Click here to switch to the map view.

The map label for this gene is ycgX

Identifier: 157160661

GI number: 157160661

Start: 1259921

End: 1260325

Strand: Reverse

Name: ycgX

Synonym: EcHS_A1257

Alternate gene names: 157160661

Gene position: 1260325-1259921 (Counterclockwise)

Preceding gene: 157160662

Following gene: 157160659

Centisome position: 27.14

GC content: 36.79

Gene sequence:

>405_bases
ATGGATCAGGTCGTTGTTTTTCAAAAGATGTTTGAGCAAGTGAGAAAAGAGCAAAACTTCTCCTGGTTTTATTCAGAATT
AAAACATCACCGTATTGCACATTACATTTATTATCTGGCTACGGATAACATCAGAATTATTACTCACGATGATACGGTTT
TGTTATTAAGAGGAACCAGGAACCTGTTAAAAGTTAGTACGACCAAGAACCCTGCTAAAATAAAAGAGGCCGCATTGCTT
CATATTTGCGGAAAATCTACATTTCGGGAATACTGTTCAACACTGGCAGGCGCGGGCGTTTTCCGGTGGGTTACTGATGT
TAATCATAACAAACGCAGTTACTACGCCATTGATAATACGCTTTTATATATTGAAGATGTAGAAAATAATAAACCATTAA
TCTAG

Upstream 100 bases:

>100_bases
ACTCTGTACATATCACAGCCAAAGGACAGACCAGATTGAAGTGGTAAAACCGATCGTGCACACTACGCAGTCTCACAACT
AACAAGAGGTTATTATCCTG

Downstream 100 bases:

>100_bases
CTAAAGTTGGATACTTAAGAAATGCTTCATAATTCAGTAAGGCATTAGCATAATGGAAATAAAAGTGCAGAGACTATCTC
TATGGATGATTAATACTGTC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 134; Mature: 134

Protein sequence:

>134_residues
MDQVVVFQKMFEQVRKEQNFSWFYSELKHHRIAHYIYYLATDNIRIITHDDTVLLLRGTRNLLKVSTTKNPAKIKEAALL
HICGKSTFREYCSTLAGAGVFRWVTDVNHNKRSYYAIDNTLLYIEDVENNKPLI

Sequences:

>Translated_134_residues
MDQVVVFQKMFEQVRKEQNFSWFYSELKHHRIAHYIYYLATDNIRIITHDDTVLLLRGTRNLLKVSTTKNPAKIKEAALL
HICGKSTFREYCSTLAGAGVFRWVTDVNHNKRSYYAIDNTLLYIEDVENNKPLI
>Mature_134_residues
MDQVVVFQKMFEQVRKEQNFSWFYSELKHHRIAHYIYYLATDNIRIITHDDTVLLLRGTRNLLKVSTTKNPAKIKEAALL
HICGKSTFREYCSTLAGAGVFRWVTDVNHNKRSYYAIDNTLLYIEDVENNKPLI

Specific function: Unknown

COG id: COG5562

COG function: function code R; Phage envelope protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli ybcV and ydfO

Homologues:

Organism=Escherichia coli, GI1787408, Length=134, Percent_Identity=100, Blast_Score=281, Evalue=1e-77,
Organism=Escherichia coli, GI87081931, Length=134, Percent_Identity=44.0298507462687, Blast_Score=132, Evalue=9e-33,
Organism=Escherichia coli, GI87081758, Length=129, Percent_Identity=44.1860465116279, Blast_Score=123, Evalue=4e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YCGX_ECOLI (P75988)

Other databases:

- EMBL:   U00096
- EMBL:   AP009048
- PIR:   F64861
- RefSeq:   AP_001786.1
- RefSeq:   NP_415679.1
- ProteinModelPortal:   P75988
- SMR:   P75988
- DIP:   DIP-11564N
- STRING:   P75988
- EnsemblBacteria:   EBESCT00000002430
- EnsemblBacteria:   EBESCT00000017964
- GeneID:   945733
- GenomeReviews:   AP009048_GR
- GenomeReviews:   U00096_GR
- KEGG:   ecj:JW1148
- KEGG:   eco:b1161
- EchoBASE:   EB3994
- EcoGene:   EG14244
- eggNOG:   COG5562
- GeneTree:   EBGT00050000011110
- HOGENOM:   HBG467760
- OMA:   WIVELNK
- ProtClustDB:   CLSK879975
- BioCyc:   EcoCyc:G6601-MONOMER
- Genevestigator:   P75988
- InterPro:   IPR009833
- ProDom:   PD021249

Pfam domain/function: PF07166 DUF1398

EC number: NA

Molecular weight: Translated: 15769; Mature: 15769

Theoretical pI: Translated: 9.31; Mature: 9.31

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDQVVVFQKMFEQVRKEQNFSWFYSELKHHRIAHYIYYLATDNIRIITHDDTVLLLRGTR
CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHEEEEEEECCEEEEEECCEEEEEECCC
NLLKVSTTKNPAKIKEAALLHICGKSTFREYCSTLAGAGVFRWVTDVNHNKRSYYAIDNT
CEEEEECCCCHHHHHHHHHHHHHCHHHHHHHHHHHHCCCHHHHHHCCCCCCCEEEEECCE
LLYIEDVENNKPLI
EEEEEECCCCCCCC
>Mature Secondary Structure
MDQVVVFQKMFEQVRKEQNFSWFYSELKHHRIAHYIYYLATDNIRIITHDDTVLLLRGTR
CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHEEEEEEECCEEEEEECCEEEEEECCC
NLLKVSTTKNPAKIKEAALLHICGKSTFREYCSTLAGAGVFRWVTDVNHNKRSYYAIDNT
CEEEEECCCCHHHHHHHHHHHHHCHHHHHHHHHHHHCCCHHHHHHCCCCCCCEEEEECCE
LLYIEDVENNKPLI
EEEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503