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The map label for this gene is yraJ [H]

Identifier: 157162629

GI number: 157162629

Start: 3339740

End: 3342256

Strand: Direct

Name: yraJ [H]

Synonym: EcHS_A3336

Alternate gene names: 157162629

Gene position: 3339740-3342256 (Clockwise)

Preceding gene: 157162628

Following gene: 157162630

Centisome position: 71.92

GC content: 47.83

Gene sequence:

>2517_bases
ATGCCACAACGACACCACCAGGGACATAAACGCACACCGAAACAGTTGGCGCTCATTATCAAACGCTGTTTGCCGATGGT
GCTCACTGGCAGCGGCATGCTTTGCACTACCGCTAACGCCGAAGAGTATTATTTCGACCCCATTATGCTGGAAACCACAA
AAAGTGGTATGCAAACAACCGATCTGTCACGATTTTCAAAGAAATACGCACAACTACCAGGAACTTATCAGGTTGATATC
TGGCTGAATAAAAAGAAGGTTTCACAGAAAAAAATTACATTTACCGCCAATGCAGAGCAACTTCTGCAGCCACAGTTTAC
GGTAGAACAACTACGTGAGCTGGGTATTAAGGTGGATGAAATCCCGGCGCTGGCTGAAAAAGATGACGATAGCGTGATCA
ACTCGCTTGAACAAATCATTCCCGGTACAGCTGCTGAATTTGATTTCAATCATCAGCGACTTAATTTGAGCATTCCCCAA
ATTGCACTGTACCGTGATGCAAGAGGTTACGTCTCCCCTTCTCGTTGGGACGATGGTATACCAACGCTGTTTACCAACTA
CTCGTTTACAGGTTCTGATAACTGTTACCGCCAGGGCAATCGTAGCCAACGACAGTACCTGAATATGCAAAATGGTGCTA
ATTTTGGCCCCTGGCGATTACGCAACTATTCCACATGGACACGCAACGATCAGACATCAAGCTGGAATACCATCAGTAGT
TATTTACAACGTGATATCAAGGCATTGAAGTCTCAGTTGCTTCTGGGAGAAAGCGCCACCAGCGGCAGTATTTTTTCCAG
CTACACCTTTACTGGCGTTCAACTCGCTTCCGACGATAATATGCTGCCAAACAGCCAGCGCGGATTTGCCCCAACGGTAC
GCGGTATCGCAAACAGTAGTGCAATCGTGACTATCAGGCAAAATGGTTATGTGATCTATCAAAGCAACGTGCCAGCGGGT
GCCTTTGAAATTAACGATCTCTACCCCTCTTCCAACAGCGGCGATTTAGAAGTCACGATTGAAGAAAGTGACGGTACGCA
ACGTCGCTTTATCCAGCCTTATTCTTCATTACCCATGATGCAGCGACCTGGGCATCTAAAGTATAGCGCGACCGCTGGAC
GCTATCGCGCTGATGCAAACAGTGATAGCAAGGAACCCGAATTTGCTGAAGCCACGGCAATATATGGTTTGAATAATACT
TTTACGCTGTATGGCGGCCTGCTCGGTTCTGAAGATTATTATGCGCTGGGGATCGGTATCGGCGGCACACTTGGCGCACT
GGGCGCGTTGTCGATGGATATCAACAGAGCTGACACCCAATTCGATAACCAGCACTCTTTTCATGGCTATCAATGGCGTA
CGCAGTACATCAAAGATATCCCGGAAACCAACACCAATATCGCTGTCAGCTACTATCGCTATACCAACGATGGCTATTTT
AGTTTTGATGAAGCCAATACCCGTAATTGGAACTATAACAGTCGCCAAAAAAGTGAAATTCAATTCAACATCAGCCAGAC
AATATTTGATGGGGTAAGTCTGTATGCCTCCGGTTCGCAGCAAGACTATTGGGGCAATAACGATAAAAACAGGAATATCT
CTGTTGGGGTTTCCGGCCAGCAATGGGGAGTTGGTTACAGCCTGAATTATCAATACAGCCGCTACACTGATCAAAATAAT
GACCGCGCACTCTCTTTGAATCTCAGTATTCCGTTAGAACGCTGGTTACCGCGTAGCCGGGTTTCCTATCAGATGACCAG
CCAGAAAGATCGCCCAACCCAACATGAAATGCGTCTTGATGGCTCACTGCTGGATGATGGTCGCCTGAGCTATAGCCTGG
AACAAAGTCTGGATGACGATAACAACCATAACAGTAGCCTGAACGCCAGTTACCGTTCACCTTATGGAACCTTCAGTGCC
GGATACAGCTACGGTAATGACAGCAGCCAATACAATTACGGCGTTACCGGCGGCGTGGTTATCCATCCTCATGGCGTGAC
GCTCTCGCAATATCTGGGCAACGCTTTTGCGCTTATCGATGCTAATGGGGCTTCTGGCGTGAGGATACAAAACTATCCGG
GGATTGCTACCGATCCCTTTGGCTATGCAGTGGTTCCTTATCTCACGACTTACCAGGAAAACCGTCTCTCGGTAGATACT
ACGCAGCTGCCCGATAACGTCGATCTTGAGCAAACAACACAGTTTGTGGTGCCCAACAGAGGTGCAATGGTAGCGGCGCG
TTTCAACGCCAATATCGGTTATCGCGTACTTGTTACAGTCAGCGATCGCAACGGTAAACCGTTGCCCTTTGGCGCTCTTG
CCAGCAACGATGAGACGGGGCAACAAAGTATCGTCGATGAGGGCGGCATACTATATCTCTCTGGGATATCGAGTAAATCA
CAAAGCTGGACTGTACGCTGGGGAAATCAGGCAGATCAACAATGTCAGTTTGCTTTTAGTACACCGGATTCAGAACCCAC
AACCTCTGTATTACAAGGCACGGCGCAGTGCCATTAA

