Click here to switch to the map view.

The map label for this gene is sfmC [H]

Identifier: 157160055

GI number: 157160055

Start: 618505

End: 619197

Strand: Direct

Name: sfmC [H]

Synonym: EcHS_A0606

Alternate gene names: 157160055

Gene position: 618505-619197 (Clockwise)

Preceding gene: 157160054

Following gene: 157160056

Centisome position: 13.32

GC content: 42.42

Gene sequence:

>693_bases
ATGATGACTAAAATAAAGTTATTGATGCTCATTATATTTTATTTAATCATTTCGGCCAGCGCCCATGCTGCCGGAGGGAT
CGCATTAGGTGCCACGCGTATTATTTATCCCGCTGATGCTAAACAGACTGCGGTATGGATTAGAAATAGCCATACCAATG
AGCGCTTTCTGGTCAATTCGTGGATTGAAAACAGCAGCGGTGTAAAAGAAAAGTCATTCATCATTACACCGCCACTGTTT
GTTAGTGAACCCAAAAGCGAAAATACCTTGCGTATTATTTACACCGGTCCACCGCTGGCAGCAGATCGTGAGTCTCTGTT
CTGGATGAATGTTAAGACGATCCCTTCGGTAGATAAAAATGCATTGAACGGCAGGAATGTTTTGCAACTGGCGATTTTAT
CGCGCATGAAATTATTTCTCCGTCTAATTCAATTACAAGAATTACCCGCAGAAGCACCGGACACACTCAAGTTTTCGCGA
TCCGGTAACTATATCAATGTTCATAATCCCTCACCTTTTTATGTCACTCTGGTTAACTTACAAGTGGGCAACCAAAAGTT
GGGGAATGCTATGGCTGCACCCAGAGTTAATTCACAAATTCCCTTACCCTCAGGAGTGCAGGGAAAGCTGAAATTTCAGA
CCGTTAATGATTATGGTTCAGTAACCCCGGTCAGAGAAGTGAACTTAAACTAA

Upstream 100 bases:

>100_bases
TTATTAAATGAAAAGGGAATGATGTGTTGTAAGAAACCAAAGCAATCATTTCTTTATATTTCTTATTTTTGCCGTCAGGA
ATACACAAGGCGTATTAACT

Downstream 100 bases:

>100_bases
CCGAATCATCTGACAATATCAGAGCTAATTATGAAAATACCCACTACTACGGATATTCCGCAGAGGTATACCTGGTGTCT
GGCCGGAATTTGTTATTCAT

Product: chaperone protein FimC-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 230; Mature: 230

Protein sequence:

>230_residues
MMTKIKLLMLIIFYLIISASAHAAGGIALGATRIIYPADAKQTAVWIRNSHTNERFLVNSWIENSSGVKEKSFIITPPLF
VSEPKSENTLRIIYTGPPLAADRESLFWMNVKTIPSVDKNALNGRNVLQLAILSRMKLFLRLIQLQELPAEAPDTLKFSR
SGNYINVHNPSPFYVTLVNLQVGNQKLGNAMAAPRVNSQIPLPSGVQGKLKFQTVNDYGSVTPVREVNLN

Sequences:

>Translated_230_residues
MMTKIKLLMLIIFYLIISASAHAAGGIALGATRIIYPADAKQTAVWIRNSHTNERFLVNSWIENSSGVKEKSFIITPPLF
VSEPKSENTLRIIYTGPPLAADRESLFWMNVKTIPSVDKNALNGRNVLQLAILSRMKLFLRLIQLQELPAEAPDTLKFSR
SGNYINVHNPSPFYVTLVNLQVGNQKLGNAMAAPRVNSQIPLPSGVQGKLKFQTVNDYGSVTPVREVNLN
>Mature_230_residues
MMTKIKLLMLIIFYLIISASAHAAGGIALGATRIIYPADAKQTAVWIRNSHTNERFLVNSWIENSSGVKEKSFIITPPLF
VSEPKSENTLRIIYTGPPLAADRESLFWMNVKTIPSVDKNALNGRNVLQLAILSRMKLFLRLIQLQELPAEAPDTLKFSR
SGNYINVHNPSPFYVTLVNLQVGNQKLGNAMAAPRVNSQIPLPSGVQGKLKFQTVNDYGSVTPVREVNLN

