCCE EFMLPYYWNIAPNFDATITPHYMSRRGLQLQNEFRYLVQPGLGLMEFDWLPNDKEYSKDN EEEEEEEEEECCCCCCEECCHHHHCCCCCHHHHHHHHHCCCCCEEEECCCCCCCCCCCCC PDDSKRWLFYWNHNGVMDQVWRFNVDYTKVSDSKYFTDLDSKYGSTTDGYATQKFSLGYA CCCCCEEEEEECCCCHHHHHEEECCCEEEECCCCEEECHHHHCCCCCCCCEEEEEEEEEE IDNWDATLSSKQFQIYDDTDRSQSDSYKVQPQLDLNYYKDDLGPFDFRIYGQAAKFISVN EECCCCCCCCCEEEEEECCCCCCCCCEEECEEEECCCHHCCCCCEEEEEEECEEEEEEEC PYSPDATRLHMEPTLSLPLTNGWGSLNTEAKLLATHYQQDIPDGFAANYKSRTGNNAPGL CCCCCCEEEEECCEEEEEEECCCCCCCCCHHHHHHHHHHHCCCCHHCCCCCCCCCCCCCC EDSVNRVLPQFKVDGKMVFDRPMDWSEGYTQTLEPRMQYLYVPYRDQSNIYTYDTTLLQT HHHHHHHCCCEECCCEEEEECCCCCCCCCHHHCCCCEEEEEEEECCCCCEEEEEEEEEEE DYSGLFRDRTYSGLDRIASQNRVSTGLTTRIYDDALIERFNASVGQIYYFSRSRTGDQTT CCHHHHHCCCHHHHHHHHHCCCCCCCCEEEHHHHHHHHHHCCCCCEEEEEECCCCCCCCC GYDNNDDTGSLAWAGDTYWKIDDRWGLRGGLQYDTRLNSVSLGNGVLEYRQDSERVLQLN CCCCCCCCCEEEECCCEEEEECCCCCCCCCCEECCCCCEEECCCCHHHHCCCCCEEEEEE YRYATPEYIETALNTKQVPAYQDGISQVGVTGSWPIADRWAVVGAYYYDTRAKQSADQLL EEECCHHHHHHHCCCCCCCCHHHHHHHCCCCCCCCCCCCEEEEEEEEECCHHHHHHHHHH GVKYNTCCWAVTLGYERKITDWNGSNNTSVYDNKVSFNVELRGLSSDHSLGSAEMLRSGI CCEECCEEEEEEECCEEEEECCCCCCCCEEEECEEEEEEEEEECCCCCCCCHHHHHHHCC LPYQRAF CCHHHCC >Mature Secondary Structure MKKSFPTLLATLIWTALYSQHALADLAEQCMLGVPVYDKPLVSGDPNSLPVTIHADDSRA CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCCC DYPKSALFTGNVNIEQGNSTLTAKQVELNQTQNPGQTDPVRTVTATGDVHYSDNQIKLKG CCCCCEEEECCEEEECCCCEEEEEEEEECCCCCCCCCCCCEEEEECCCEEECCCEEEEEC PKAWSNLNNKDTDVYEGDYQMVGRQGRGDADKMKMRGANRYTILENGTFTSCLPGDDSWS CHHHCCCCCCCCCEECCCHHEECCCCCCCHHHHHHCCCCEEEEEECCCEEEECCCCCCCE VVGTEVIHDREEQVAEIWNARFKIGGVPVFYSPYLQLPVGDKRRSGFLIPNAKYGSSNGF EEEHHHHHCHHHHHHHHHCCEEEECCEEEEECCEEECCCCCCCCCCEEECCCCCCCCCCE EFMLPYYWNIAPNFDATITPHYMSRRGLQLQNEFRYLVQPGLGLMEFDWLPNDKEYSKDN EEEEEEEEEECCCCCCEECCHHHHCCCCCHHHHHHHHHCCCCCEEEECCCCCCCCCCCCC PDDSKRWLFYWNHNGVMDQVWRFNVDYTKVSDSKYFTDLDSKYGSTTDGYATQKFSLGYA CCCCCEEEEEECCCCHHHHHEEECCCEEEECCCCEEECHHHHCCCCCCCCEEEEEEEEEE IDNWDATLSSKQFQIYDDTDRSQSDSYKVQPQLDLNYYKDDLGPFDFRIYGQAAKFISVN EECCCCCCCCCEEEEEECCCCCCCCCEEECEEEECCCHHCCCCCEEEEEEECEEEEEEEC PYSPDATRLHMEPTLSLPLTNGWGSLNTEAKLLATHYQQDIPDGFAANYKSRTGNNAPGL CCCCCCEEEEECCEEEEEEECCCCCCCCCHHHHHHHHHHHCCCCHHCCCCCCCCCCCCCC EDSVNRVLPQFKVDGKMVFDRPMDWSEGYTQTLEPRMQYLYVPYRDQSNIYTYDTTLLQT HHHHHHHCCCEECCCEEEEECCCCCCCCCHHHCCCCEEEEEEEECCCCCEEEEEEEEEEE DYSGLFRDRTYSGLDRIASQNRVSTGLTTRIYDDALIERFNASVGQIYYFSRSRTGDQTT CCHHHHHCCCHHHHHHHHHCCCCCCCCEEEHHHHHHHHHHCCCCCEEEEEECCCCCCCCC GYDNNDDTGSLAWAGDTYWKIDDRWGLRGGLQYDTRLNSVSLGNGVLEYRQDSERVLQLN CCCCCCCCCEEEECCCEEEEECCCCCCCCCCEECCCCCEEECCCCHHHHCCCCCEEEEEE YRYATPEYIETALNTKQVPAYQDGISQVGVTGSWPIADRWAVVGAYYYDTRAKQSADQLL EEECCHHHHHHHCCCCCCCCHHHHHHHCCCCCCCCCCCCEEEEEEEEECCHHHHHHHHHH GVKYNTCCWAVTLGYERKITDWNGSNNTSVYDNKVSFNVELRGLSSDHSLGSAEMLRSGI CCEECCEEEEEEECCEEEEECCCCCCCCEEEECEEEEEEEEEECCCCCCCCHHHHHHHCC LPYQRAF CCHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA