Click here to switch to the map view.

The map label for this gene is sohA

Identifier: 157162612

GI number: 157162612

Start: 3325622

End: 3325957

Strand: Direct

Name: sohA

Synonym: EcHS_A3319

Alternate gene names: 157162612

Gene position: 3325622-3325957 (Clockwise)

Preceding gene: 157162611

Following gene: 157162613

Centisome position: 71.62

GC content: 47.62

Gene sequence:

>336_bases
ATGCCCGCTAATGCTCGCTCTCACGCTGTACTGACCACTGAATCAAAGGTCACGATACGCGGACAAACAACTATCCCCGC
GCCAGTGCGTGAGGCCTTAAAACTGAAGCCAGGCCAGGACAGCATTCATTACGAAATTCTGCCTGGTGGGCAAGTCTTTA
TGTGTCGACTGGGAGATGAACAGGAGGATCATACTATGAATGCATTTTTGCGTTTTCTGGATGCAGATATCCAGAACAAC
CCGCAAAAAACTCGTCCATTCAACATTCAACAAGGAAAGAAACTTGTCGCTGGCATGGACGTCAACATTGATGATGAGAT
TGGCGACGACGAATAA

Upstream 100 bases:

>100_bases
TATTGTTTAAAGCCCCCACGTCCATTAATAATGCATTTGCATTACCTTAGTTCAAGCTTATAATTTGAGCAGAAAACAGG
CTGTAAAAGGACAGTGAATC

Downstream 100 bases:

>100_bases
TGGATTTTCCACAAAGGGTTAATGGTTGGGCGCTATATGCTCATCCCTGTTTTCAGGAAACCTACGATGCTTTAGTTGCC
GAAGTCGAGGCATTAAAGGG

Product: putative regulator PrlF

Products: NA

Alternate protein names: Protein prlF

Number of amino acids: Translated: 111; Mature: 110

Protein sequence:

>111_residues
MPANARSHAVLTTESKVTIRGQTTIPAPVREALKLKPGQDSIHYEILPGGQVFMCRLGDEQEDHTMNAFLRFLDADIQNN
PQKTRPFNIQQGKKLVAGMDVNIDDEIGDDE

Sequences:

>Translated_111_residues
MPANARSHAVLTTESKVTIRGQTTIPAPVREALKLKPGQDSIHYEILPGGQVFMCRLGDEQEDHTMNAFLRFLDADIQNN
PQKTRPFNIQQGKKLVAGMDVNIDDEIGDDE
>Mature_110_residues
PANARSHAVLTTESKVTIRGQTTIPAPVREALKLKPGQDSIHYEILPGGQVFMCRLGDEQEDHTMNAFLRFLDADIQNNP
QKTRPFNIQQGKKLVAGMDVNIDDEIGDDE

Specific function: PrlF appears to be a bifunctional protein, with the ability to regulate its own expression as well as relieve the export block imposed by high-level synthesis of the lamB-lacZ hybrid protein

COG id: COG2002

COG function: function code K; Regulators of stationary/sporulation gene expression

Gene ontology:

Cell location: Cytoplasm (Probable)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1789517, Length=111, Percent_Identity=100, Blast_Score=231, Evalue=6e-63,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): SOHA_ECOLI (P15373)

Other databases:

- EMBL:   M30178
- EMBL:   M32358
- EMBL:   U18997
- EMBL:   U00096
- EMBL:   AP009048
- PIR:   A35137
- RefSeq:   AP_003675.1
- RefSeq:   NP_417598.1
- ProteinModelPortal:   P15373
- STRING:   P15373
- EnsemblBacteria:   EBESCT00000002590
- EnsemblBacteria:   EBESCT00000014998
- GeneID:   947639
- GenomeReviews:   AP009048_GR
- GenomeReviews:   U00096_GR
- KEGG:   ecj:JW3098
- KEGG:   eco:b3129
- EchoBASE:   EB0948
- EcoGene:   EG10955
- eggNOG:   COG2002
- GeneTree:   EBGT00050000011426
- HOGENOM:   HBG442235
- OMA:   RSQTTIP
- ProtClustDB:   PRK09974
- BioCyc:   EcoCyc:EG10955-MONOMER
- BioCyc:   MetaCyc:EG10955-MONOMER
- Genevestigator:   P15373
- GO:   GO:0005737

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 12359; Mature: 12228

Theoretical pI: Translated: 4.86; Mature: 4.86

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPANARSHAVLTTESKVTIRGQTTIPAPVREALKLKPGQDSIHYEILPGGQVFMCRLGDE
CCCCCCCCEEEECCCEEEEECCCCCCHHHHHHHCCCCCCCCEEEEEECCCEEEEEECCCC
QEDHTMNAFLRFLDADIQNNPQKTRPFNIQQGKKLVAGMDVNIDDEIGDDE
CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCC
>Mature Secondary Structure 
PANARSHAVLTTESKVTIRGQTTIPAPVREALKLKPGQDSIHYEILPGGQVFMCRLGDE
CCCCCCCEEEECCCEEEEECCCCCCHHHHHHHCCCCCCCCEEEEEECCCEEEEEECCCC
QEDHTMNAFLRFLDADIQNNPQKTRPFNIQQGKKLVAGMDVNIDDEIGDDE
CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2407727; 2152898; 9278503