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The map label for this gene is ydeT [H]

Identifier: 157160980

GI number: 157160980

Start: 1605676

End: 1606824

Strand: Reverse

Name: ydeT [H]

Synonym: EcHS_A1589

Alternate gene names: 157160980

Gene position: 1606824-1605676 (Counterclockwise)

Preceding gene: 157160981

Following gene: 157160979

Centisome position: 34.6

GC content: 44.56

Gene sequence:

>1149_bases
ATGAGTGGTTACACCGTCAAGCCTCCTACCGGAGACACCAATGAGCAGACACAATTTATTGATTATTTTAATCTGTTCTA
CAGTAAGCGTGGTCAGGAACAAATAAGCATCTCTCAGCAGCTTGGAAATTACGGTACGACATTTTTCAGTGCCAGTCGCC
AAAGTTACTGGAACACGTCACGCAGCGACCAGCAAATATCATTTGGATTAAATGTGCCGTTTGGTGATATTACGACTTCG
CTGAATTACAGCTATTCCAATAATATATGGCAAAACGATCGGGATCATTTACTCGCTTTTACGCTTAATGTTCCCTTCAG
TCATTGGATGCGTACAGACAGTCAGTCGGCATTTCGTAATTCAAACGCCAGTTACAGTATGTCAAACGATTTGAAAGGCG
GCATGACCAATCTATCGGGGGTTTATGGCACTCTGCTGCCGGATAATAACCTGAATTATAGCGTTCAGGTCGGTAACACC
CACGGAGGTAATACATCGTCTGGCACCAGTGGTTACAGTTCTCTTAATTATCGTGGAGCTTATGGTAATACTAATGTCGG
TTACAGTCGGAGTGGTGACAGCAGCCAGATTTATTACGGAATGAGTGGTGGGATTATTGCTCATGCTGATGGCATCACCT
TTGGACAGCCGCTGGGCGACACAATGGTTCTGGTTAAGGCTCCTGGTGCTGATAATGTCAAAATAGAGAACCAGACCGGA
ATTCATACCGACTGGCGTGGCTATGCCATATTACCATTTGCGACAGAATATAGAGAAAACCGTGTTGCTCTTAACGCGAA
TTCCCTTGCAGATAATGTTGAACTGGATGAAACCGTGGTCACTGTCATCCCAACTCACGGTGCTATTGCCAGAGCAACAT
TTAATGCACAAATCGGCGGGAAAGTATTAATGACGTTGAAGTACGGTAATAAGAGCGTTCCATTCGGTGCAATTGTCACA
CACGGAGAGAATAAAAATGGCAGCATTGTCGCGGAAAATGGTCAGGTTTATCTGACTGGACTTCCACAGTCAGGGCAATT
ACAGGTTTCATGGGGCAAAGATAAAAACTCAAACTGTATTGTCGAGTACAAGCTTCCTGAAGTTTCTCCTGGTACCTTAC
TGAACCAGCAGACAGCAATCTGTCGCTAA

Upstream 100 bases:

>100_bases
AGTGCAGCAATAAACTTGTTGTGGAACCAATATCCAGGTCGCAGGATATCGCTATTCTACGCAAGGTTTTTATAACTTAT
CCGACAGTGCCTACAGTCGA

Downstream 100 bases:

>100_bases
GGAACAATAGATTATGAAATACAATAACATTATTTTCCTCGGTTTATGTCTGGGGTTAACCACCTATTCTGCTTTATCCG
CAGATAGCGTTATTAAAATT

Product: fimbrial usher family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 382; Mature: 381

Protein sequence:

>382_residues
MSGYTVKPPTGDTNEQTQFIDYFNLFYSKRGQEQISISQQLGNYGTTFFSASRQSYWNTSRSDQQISFGLNVPFGDITTS
LNYSYSNNIWQNDRDHLLAFTLNVPFSHWMRTDSQSAFRNSNASYSMSNDLKGGMTNLSGVYGTLLPDNNLNYSVQVGNT
HGGNTSSGTSGYSSLNYRGAYGNTNVGYSRSGDSSQIYYGMSGGIIAHADGITFGQPLGDTMVLVKAPGADNVKIENQTG
IHTDWRGYAILPFATEYRENRVALNANSLADNVELDETVVTVIPTHGAIARATFNAQIGGKVLMTLKYGNKSVPFGAIVT
HGENKNGSIVAENGQVYLTGLPQSGQLQVSWGKDKNSNCIVEYKLPEVSPGTLLNQQTAICR

Sequences:

>Translated_382_residues
MSGYTVKPPTGDTNEQTQFIDYFNLFYSKRGQEQISISQQLGNYGTTFFSASRQSYWNTSRSDQQISFGLNVPFGDITTS
LNYSYSNNIWQNDRDHLLAFTLNVPFSHWMRTDSQSAFRNSNASYSMSNDLKGGMTNLSGVYGTLLPDNNLNYSVQVGNT
HGGNTSSGTSGYSSLNYRGAYGNTNVGYSRSGDSSQIYYGMSGGIIAHADGITFGQPLGDTMVLVKAPGADNVKIENQTG
IHTDWRGYAILPFATEYRENRVALNANSLADNVELDETVVTVIPTHGAIARATFNAQIGGKVLMTLKYGNKSVPFGAIVT
HGENKNGSIVAENGQVYLTGLPQSGQLQVSWGKDKNSNCIVEYKLPEVSPGTLLNQQTAICR
>Mature_381_residues
SGYTVKPPTGDTNEQTQFIDYFNLFYSKRGQEQISISQQLGNYGTTFFSASRQSYWNTSRSDQQISFGLNVPFGDITTSL
NYSYSNNIWQNDRDHLLAFTLNVPFSHWMRTDSQSAFRNSNASYSMSNDLKGGMTNLSGVYGTLLPDNNLNYSVQVGNTH
GGNTSSGTSGYSSLNYRGAYGNTNVGYSRSGDSSQIYYGMSGGIIAHADGITFGQPLGDTMVLVKAPGADNVKIENQTGI
HTDWRGYAILPFATEYRENRVALNANSLADNVELDETVVTVIPTHGAIARATFNAQIGGKVLMTLKYGNKSVPFGAIVTH
GENKNGSIVAENGQVYLTGLPQSGQLQVSWGKDKNSNCIVEYKLPEVSPGTLLNQQTAICR

Specific function: Unknown

COG id: COG3188

COG function: function code NU; P pilus assembly protein, porin PapC

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1790772, Length=382, Percent_Identity=56.8062827225131, Blast_Score=473, Evalue=1e-134,
Organism=Escherichia coli, GI1787172, Length=388, Percent_Identity=40.7216494845361, Blast_Score=301, Evalue=4e-83,
Organism=Escherichia coli, GI1786744, Length=373, Percent_Identity=38.3378016085791, Blast_Score=279, Evalue=2e-76,
Organism=Escherichia coli, GI1789533, Length=355, Percent_Identity=34.9295774647887, Blast_Score=204, Evalue=1e-53,
Organism=Escherichia coli, GI1786332, Length=355, Percent_Identity=27.3239436619718, Blast_Score=108, Evalue=6e-25,
Organism=Escherichia coli, GI1788427, Length=356, Percent_Identity=24.1573033707865, Blast_Score=89, Evalue=6e-19,
Organism=Escherichia coli, GI1789610, Length=310, Percent_Identity=25.1612903225806, Blast_Score=77, Evalue=2e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000015 [H]

Pfam domain/function: PF00577 Usher [H]

EC number: NA

Molecular weight: Translated: 41616; Mature: 41485

Theoretical pI: Translated: 6.63; Mature: 6.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGYTVKPPTGDTNEQTQFIDYFNLFYSKRGQEQISISQQLGNYGTTFFSASRQSYWNTS
CCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCEEEECCCHHHCCCC
RSDQQISFGLNVPFGDITTSLNYSYSNNIWQNDRDHLLAFTLNVPFSHWMRTDSQSAFRN
CCCCEEEEEECCCCCCEEEEEECCCCCCCCCCCCCEEEEEEEECCHHHHHCCCCHHHHHC
SNASYSMSNDLKGGMTNLSGVYGTLLPDNNLNYSVQVGNTHGGNTSSGTSGYSSLNYRGA
CCCCEEECCCCCCCCCCCCCEEEEECCCCCCEEEEEECCCCCCCCCCCCCCCCCCEEECC
YGNTNVGYSRSGDSSQIYYGMSGGIIAHADGITFGQPLGDTMVLVKAPGADNVKIENQTG
CCCCCCCCCCCCCCCEEEEECCCCEEEEECCCCCCCCCCCEEEEEECCCCCCEEECCCCC
IHTDWRGYAILPFATEYRENRVALNANSLADNVELDETVVTVIPTHGAIARATFNAQIGG
CCCCCCCEEEEEEHHCCCCCEEEEECCCCCCCCEECCEEEEEEECCCEEEEEEECCCCCC
KVLMTLKYGNKSVPFGAIVTHGENKNGSIVAENGQVYLTGLPQSGQLQVSWGKDKNSNCI
EEEEEEEECCCCCCEEEEEECCCCCCCCEEEECCEEEEEECCCCCEEEEEECCCCCCCEE
VEYKLPEVSPGTLLNQQTAICR
EEEECCCCCCCCEECCCHHCCC
>Mature Secondary Structure 
SGYTVKPPTGDTNEQTQFIDYFNLFYSKRGQEQISISQQLGNYGTTFFSASRQSYWNTS
CCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCEEEECCCHHHCCCC
RSDQQISFGLNVPFGDITTSLNYSYSNNIWQNDRDHLLAFTLNVPFSHWMRTDSQSAFRN
CCCCEEEEEECCCCCCEEEEEECCCCCCCCCCCCCEEEEEEEECCHHHHHCCCCHHHHHC
SNASYSMSNDLKGGMTNLSGVYGTLLPDNNLNYSVQVGNTHGGNTSSGTSGYSSLNYRGA
CCCCEEECCCCCCCCCCCCCEEEEECCCCCCEEEEEECCCCCCCCCCCCCCCCCCEEECC
YGNTNVGYSRSGDSSQIYYGMSGGIIAHADGITFGQPLGDTMVLVKAPGADNVKIENQTG
CCCCCCCCCCCCCCCEEEEECCCCEEEEECCCCCCCCCCCEEEEEECCCCCCEEECCCCC
IHTDWRGYAILPFATEYRENRVALNANSLADNVELDETVVTVIPTHGAIARATFNAQIGG
CCCCCCCEEEEEEHHCCCCCEEEEECCCCCCCCEECCEEEEEEECCCEEEEEEECCCCCC
KVLMTLKYGNKSVPFGAIVTHGENKNGSIVAENGQVYLTGLPQSGQLQVSWGKDKNSNCI
EEEEEEEECCCCCCEEEEEECCCCCCCCEEEECCEEEEEECCCCCEEEEEECCCCCCCEE
VEYKLPEVSPGTLLNQQTAICR
EEEECCCCCCCCEECCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]