Upstream 100 bases:

>100_bases
AGAACGTGAAATGGGCTGCGATCAATGATTATGGCGGCAGTTCCGGGACAGAAACTCGTCCACTGCAATAACAAATATAA
AAAACACAGGTCATCAGGGA

Downstream 100 bases:

>100_bases
GGATAAAAAAATGAAAAGAGCGCCTCTTATAACAGGACTTTTGTTGATATCCACATCCTGCGCTTATGCCTCCTCAGGAG
GGTGTGGAGCCGATAGCACT

Product: fimbrial usher family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 838; Mature: 837

Protein sequence:

>838_residues
MPQRHHQGHKRTPKQLALIIKRCLPMVLTGSGMLCTTANAEEYYFDPIMLETTKSGMQTTDLSRFSKKYAQLPGTYQVDI
WLNKKKVSQKKITFTANAEQLLQPQFTVEQLRELGIKVDEIPALAEKDDDSVINSLEQIIPGTAAEFDFNHQRLNLSIPQ
IALYRDARGYVSPSRWDDGIPTLFTNYSFTGSDNCYRQGNRSQRQYLNMQNGANFGPWRLRNYSTWTRNDQTSSWNTISS
YLQRDIKALKSQLLLGESATSGSIFSSYTFTGVQLASDDNMLPNSQRGFAPTVRGIANSSAIVTIRQNGYVIYQSNVPAG
AFEINDLYPSSNSGDLEVTIEESDGTQRRFIQPYSSLPMMQRPGHLKYSATAGRYRADANSDSKEPEFAEATAIYGLNNT
FTLYGGLLGSEDYYALGIGIGGTLGALGALSMDINRADTQFDNQHSFHGYQWRTQYIKDIPETNTNIAVSYYRYTNDGYF
SFDEANTRNWNYNSRQKSEIQFNISQTIFDGVSLYASGSQQDYWGNNDKNRNISVGVSGQQWGVGYSLNYQYSRYTDQNN
DRALSLNLSIPLERWLPRSRVSYQMTSQKDRPTQHEMRLDGSLLDDGRLSYSLEQSLDDDNNHNSSLNASYRSPYGTFSA
GYSYGNDSSQYNYGVTGGVVIHPHGVTLSQYLGNAFALIDANGASGVRIQNYPGIATDPFGYAVVPYLTTYQENRLSVDT
TQLPDNVDLEQTTQFVVPNRGAMVAARFNANIGYRVLVTVSDRNGKPLPFGALASNDETGQQSIVDEGGILYLSGISSKS
QSWTVRWGNQADQQCQFAFSTPDSEPTTSVLQGTAQCH

Sequences:

>Translated_838_residues
MPQRHHQGHKRTPKQLALIIKRCLPMVLTGSGMLCTTANAEEYYFDPIMLETTKSGMQTTDLSRFSKKYAQLPGTYQVDI
WLNKKKVSQKKITFTANAEQLLQPQFTVEQLRELGIKVDEIPALAEKDDDSVINSLEQIIPGTAAEFDFNHQRLNLSIPQ
IALYRDARGYVSPSRWDDGIPTLFTNYSFTGSDNCYRQGNRSQRQYLNMQNGANFGPWRLRNYSTWTRNDQTSSWNTISS
YLQRDIKALKSQLLLGESATSGSIFSSYTFTGVQLASDDNMLPNSQRGFAPTVRGIANSSAIVTIRQNGYVIYQSNVPAG
AFEINDLYPSSNSGDLEVTIEESDGTQRRFIQPYSSLPMMQRPGHLKYSATAGRYRADANSDSKEPEFAEATAIYGLNNT
FTLYGGLLGSEDYYALGIGIGGTLGALGALSMDINRADTQFDNQHSFHGYQWRTQYIKDIPETNTNIAVSYYRYTNDGYF
SFDEANTRNWNYNSRQKSEIQFNISQTIFDGVSLYASGSQQDYWGNNDKNRNISVGVSGQQWGVGYSLNYQYSRYTDQNN
DRALSLNLSIPLERWLPRSRVSYQMTSQKDRPTQHEMRLDGSLLDDGRLSYSLEQSLDDDNNHNSSLNASYRSPYGTFSA
GYSYGNDSSQYNYGVTGGVVIHPHGVTLSQYLGNAFALIDANGASGVRIQNYPGIATDPFGYAVVPYLTTYQENRLSVDT
TQLPDNVDLEQTTQFVVPNRGAMVAARFNANIGYRVLVTVSDRNGKPLPFGALASNDETGQQSIVDEGGILYLSGISSKS
QSWTVRWGNQADQQCQFAFSTPDSEPTTSVLQGTAQCH
>Mature_837_residues
PQRHHQGHKRTPKQLALIIKRCLPMVLTGSGMLCTTANAEEYYFDPIMLETTKSGMQTTDLSRFSKKYAQLPGTYQVDIW
LNKKKVSQKKITFTANAEQLLQPQFTVEQLRELGIKVDEIPALAEKDDDSVINSLEQIIPGTAAEFDFNHQRLNLSIPQI
ALYRDARGYVSPSRWDDGIPTLFTNYSFTGSDNCYRQGNRSQRQYLNMQNGANFGPWRLRNYSTWTRNDQTSSWNTISSY
LQRDIKALKSQLLLGESATSGSIFSSYTFTGVQLASDDNMLPNSQRGFAPTVRGIANSSAIVTIRQNGYVIYQSNVPAGA
FEINDLYPSSNSGDLEVTIEESDGTQRRFIQPYSSLPMMQRPGHLKYSATAGRYRADANSDSKEPEFAEATAIYGLNNTF
TLYGGLLGSEDYYALGIGIGGTLGALGALSMDINRADTQFDNQHSFHGYQWRTQYIKDIPETNTNIAVSYYRYTNDGYFS
FDEANTRNWNYNSRQKSEIQFNISQTIFDGVSLYASGSQQDYWGNNDKNRNISVGVSGQQWGVGYSLNYQYSRYTDQNND
RALSLNLSIPLERWLPRSRVSYQMTSQKDRPTQHEMRLDGSLLDDGRLSYSLEQSLDDDNNHNSSLNASYRSPYGTFSAG
YSYGNDSSQYNYGVTGGVVIHPHGVTLSQYLGNAFALIDANGASGVRIQNYPGIATDPFGYAVVPYLTTYQENRLSVDTT
QLPDNVDLEQTTQFVVPNRGAMVAARFNANIGYRVLVTVSDRNGKPLPFGALASNDETGQQSIVDEGGILYLSGISSKSQ
SWTVRWGNQADQQCQFAFSTPDSEPTTSVLQGTAQCH

Specific function: Could be involved in the export and assembly of the putative yraH fimbrial subunit across the outer membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fimbrial export usher family [H]

Homologues:

Organism=Escherichia coli, GI1789533, Length=838, Percent_Identity=99.2840095465394, Blast_Score=1717, Evalue=0.0,
Organism=Escherichia coli, GI1787172, Length=870, Percent_Identity=38.735632183908, Blast_Score=567, Evalue=1e-163,
Organism=Escherichia coli, GI1790772, Length=882, Percent_Identity=37.5283446712018, Blast_Score=560, Evalue=1e-160,
Organism=Escherichia coli, GI1786744, Length=858, Percent_Identity=37.5291375291375, Blast_Score=552, Evalue=1e-158,
Organism=Escherichia coli, GI1786332, Length=857, Percent_Identity=31.9719953325554, Blast_Score=384, Evalue=1e-107,
Organism=Escherichia coli, GI1788427, Length=791, Percent_Identity=27.4336283185841, Blast_Score=300, Evalue=3e-82,
Organism=Escherichia coli, GI87081778, Length=820, Percent_Identity=29.5121951219512, Blast_Score=275, Evalue=7e-75,
Organism=Escherichia coli, GI1789610, Length=806, Percent_Identity=27.7915632754342, Blast_Score=187, Evalue=2e-48,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000015
- InterPro:   IPR018030 [H]

Pfam domain/function: PF00577 Usher [H]

