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The map label for this gene is gspC1 [H]

Identifier: 157162439

GI number: 157162439

Start: 3149011

End: 3149970

Strand: Reverse

Name: gspC1 [H]

Synonym: EcHS_A3139

Alternate gene names: 157162439

Gene position: 3149970-3149011 (Counterclockwise)

Preceding gene: 157162440

Following gene: 157162438

Centisome position: 67.84

GC content: 50.94

Gene sequence:

>960_bases
TTGGCGCGGGTTGTTTTTCGTGACGCACGAATTTATCTCATTCAATGGCTGACAAAAATTCGTCACACTCTTAACCAGAG
ACAATCTCTTAATACAGACAAAGAGCATCTGCGCAAAATTGCACGCGGGATGTTCTGGCTGATGCTGCTTATTATTTCTG
CAAAAATGGCGTATTCACTCTGGCGCTATTTCTCCTTTTCTGCGGAATATACGGCTGTTTCCCCATCGGCGAATAAACCG
CCCCGTGCGGATGCAAAAACGTTCGATAAAAATGACGTGCAATTAATCAGCCAGCAAAACTGGTTTGGCAAATATCAGCC
CGTCGCCACGCCGGTAAAACAACCCGAACCTGTGCCTGTGGCAGAAACGCGTCTTAATGTGGTGTTGCGTGGGATCGCCT
TTGGTGCCAGACCCGGCGCGGTTATTGAAGAAGGTGGCAAACAGCAGGTCTATTTGCAGGGGGAACGGCTTGGTTCTCAC
AACGCGGTGATTGAGGAAATCAACCGCGACCATGTGATGCTGCGCTATCAGGGAAAAATAGAGCGCCTGAGCCTGGCAGA
AGAGGGGCATTCCACCGTAGCCGTGACCAACAAAAAAGCCGTCAGTGACGAAGCAAAGCAAGCTGTTGCTGAGCCTGCTG
CCAGTGCGCCAGTTGAGATCCCGACTGCCGTGCGTCAGGCACTGACGAAAGATCCGCAGAAAATTTTTAACTATATCCAG
CTTACGCCTGTGCGTAAGGAGGGGATTGTCGGTTATGCAGTGAAGCCGGGGGCAGATCGTTCTCTGTTCGATGCCAGCGG
TTTCAAGGAAGGCGATATCGCCATTGCGCTAAATCAGCAGGATTTCACTGATCCACGAGCAATGATTGCTCTGATGCGGC
AGTTACCTTCAATGGATTCCATTCAACTTACGGTTTTACGCAAGGGTGCGCGCCACGACATTTCCATCGCGCTGCGCTAA

Upstream 100 bases:

>100_bases
GCATAACGATTAATGATACACGTACAGGTAACCAGTATCAGCGGAAACTGGATCGTACCACCTGTGGAATAGTCAAAGCA
TAACGTCGGGTAGATATAAA

Downstream 100 bases:

>100_bases
CCGCATTTAATCCAGGAGAATCATTCATCGTGTTTTGGCGTGATATTACGTTGTCGGTCTGGCGTAAGAAGACAACTGGC
CTCAAAACAAAAAAGCGTTT

Product: putative type II secretion protein GspC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 319; Mature: 318

Protein sequence:

>319_residues
MARVVFRDARIYLIQWLTKIRHTLNQRQSLNTDKEHLRKIARGMFWLMLLIISAKMAYSLWRYFSFSAEYTAVSPSANKP
PRADAKTFDKNDVQLISQQNWFGKYQPVATPVKQPEPVPVAETRLNVVLRGIAFGARPGAVIEEGGKQQVYLQGERLGSH
NAVIEEINRDHVMLRYQGKIERLSLAEEGHSTVAVTNKKAVSDEAKQAVAEPAASAPVEIPTAVRQALTKDPQKIFNYIQ
LTPVRKEGIVGYAVKPGADRSLFDASGFKEGDIAIALNQQDFTDPRAMIALMRQLPSMDSIQLTVLRKGARHDISIALR

Sequences:

>Translated_319_residues
MARVVFRDARIYLIQWLTKIRHTLNQRQSLNTDKEHLRKIARGMFWLMLLIISAKMAYSLWRYFSFSAEYTAVSPSANKP
PRADAKTFDKNDVQLISQQNWFGKYQPVATPVKQPEPVPVAETRLNVVLRGIAFGARPGAVIEEGGKQQVYLQGERLGSH
NAVIEEINRDHVMLRYQGKIERLSLAEEGHSTVAVTNKKAVSDEAKQAVAEPAASAPVEIPTAVRQALTKDPQKIFNYIQ
LTPVRKEGIVGYAVKPGADRSLFDASGFKEGDIAIALNQQDFTDPRAMIALMRQLPSMDSIQLTVLRKGARHDISIALR
>Mature_318_residues
ARVVFRDARIYLIQWLTKIRHTLNQRQSLNTDKEHLRKIARGMFWLMLLIISAKMAYSLWRYFSFSAEYTAVSPSANKPP
RADAKTFDKNDVQLISQQNWFGKYQPVATPVKQPEPVPVAETRLNVVLRGIAFGARPGAVIEEGGKQQVYLQGERLGSHN
AVIEEINRDHVMLRYQGKIERLSLAEEGHSTVAVTNKKAVSDEAKQAVAEPAASAPVEIPTAVRQALTKDPQKIFNYIQL
TPVRKEGIVGYAVKPGADRSLFDASGFKEGDIAIALNQQDFTDPRAMIALMRQLPSMDSIQLTVLRKGARHDISIALR

Specific function: Involved in a general secretion pathway (GSP) for the export of proteins [H]

COG id: COG3031

COG function: function code U; Type II secretory pathway, component PulC

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GSP C family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001478
- InterPro:   IPR001639 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 35748; Mature: 35616

Theoretical pI: Translated: 10.34; Mature: 10.34

Prosite motif: PS01141 T2SP_C

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARVVFRDARIYLIQWLTKIRHTLNQRQSLNTDKEHLRKIARGMFWLMLLIISAKMAYSL
CCCEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
WRYFSFSAEYTAVSPSANKPPRADAKTFDKNDVQLISQQNWFGKYQPVATPVKQPEPVPV
HHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCHHEEECCCCCCCCCCCCCCCCCCCCCCH
AETRLNVVLRGIAFGARPGAVIEEGGKQQVYLQGERLGSHNAVIEEINRDHVMLRYQGKI
HHHHHHHHHHHHHCCCCCCHHHHCCCCEEEEEECCCCCCCHHHHHHCCCCEEEEEECCCC
ERLSLAEEGHSTVAVTNKKAVSDEAKQAVAEPAASAPVEIPTAVRQALTKDPQKIFNYIQ
HHHHHHHCCCCEEEEECCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCHHHHHHHHE
LTPVRKEGIVGYAVKPGADRSLFDASGFKEGDIAIALNQQDFTDPRAMIALMRQLPSMDS
ECEEHHCCEEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCC
IQLTVLRKGARHDISIALR
EEEEEECCCCCCCEEEEEC
>Mature Secondary Structure 
ARVVFRDARIYLIQWLTKIRHTLNQRQSLNTDKEHLRKIARGMFWLMLLIISAKMAYSL
CCEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
WRYFSFSAEYTAVSPSANKPPRADAKTFDKNDVQLISQQNWFGKYQPVATPVKQPEPVPV
HHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCHHEEECCCCCCCCCCCCCCCCCCCCCCH
AETRLNVVLRGIAFGARPGAVIEEGGKQQVYLQGERLGSHNAVIEEINRDHVMLRYQGKI
HHHHHHHHHHHHHCCCCCCHHHHCCCCEEEEEECCCCCCCHHHHHHCCCCEEEEEECCCC
ERLSLAEEGHSTVAVTNKKAVSDEAKQAVAEPAASAPVEIPTAVRQALTKDPQKIFNYIQ
HHHHHHHCCCCEEEEECCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCHHHHHHHHE
LTPVRKEGIVGYAVKPGADRSLFDASGFKEGDIAIALNQQDFTDPRAMIALMRQLPSMDS
ECEEHHCCEEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCC
IQLTVLRKGARHDISIALR
EEEEEECCCCCCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]