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The map label for this gene is ydeS

Identifier: 157160979

GI number: 157160979

Start: 1605132

End: 1605662

Strand: Reverse

Name: ydeS

Synonym: EcHS_A1588

Alternate gene names: 157160979

Gene position: 1605662-1605132 (Counterclockwise)

Preceding gene: 157160980

Following gene: 157160978

Centisome position: 34.58

GC content: 44.82

Gene sequence:

>531_bases
ATGAAATACAATAACATTATTTTCCTCGGTTTATGTCTGGGGTTAACCACCTATTCTGCTTTATCCGCAGATAGCGTTAT
TAAAATTAGCGGGCGCGTCCTCGATTATGGCTGCACAGTCTCATCGGATTCGCTTAATTTTACCGTAGATCTCCAAAAAA
ACAGTGCCAGACAATTTCCAACGACCGGTAGCACAAGTCCAGCCGTCCCTTTTCAGATTACGTTAAGTGAATGCAGCAAA
GGGACAACGGGGGTTCGGGTTGCATTTAACGGTATTGAGGATGCAGAAAATAATACTTTGTTGAAACTGGATGAAGGAAG
CAATACGGCCTCCGGTTTGGGTATAGAAATATTGGACGCAAATATGCGTCCGGTGAAACTGAATGATCTTCATGCCGGGA
TGCAGTGGATCCCACTGGTACCAGAACAGAACAATATTTTGCCTTACTCCGCTCGTCTGAAGTCAACTCAGAAGTCCGTC
AATCCGGGACTGGTGAGGGCTTCGGCAACCTTTACCCTTGAATTTCAATAA

Upstream 100 bases:

>100_bases
AAAAACTCAAACTGTATTGTCGAGTACAAGCTTCCTGAAGTTTCTCCTGGTACCTTACTGAACCAGCAGACAGCAATCTG
TCGCTAAGGAACAATAGATT

Downstream 100 bases:

>100_bases
TCAGAGTCAGATATGAAAAGACTTCACAAGAGGTTCCTGTTAGCTACGTTTTGCGCGTTATTCACAGCAACTCTCCAGGC
CGCCGATGTCACTATCACTG

Product: protein FimF-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 176; Mature: 176

Protein sequence:

>176_residues
MKYNNIIFLGLCLGLTTYSALSADSVIKISGRVLDYGCTVSSDSLNFTVDLQKNSARQFPTTGSTSPAVPFQITLSECSK
GTTGVRVAFNGIEDAENNTLLKLDEGSNTASGLGIEILDANMRPVKLNDLHAGMQWIPLVPEQNNILPYSARLKSTQKSV
NPGLVRASATFTLEFQ

Sequences:

>Translated_176_residues
MKYNNIIFLGLCLGLTTYSALSADSVIKISGRVLDYGCTVSSDSLNFTVDLQKNSARQFPTTGSTSPAVPFQITLSECSK
GTTGVRVAFNGIEDAENNTLLKLDEGSNTASGLGIEILDANMRPVKLNDLHAGMQWIPLVPEQNNILPYSARLKSTQKSV
NPGLVRASATFTLEFQ
>Mature_176_residues
MKYNNIIFLGLCLGLTTYSALSADSVIKISGRVLDYGCTVSSDSLNFTVDLQKNSARQFPTTGSTSPAVPFQITLSECSK
GTTGVRVAFNGIEDAENNTLLKLDEGSNTASGLGIEILDANMRPVKLNDLHAGMQWIPLVPEQNNILPYSARLKSTQKSV
NPGLVRASATFTLEFQ

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Fimbrium (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fimbrial protein family

Homologues:

Organism=Escherichia coli, GI1787781, Length=176, Percent_Identity=100, Blast_Score=362, Evalue=1e-101,
Organism=Escherichia coli, GI1790773, Length=171, Percent_Identity=45.0292397660819, Blast_Score=149, Evalue=9e-38,
Organism=Escherichia coli, GI87081805, Length=177, Percent_Identity=33.3333333333333, Blast_Score=74, Evalue=7e-15,
Organism=Escherichia coli, GI87081753, Length=166, Percent_Identity=33.1325301204819, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI87082421, Length=151, Percent_Identity=29.1390728476821, Blast_Score=68, Evalue=3e-13,
Organism=Escherichia coli, GI1787174, Length=156, Percent_Identity=32.6923076923077, Blast_Score=65, Evalue=2e-12,
Organism=Escherichia coli, GI1786746, Length=176, Percent_Identity=26.7045454545455, Blast_Score=60, Evalue=8e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YDES_ECOLI (P77789)

Other databases:

- EMBL:   U00096
- EMBL:   AP009048
- PIR:   C64904
- RefSeq:   AP_002126.1
- RefSeq:   NP_416021.1
- ProteinModelPortal:   P77789
- SMR:   P77789
- STRING:   P77789
- EnsemblBacteria:   EBESCT00000003646
- EnsemblBacteria:   EBESCT00000015925
- GeneID:   946047
- GenomeReviews:   AP009048_GR
- GenomeReviews:   U00096_GR
- KEGG:   ecj:JW1498
- KEGG:   eco:b1504
- EchoBASE:   EB3562
- EcoGene:   EG13801
- eggNOG:   COG3539
- GeneTree:   EBGT00050000008609
- HOGENOM:   HBG701898
- OMA:   SPVVPFQ
- ProtClustDB:   CLSK880032
- BioCyc:   EcoCyc:G6794-MONOMER
- Genevestigator:   P77789
- GO:   GO:0009289
- InterPro:   IPR008966
- InterPro:   IPR000259
- InterPro:   IPR014779
- Gene3D:   G3DSA:2.60.40.1090

Pfam domain/function: PF00419 Fimbrial; SSF49401 Adhes_bact

EC number: NA

Molecular weight: Translated: 18949; Mature: 18949

Theoretical pI: Translated: 5.89; Mature: 5.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKYNNIIFLGLCLGLTTYSALSADSVIKISGRVLDYGCTVSSDSLNFTVDLQKNSARQFP
CCCCCEEEEEEHHHHHHHHHCCCCCEEEEECEEEEECCEEECCCEEEEEEEECCCCCCCC
TTGSTSPAVPFQITLSECSKGTTGVRVAFNGIEDAENNTLLKLDEGSNTASGLGIEILDA
CCCCCCCCCEEEEEHHHCCCCCCEEEEEEECCCCCCCCEEEEEECCCCCCCCCEEEEEEC
NMRPVKLNDLHAGMQWIPLVPEQNNILPYSARLKSTQKSVNPGLVRASATFTLEFQ
CCCEEEECCCCCCCEEEEECCCCCCEECHHHHHHHHHCCCCCCEEEEEEEEEEEEC
>Mature Secondary Structure
MKYNNIIFLGLCLGLTTYSALSADSVIKISGRVLDYGCTVSSDSLNFTVDLQKNSARQFP
CCCCCEEEEEEHHHHHHHHHCCCCCEEEEECEEEEECCEEECCCEEEEEEEECCCCCCCC
TTGSTSPAVPFQITLSECSKGTTGVRVAFNGIEDAENNTLLKLDEGSNTASGLGIEILDA
CCCCCCCCCEEEEEHHHCCCCCCEEEEEEECCCCCCCCEEEEEECCCCCCCCCEEEEEEC
NMRPVKLNDLHAGMQWIPLVPEQNNILPYSARLKSTQKSVNPGLVRASATFTLEFQ
CCCEEEECCCCCCCEEEEECCCCCCEECHHHHHHHHHCCCCCCEEEEEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503