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The map label for this gene is yphF [H]

Identifier: 157162023

GI number: 157162023

Start: 2715941

End: 2716885

Strand: Reverse

Name: yphF [H]

Synonym: EcHS_A2700

Alternate gene names: 157162023

Gene position: 2716885-2715941 (Counterclockwise)

Preceding gene: 157162024

Following gene: 157162022

Centisome position: 58.51

GC content: 46.67

Gene sequence:

>945_bases
ATGGCTACGCTATTAGGTAGCGCACTATTTGCCAGGGCTGCGGATAAAGAAATGACCATTGGTGCAATATACCTTGATAC
CCAGGGATATTACGCTGGAGTGCGTCAGGGCGTTCAGGATGCGGCAAAAGATTCTTCAGTACAGGTACAGTTAATTGAAA
CTAACGCCCAGGGTGATATTTCGAAAGAATGTACCTTTGTTGATACCCTCGTGGCGCGTAATGTCGATGCCATTATTTTA
TCGGCAGTGTCTGAAAATGGCAGTAGCCGTACCGTTCGTCGCGCCAGTGAAGCGGGTATTCCGGTGATTTGCTACAACAC
CTGTATTAATCAAAAGGGTGTCGATAAATATGTCTCGGCGTATCTGGTCGGCGATCCACTGGAATTTGGTAAAAAACTGG
GTAACGCTGCCGCCGATTATTTTATTGCCAATAAAATTGACCAGCCGAAAATTGCCGTCATCAATTGCGAAGCCTTTGAA
GTTTGTGTGCAACGACGTAAAGGGTTTGAAGAAGTATTAAAAGCCCGCGTTCCCGGCGCGCAAATTGTCGCTAATCAGGA
AGGGACTGTTTTAGATAAAGCGATTTCCGTTGGTGAAAAACTGATTATCTCCACGCCGGATCTCAACGCCATTATGGGGG
AATCGGGCGGTGCGACACTCGGCGCGGTAAAAGCGGTACGTAATCAAAATCAGGCCGGAAAAATTGCTGTTTTCGGTTCG
GATATGACAACCGAAATTGCTCAGGAGCTGGAAAACAATCAGGTGCTGAAAGCGGTAGTGGATATTTCCGGTAAGAAAAT
GGGCAATGCTGTTTTCGCGCAAACATTGAAGGTTATCAATAAACAAGCCGACGGTGAAAAAGTGATTCAGGTGCCTATCG
ATCTCTATACCAAAACGGAAGACGGTAAACAGTGGCTGGCAACGCACGTTGATGGTCTGCCCTAA

Upstream 100 bases:

>100_bases
CAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACC
CAACCCGTAATCTATTATTA

Downstream 100 bases:

>100_bases
TCGCTGATTCGCAGAGGTCCCTATGTTCACGGCAACAGAGGCAGTCCCGGTAGCAAAAGTGGTGGCAGGAAATAAGCGTT
ATCCCGGCGTCGTTGCGTTG

Product: putative sugar ABC transporter, periplasmic sugar-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 314; Mature: 313

Protein sequence:

>314_residues
MATLLGSALFARAADKEMTIGAIYLDTQGYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKECTFVDTLVARNVDAIIL
SAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCEAFE
VCVQRRKGFEEVLKARVPGAQIVANQEGTVLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGS
DMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQVPIDLYTKTEDGKQWLATHVDGLP

Sequences:

>Translated_314_residues
MATLLGSALFARAADKEMTIGAIYLDTQGYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKECTFVDTLVARNVDAIIL
SAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCEAFE
VCVQRRKGFEEVLKARVPGAQIVANQEGTVLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGS
DMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQVPIDLYTKTEDGKQWLATHVDGLP
>Mature_313_residues
ATLLGSALFARAADKEMTIGAIYLDTQGYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKECTFVDTLVARNVDAIILS
AVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCEAFEV
CVQRRKGFEEVLKARVPGAQIVANQEGTVLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSD
MTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQVPIDLYTKTEDGKQWLATHVDGLP

Specific function: Probably part of the binding-protein-dependent transport system yphDEF [H]

COG id: COG1879

COG function: function code G; ABC-type sugar transport system, periplasmic component

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 2 family [H]

Homologues:

Organism=Escherichia coli, GI1788898, Length=314, Percent_Identity=99.0445859872611, Blast_Score=631, Evalue=0.0,
Organism=Escherichia coli, GI1788473, Length=262, Percent_Identity=25.9541984732824, Blast_Score=68, Evalue=8e-13,

Paralogues:

None

Copy number: 20 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001761 [H]

Pfam domain/function: PF00532 Peripla_BP_1 [H]

EC number: NA

Molecular weight: Translated: 33488; Mature: 33356

Theoretical pI: Translated: 5.06; Mature: 5.06

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATLLGSALFARAADKEMTIGAIYLDTQGYYAGVRQGVQDAAKDSSVQVQLIETNAQGDI
CCHHHHHHHHHHHCCCCEEEEEEEEECCCHHHHHHHHHHHHCCCCCEEEEEEEECCCCCC
SKECTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSA
CCCHHHHHHHHHCCHHHEEEEHHHCCCCCHHHHHHHHCCCCEEEEECCCCCCCHHHHHHH
YLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCEAFEVCVQRRKGFEEVLKARVPGA
HHCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECHHHHHHHHHHCCHHHHHHHCCCCC
QIVANQEGTVLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGS
EEEECCCCCHHHHHHHCCCEEEEECCCCHHEECCCCCCHHHHHHHHHCCCCCCEEEEECC
DMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQVPIDLYTKTE
CHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEEECCC
DGKQWLATHVDGLP
CHHHHHHHHCCCCC
>Mature Secondary Structure 
ATLLGSALFARAADKEMTIGAIYLDTQGYYAGVRQGVQDAAKDSSVQVQLIETNAQGDI
CHHHHHHHHHHHCCCCEEEEEEEEECCCHHHHHHHHHHHHCCCCCEEEEEEEECCCCCC
SKECTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSA
CCCHHHHHHHHHCCHHHEEEEHHHCCCCCHHHHHHHHCCCCEEEEECCCCCCCHHHHHHH
YLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCEAFEVCVQRRKGFEEVLKARVPGA
HHCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECHHHHHHHHHHCCHHHHHHHCCCCC
QIVANQEGTVLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGS
EEEECCCCCHHHHHHHCCCEEEEECCCCHHEECCCCCCHHHHHHHHHCCCCCCEEEEECC
DMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQVPIDLYTKTE
CHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEEECCC
DGKQWLATHVDGLP
CHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 9298646 [H]