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The map label for this gene is ybdM

Identifier: 157160098

GI number: 157160098

Start: 670828

End: 671445

Strand: Reverse

Name: ybdM

Synonym: EcHS_A0653

Alternate gene names: 157160098

Gene position: 671445-670828 (Counterclockwise)

Preceding gene: 157160099

Following gene: 157160096

Centisome position: 14.46

GC content: 46.76

Gene sequence:

>618_bases
ATGCAACAACGATTAACGCAGGATTTAACGCAATTTCTCGCCAGCTTGCCGGAAGATGATCGCATCAAAGCGATTAATGA
AATCCGCATGGCGATCCATCAGGTTAGCCCCTTTCGTGAAGAGCCAGTGGATTGCGTTCTGTGGGTTAAAAACAGCCAAC
TTATGCCTAATGATTACAACCCAAACAACGTGGCACCACCCGAAAAAAAACTGCTGCAAAAATCCATTGAAATAGATGGT
TTTACCCAACCCATTGTGGTCACACATACGGATAAAAATGCCATGGAAATCGTGGATGGTTTTCACCGCCATGAAATTGG
TAAAGGCTCATCATCATTAAAATTACGCTTAAAAGGTTATTTGCCGGTGACCTGTCTGGAAGGTACGCGTAATCAACGCA
TCGCCGCGACTATTCGTCATAATCGCGCTCGTGGACGCCATCAAATCACCGCCATGTCGGAAATCGTCCGTGAACTTAGC
CAGTTGGGATGGGACGATAATAAAATTGGCAAAGAGCTGGGAATGGACAGCGACGAAGTGCTGCGCCTGAAGCAAATTAA
CGGCCTGCAAGAGTTGTTTGCCGACCGTCAATATTCCCGCGCCTGGACGGTTAAATAG

Upstream 100 bases:

>100_bases
ATTACTGGTGTCGGGCATTATCATTTAGCCCCACAAAATCGAAGAACTATCAGCGTTATAACGAACGGATAAAAGGAAAA
CGTCAGGAATGGGGGATACT

Downstream 100 bases:

>100_bases
CTAAAGCTGGCGCAGGCGTTCAGCTGCTGCCAGCAACGTCGATTCCTTCTTGGCAAAACAGAGACGAATCAGTTTATGTG
GGAAGGGATCGGCGCAAAAC

Product: IbrB protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 205; Mature: 205

Protein sequence:

>205_residues
MQQRLTQDLTQFLASLPEDDRIKAINEIRMAIHQVSPFREEPVDCVLWVKNSQLMPNDYNPNNVAPPEKKLLQKSIEIDG
FTQPIVVTHTDKNAMEIVDGFHRHEIGKGSSSLKLRLKGYLPVTCLEGTRNQRIAATIRHNRARGRHQITAMSEIVRELS
QLGWDDNKIGKELGMDSDEVLRLKQINGLQELFADRQYSRAWTVK

Sequences:

>Translated_205_residues
MQQRLTQDLTQFLASLPEDDRIKAINEIRMAIHQVSPFREEPVDCVLWVKNSQLMPNDYNPNNVAPPEKKLLQKSIEIDG
FTQPIVVTHTDKNAMEIVDGFHRHEIGKGSSSLKLRLKGYLPVTCLEGTRNQRIAATIRHNRARGRHQITAMSEIVRELS
QLGWDDNKIGKELGMDSDEVLRLKQINGLQELFADRQYSRAWTVK
>Mature_205_residues
MQQRLTQDLTQFLASLPEDDRIKAINEIRMAIHQVSPFREEPVDCVLWVKNSQLMPNDYNPNNVAPPEKKLLQKSIEIDG
FTQPIVVTHTDKNAMEIVDGFHRHEIGKGSSSLKLRLKGYLPVTCLEGTRNQRIAATIRHNRARGRHQITAMSEIVRELS
QLGWDDNKIGKELGMDSDEVLRLKQINGLQELFADRQYSRAWTVK

Specific function: Unknown

COG id: COG1475

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786817, Length=205, Percent_Identity=100, Blast_Score=428, Evalue=1e-121,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YBDM_ECOLI (P77174)

Other databases:

- EMBL:   U82598
- EMBL:   U00096
- EMBL:   AP009048
- PIR:   G64793
- RefSeq:   AP_001249.1
- RefSeq:   NP_415134.1
- ProteinModelPortal:   P77174
- STRING:   P77174
- EnsemblBacteria:   EBESCT00000004140
- EnsemblBacteria:   EBESCT00000015682
- GeneID:   945206
- GenomeReviews:   AP009048_GR
- GenomeReviews:   U00096_GR
- KEGG:   ecj:JW0594
- KEGG:   eco:b0601
- EchoBASE:   EB3303
- EcoGene:   EG13532
- eggNOG:   COG1475
- GeneTree:   EBGT00050000010567
- HOGENOM:   HBG303393
- OMA:   EKIRANS
- ProtClustDB:   CLSK879706
- BioCyc:   EcoCyc:G6330-MONOMER
- Genevestigator:   P77174
- InterPro:   IPR003115
- SMART:   SM00470

Pfam domain/function: PF02195 ParBc; SSF110849 ParBc

EC number: NA

Molecular weight: Translated: 23539; Mature: 23539

Theoretical pI: Translated: 8.71; Mature: 8.71

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQQRLTQDLTQFLASLPEDDRIKAINEIRMAIHQVSPFREEPVDCVLWVKNSQLMPNDYN
CCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCC
PNNVAPPEKKLLQKSIEIDGFTQPIVVTHTDKNAMEIVDGFHRHEIGKGSSSLKLRLKGY
CCCCCCCHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCEEEEEECC
LPVTCLEGTRNQRIAATIRHNRARGRHQITAMSEIVRELSQLGWDDNKIGKELGMDSDEV
CEEEEECCCCCCEEEHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCHHHH
LRLKQINGLQELFADRQYSRAWTVK
HHHHHHCCHHHHHCCCHHCCEECCC
>Mature Secondary Structure
MQQRLTQDLTQFLASLPEDDRIKAINEIRMAIHQVSPFREEPVDCVLWVKNSQLMPNDYN
CCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCC
PNNVAPPEKKLLQKSIEIDGFTQPIVVTHTDKNAMEIVDGFHRHEIGKGSSSLKLRLKGY
CCCCCCCHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCEEEEEECC
LPVTCLEGTRNQRIAATIRHNRARGRHQITAMSEIVRELSQLGWDDNKIGKELGMDSDEV
CEEEEECCCCCCEEEHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCHHHH
LRLKQINGLQELFADRQYSRAWTVK
HHHHHHCCHHHHHCCCHHCCEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503