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The map label for this gene is rfaS [H]

Identifier: 157158578

GI number: 157158578

Start: 2284294

End: 2285181

Strand: Reverse

Name: rfaS [H]

Synonym: EcE24377A_2321

Alternate gene names: 157158578

Gene position: 2285181-2284294 (Counterclockwise)

Preceding gene: 157158956

Following gene: 157157026

Centisome position: 45.89

GC content: 29.17

Gene sequence:

>888_bases
ATGATAGTTTTTATTGGCTGGACGGCAGATTATGACCGTATAATGATACAGCAATTAAGAGAACATTTCGAAATAAAAAA
CATTGCCTATCCTGAAGGGCGATTGTTTTTTAGATTAAACAAAATCACAAAATTTAATCTTGTTCGATTATTTTTAAAGT
TACATAGTTTGGCGTTTCCACCTGATGCAATTCTGATTTTTAAAGATTCAGATGGATACGGCTATCATAGACATTTAGAT
TTATTTAAGCAAAAAAAGATATTGATCGTAAGGAATATAATCACATCAGAATTAGCCTTGTTTTTTAAGGATAGTTTTGA
TGAAGTCCATTCCTTTGATAAAGCACAATGTGATAAATATGACTTTAAGTATATGCGGCAAATATTTCCTTTGTCTAATG
TTTATAAGAATGGTTCACTTGCAAATGATAGTTGTTATTTTGTCGGGCTTGATAAAAATAGGTTGTCAATAATCGATTCA
ATTGGTCAAGCTCTCAGTTATCATGGCATTAAACCATCTTTCTTTGTTATTAAGGATAAAACCTCTTACAAGCATTCAGG
TTTCTATAGTAATTGTGCTATAAGTTATAAGGAGAATATAAATAAAGTACAAGAAAATAAATATATTCTTGAGGTAAACA
CAGTTGGGCAAGTTGGATTAACATTGCGTTCTTTGGAATCTATTTTTTATTCACGAAAATTAATATCGAACAATATTGAC
TTGATGAATTGTGATTTTTATGATAAATCCCGGATATTCATTTTTAATAATCCAAACGATCTGTTCTCTTCAGATTTTGA
TGAGTTCATCCGTTTACCATATAAACCTGTAGAAAATGTTATTTTAGAAAAATACAAAGCATCTAATATCTTTAAAAAGC
TAACTTAG

Upstream 100 bases:

>100_bases
CTTATCATTATGCTGGGGTTTATGGATTAGCATTCGCTAGTAGTATTTATTCTTTGATAAATATGTCGGTTATGTTTTTA
ATTATCATGTTGAGGCTTAA

Downstream 100 bases:

>100_bases
TAGAAATTATATAAAATTAACTTGAACTATTATGCATGCAATCTTTGATAATATAAAGTTGTCGCAATTAATATTATTAC
ATTCTTGTCTGTTAAATCTA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 295; Mature: 295

Protein sequence:

>295_residues
MIVFIGWTADYDRIMIQQLREHFEIKNIAYPEGRLFFRLNKITKFNLVRLFLKLHSLAFPPDAILIFKDSDGYGYHRHLD
LFKQKKILIVRNIITSELALFFKDSFDEVHSFDKAQCDKYDFKYMRQIFPLSNVYKNGSLANDSCYFVGLDKNRLSIIDS
IGQALSYHGIKPSFFVIKDKTSYKHSGFYSNCAISYKENINKVQENKYILEVNTVGQVGLTLRSLESIFYSRKLISNNID
LMNCDFYDKSRIFIFNNPNDLFSSDFDEFIRLPYKPVENVILEKYKASNIFKKLT

Sequences:

>Translated_295_residues
MIVFIGWTADYDRIMIQQLREHFEIKNIAYPEGRLFFRLNKITKFNLVRLFLKLHSLAFPPDAILIFKDSDGYGYHRHLD
LFKQKKILIVRNIITSELALFFKDSFDEVHSFDKAQCDKYDFKYMRQIFPLSNVYKNGSLANDSCYFVGLDKNRLSIIDS
IGQALSYHGIKPSFFVIKDKTSYKHSGFYSNCAISYKENINKVQENKYILEVNTVGQVGLTLRSLESIFYSRKLISNNID
LMNCDFYDKSRIFIFNNPNDLFSSDFDEFIRLPYKPVENVILEKYKASNIFKKLT
>Mature_295_residues
MIVFIGWTADYDRIMIQQLREHFEIKNIAYPEGRLFFRLNKITKFNLVRLFLKLHSLAFPPDAILIFKDSDGYGYHRHLD
LFKQKKILIVRNIITSELALFFKDSFDEVHSFDKAQCDKYDFKYMRQIFPLSNVYKNGSLANDSCYFVGLDKNRLSIIDS
IGQALSYHGIKPSFFVIKDKTSYKHSGFYSNCAISYKENINKVQENKYILEVNTVGQVGLTLRSLESIFYSRKLISNNID
LMNCDFYDKSRIFIFNNPNDLFSSDFDEFIRLPYKPVENVILEKYKASNIFKKLT

Specific function: Lipopolysaccharide core biosynthesis. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1790059, Length=293, Percent_Identity=32.4232081911263, Blast_Score=123, Evalue=1e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 34734; Mature: 34734

Theoretical pI: Translated: 9.36; Mature: 9.36

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIVFIGWTADYDRIMIQQLREHFEIKNIAYPEGRLFFRLNKITKFNLVRLFLKLHSLAFP
CEEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCC
PDAILIFKDSDGYGYHRHLDLFKQKKILIVRNIITSELALFFKDSFDEVHSFDKAQCDKY
CCEEEEEECCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHCCCHHHCCHH
DFKYMRQIFPLSNVYKNGSLANDSCYFVGLDKNRLSIIDSIGQALSYHGIKPSFFVIKDK
HHHHHHHHCCHHHHHCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHCCCCCEEEEEECC
TSYKHSGFYSNCAISYKENINKVQENKYILEVNTVGQVGLTLRSLESIFYSRKLISNNID
CCCCCCCCCCCEEEEHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCC
LMNCDFYDKSRIFIFNNPNDLFSSDFDEFIRLPYKPVENVILEKYKASNIFKKLT
EEECCCCCCCEEEEEECCCHHHHCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MIVFIGWTADYDRIMIQQLREHFEIKNIAYPEGRLFFRLNKITKFNLVRLFLKLHSLAFP
CEEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCC
PDAILIFKDSDGYGYHRHLDLFKQKKILIVRNIITSELALFFKDSFDEVHSFDKAQCDKY
CCEEEEEECCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHCCCHHHCCHH
DFKYMRQIFPLSNVYKNGSLANDSCYFVGLDKNRLSIIDSIGQALSYHGIKPSFFVIKDK
HHHHHHHHCCHHHHHCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHCCCCCEEEEEECC
TSYKHSGFYSNCAISYKENINKVQENKYILEVNTVGQVGLTLRSLESIFYSRKLISNNID
CCCCCCCCCCCEEEEHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCC
LMNCDFYDKSRIFIFNNPNDLFSSDFDEFIRLPYKPVENVILEKYKASNIFKKLT
EEECCCCCCCEEEEEECCCHHHHCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1624461; 8041620; 9278503 [H]