Specific function: Required for the biogenesis of sfmA fimbriae. Binds and interact with sfmH [H]

COG id: COG3121

COG function: function code NU; P pilus assembly protein, chaperone PapD

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Ig-like (immunoglobulin-like) domain [H]

Homologues:

Organism=Escherichia coli, GI1786743, Length=230, Percent_Identity=99.1304347826087, Blast_Score=462, Evalue=1e-132,
Organism=Escherichia coli, GI1790771, Length=218, Percent_Identity=46.3302752293578, Blast_Score=204, Evalue=3e-54,
Organism=Escherichia coli, GI1787171, Length=207, Percent_Identity=40.0966183574879, Blast_Score=161, Evalue=3e-41,
Organism=Escherichia coli, GI1789532, Length=220, Percent_Identity=34.5454545454545, Blast_Score=137, Evalue=8e-34,
Organism=Escherichia coli, GI1786333, Length=239, Percent_Identity=30.5439330543933, Blast_Score=99, Evalue=3e-22,
Organism=Escherichia coli, GI1786936, Length=233, Percent_Identity=33.9055793991416, Blast_Score=97, Evalue=9e-22,
Organism=Escherichia coli, GI87081806, Length=236, Percent_Identity=27.1186440677966, Blast_Score=87, Evalue=6e-19,
Organism=Escherichia coli, GI1788677, Length=208, Percent_Identity=33.6538461538462, Blast_Score=85, Evalue=4e-18,
Organism=Escherichia coli, GI1788428, Length=221, Percent_Identity=29.8642533936652, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI87082203, Length=170, Percent_Identity=32.3529411764706, Blast_Score=74, Evalue=6e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008962
- InterPro:   IPR001829
- InterPro:   IPR016148
- InterPro:   IPR018046
- InterPro:   IPR016147 [H]

Pfam domain/function: PF02753 Pili_assembly_C; PF00345 Pili_assembly_N [H]

EC number: NA

Molecular weight: Translated: 25501; Mature: 25501

Theoretical pI: Translated: 10.53; Mature: 10.53

Prosite motif: PS00635 PILI_CHAPERONE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMTKIKLLMLIIFYLIISASAHAAGGIALGATRIIYPADAKQTAVWIRNSHTNERFLVNS
CCHHHHHHHHHHHHHHHHCCCCCCCCEEECCEEEEEECCCCCEEEEEECCCCCCEEEEEE
WIENSSGVKEKSFIITPPLFVSEPKSENTLRIIYTGPPLAADRESLFWMNVKTIPSVDKN
CCCCCCCCCCCEEEECCCCEEECCCCCCEEEEEECCCCCCCCCCCEEEEEEECCCCCCCC
ALNGRNVLQLAILSRMKLFLRLIQLQELPAEAPDTLKFSRSGNYINVHNPSPFYVTLVNL
CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCEEEECCCCCEEEEEEEE
QVGNQKLGNAMAAPRVNSQIPLPSGVQGKLKFQTVNDYGSVTPVREVNLN
EECCHHHCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCEEEECCC
>Mature Secondary Structure
MMTKIKLLMLIIFYLIISASAHAAGGIALGATRIIYPADAKQTAVWIRNSHTNERFLVNS
CCHHHHHHHHHHHHHHHHCCCCCCCCEEECCEEEEEECCCCCEEEEEECCCCCCEEEEEE
WIENSSGVKEKSFIITPPLFVSEPKSENTLRIIYTGPPLAADRESLFWMNVKTIPSVDKN
CCCCCCCCCCCEEEECCCCEEECCCCCCEEEEEECCCCCCCCCCCEEEEEEECCCCCCCC
ALNGRNVLQLAILSRMKLFLRLIQLQELPAEAPDTLKFSRSGNYINVHNPSPFYVTLVNL
CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCEEEECCCCCEEEEEEEE
QVGNQKLGNAMAAPRVNSQIPLPSGVQGKLKFQTVNDYGSVTPVREVNLN
EECCHHHCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]