EC number: NA

Molecular weight: Translated: 93616; Mature: 93485

Theoretical pI: Translated: 5.68; Mature: 5.68

Prosite motif: PS01151 FIMBRIAL_USHER

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPQRHHQGHKRTPKQLALIIKRCLPMVLTGSGMLCTTANAEEYYFDPIMLETTKSGMQTT
CCCCCCCCCCCCHHHHHHHHHHHHHHEECCCCEEEEECCCCCEEECCEEEEECCCCCCHH
DLSRFSKKYAQLPGTYQVDIWLNKKKVSQKKITFTANAEQLLQPQFTVEQLRELGIKVDE
HHHHHHHHHHHCCCCEEEEEEECCCCCCCEEEEEEECHHHHHCCCHHHHHHHHHCCEEEC
IPALAEKDDDSVINSLEQIIPGTAAEFDFNHQRLNLSIPQIALYRDARGYVSPSRWDDGI
CCCCCCCCCHHHHHHHHHHCCCCCEECCCCCEEEEECCCEEEEEECCCCCCCCCCCCCCC
PTLFTNYSFTGSDNCYRQGNRSQRQYLNMQNGANFGPWRLRNYSTWTRNDQTSSWNTISS
CEEEECEEECCCCCHHHCCCCCHHHHCCCCCCCCCCCEEECCCCCCCCCCCCCCHHHHHH
YLQRDIKALKSQLLLGESATSGSIFSSYTFTGVQLASDDNMLPNSQRGFAPTVRGIANSS
HHHHHHHHHHHHHEECCCCCCCCEEEEEEEEEEEEECCCCCCCCCCCCCCHHHHHCCCCC
AIVTIRQNGYVIYQSNVPAGAFEINDLYPSSNSGDLEVTIEESDGTQRRFIQPYSSLPMM
EEEEEECCCEEEEECCCCCCEEEEEECCCCCCCCCEEEEEECCCCCHHHHHCCHHCCCCC
QRPGHLKYSATAGRYRADANSDSKEPEFAEATAIYGLNNTFTLYGGLLGSEDYYALGIGI
CCCCCEEEECCCCCEECCCCCCCCCCCCHHEEEEEECCCEEEEEECEECCCCEEEEEECC
GGTLGALGALSMDINRADTQFDNQHSFHGYQWRTQYIKDIPETNTNIAVSYYRYTNDGYF
CCHHHHHHHEEECCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEEEEEECCCCEE
SFDEANTRNWNYNSRQKSEIQFNISQTIFDGVSLYASGSQQDYWGNNDKNRNISVGVSGQ
EECCCCCCCCCCCCCCCCEEEEEEHHHHHCCEEEEECCCCCCCCCCCCCCCEEEEEECCC
QWGVGYSLNYQYSRYTDQNNDRALSLNLSIPLERWLPRSRVSYQMTSQKDRPTQHEMRLD
CCCCEEEEEEEEHCCCCCCCCEEEEEEEECCHHHCCCCCCCEEEECCCCCCCCHHHEEEC
GSLLDDGRLSYSLEQSLDDDNNHNSSLNASYRSPYGTFSAGYSYGNDSSQYNYGVTGGVV
CCCCCCCCCEEEHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCEE
IHPHGVTLSQYLGNAFALIDANGASGVRIQNYPGIATDPFGYAVVPYLTTYQENRLSVDT
EECCCCCHHHHHCCEEEEEECCCCCCCEEECCCCCCCCCCCEEEEEEEEECCCCCEEEEC
TQLPDNVDLEQTTQFVVPNRGAMVAARFNANIGYRVLVTVSDRNGKPLPFGALASNDETG
CCCCCCCCHHHCCEEEECCCCEEEEEEECCCCCEEEEEEEECCCCCCCCCCCCCCCCCCC
QQSIVDEGGILYLSGISSKSQSWTVRWGNQADQQCQFAFSTPDSEPTTSVLQGTAQCH
CHHHHCCCCEEEEECCCCCCCEEEEEECCCCCCEEEEEECCCCCCCCHHHHHCCCCCC
>Mature Secondary Structure 
PQRHHQGHKRTPKQLALIIKRCLPMVLTGSGMLCTTANAEEYYFDPIMLETTKSGMQTT
CCCCCCCCCCCHHHHHHHHHHHHHHEECCCCEEEEECCCCCEEECCEEEEECCCCCCHH
DLSRFSKKYAQLPGTYQVDIWLNKKKVSQKKITFTANAEQLLQPQFTVEQLRELGIKVDE
HHHHHHHHHHHCCCCEEEEEEECCCCCCCEEEEEEECHHHHHCCCHHHHHHHHHCCEEEC
IPALAEKDDDSVINSLEQIIPGTAAEFDFNHQRLNLSIPQIALYRDARGYVSPSRWDDGI
CCCCCCCCCHHHHHHHHHHCCCCCEECCCCCEEEEECCCEEEEEECCCCCCCCCCCCCCC
PTLFTNYSFTGSDNCYRQGNRSQRQYLNMQNGANFGPWRLRNYSTWTRNDQTSSWNTISS
CEEEECEEECCCCCHHHCCCCCHHHHCCCCCCCCCCCEEECCCCCCCCCCCCCCHHHHHH
YLQRDIKALKSQLLLGESATSGSIFSSYTFTGVQLASDDNMLPNSQRGFAPTVRGIANSS
HHHHHHHHHHHHHEECCCCCCCCEEEEEEEEEEEEECCCCCCCCCCCCCCHHHHHCCCCC
AIVTIRQNGYVIYQSNVPAGAFEINDLYPSSNSGDLEVTIEESDGTQRRFIQPYSSLPMM
EEEEEECCCEEEEECCCCCCEEEEEECCCCCCCCCEEEEEECCCCCHHHHHCCHHCCCCC
QRPGHLKYSATAGRYRADANSDSKEPEFAEATAIYGLNNTFTLYGGLLGSEDYYALGIGI
CCCCCEEEECCCCCEECCCCCCCCCCCCHHEEEEEECCCEEEEEECEECCCCEEEEEECC
GGTLGALGALSMDINRADTQFDNQHSFHGYQWRTQYIKDIPETNTNIAVSYYRYTNDGYF
CCHHHHHHHEEECCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEEEEEECCCCEE
SFDEANTRNWNYNSRQKSEIQFNISQTIFDGVSLYASGSQQDYWGNNDKNRNISVGVSGQ
EECCCCCCCCCCCCCCCCEEEEEEHHHHHCCEEEEECCCCCCCCCCCCCCCEEEEEECCC
QWGVGYSLNYQYSRYTDQNNDRALSLNLSIPLERWLPRSRVSYQMTSQKDRPTQHEMRLD
CCCCEEEEEEEEHCCCCCCCCEEEEEEEECCHHHCCCCCCCEEEECCCCCCCCHHHEEEC
GSLLDDGRLSYSLEQSLDDDNNHNSSLNASYRSPYGTFSAGYSYGNDSSQYNYGVTGGVV
CCCCCCCCCEEEHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCEE
IHPHGVTLSQYLGNAFALIDANGASGVRIQNYPGIATDPFGYAVVPYLTTYQENRLSVDT
EECCCCCHHHHHCCEEEEEECCCCCCCEEECCCCCCCCCCCEEEEEEEEECCCCCEEEEC
TQLPDNVDLEQTTQFVVPNRGAMVAARFNANIGYRVLVTVSDRNGKPLPFGALASNDETG
CCCCCCCCHHHCCEEEECCCCEEEEEEECCCCCEEEEEEEECCCCCCCCCCCCCCCCCCC
QQSIVDEGGILYLSGISSKSQSWTVRWGNQADQQCQFAFSTPDSEPTTSVLQGTAQCH
CHHHHCCCCEEEEECCCCCCCEEEEEECCCCCCEEEEEECCCCCCCCHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]