Click here to switch to the map view.

The map label for this gene is fimD2 [H]

Identifier: 157160056

GI number: 157160056

Start: 619228

End: 621837

Strand: Direct

Name: fimD2 [H]

Synonym: EcHS_A0607

Alternate gene names: 157160056

Gene position: 619228-621837 (Clockwise)

Preceding gene: 157160055

Following gene: 157160057

Centisome position: 13.34

GC content: 47.55

Gene sequence:

>2610_bases
ATGAAAATACCCACTACTACGGATATTCCGCAGAGGTATACCTGGTGTCTGGCCGGAATTTGTTATTCATCTCTTGCCAT
TTTACCCTCCTTTTTAAGCTATGCGGAAAGTTATTTCAACCCGGCATTTTTATTAGAGAATGGCACATCCGTTGCTGATT
TATCGCGCTTTGAGAGAGGTAATCATCAACCTGCGGGCGTGTATCGGGTAGATCTCTGGCGTAATGATGAGTTCATTGGT
TCACAGGATATCGTATTTGAATCGACAACAGAAAATACAGGTGATAAATCAGGTGGGTTAATGCCCTGTTTTAACCAGGT
ACTCCTTGAACGAATTAGCCTTAATAGCAGTGCATTTCCCGAGTTAGCCCAGCAGCAAAACAATAAATGCATCAATTTAC
TGAAAGCTGTACCTGATGCCACAATTAACTTTGATTTTGCAGCGATGCGCCTGAACATCACTATTCCTCAGATAGCGTTG
TTGAGTAGCGCTCACGGTTACATTCCGCCTGAAGAGTGGGATGAAGGTATTCCTGCTTTACTCCTGAATTATAATTTCAC
CGGTAACAGAGGTAATGGTAACGATAGCTATTTTTTTAGTGAGCTCAGCGGGATTAATATTGGCCCGTGGCGTTTACGCA
ACAATGGTTCCTGGAACTATTTTCGCGGAAATGGATATCATTCAGAACAGTGGAATAATATTGGCACCTGGGTACAGCGC
GCCATTATTCCGCTGAAAAGTGAACTGGTAATGGGAGACGGCAATACAGGAAGTGATATTTTCGATGGTGTTGGATTTCG
TGGTATACGGCTTTACTCTTCCGATAATATGTATCCTGATAGCCAGCAAGGGTTTGCCCCAACAGTACGTGGGATTGCCC
GTACGGCGGCCCAGCTAACGATTCGGCAAAATGGTTTTATTATCTATCAAAGCTATGTTTCCCCCGGCGCTTTTGAAATT
ACAGATTTGCACCCGACATCTTCAAATGGCGATCTGGACGTCACCATCGACGAGCGCGATGGTAATCAGCAGAATTACAC
AATTCCGTATTCAACAGTGCCAATTTTACAACGCGAAGGGCGTTTCAAATTTGACCTGACGGCGGGCGATTTTCGTAGCG
GTAATAGTCAGCAATCATCGCCTTTCTTTTTTCAGGGTACGGCACTCGGCGGTTTACCACAGGAATTTACTGCCTACGGC
GGGACGCAATTATCTGCCAATTACACCGCCTTTTTATTAGGGCTGGGGCGCAACCTCGGGAACTGGGGCACAGTGTCGCT
GGATGTGACCCATGCGCGCAGTCAGTTAGCCGACGACAGTCGTCATGAGGGGGATTCCATTCGCTTCCTCTATGCGAAAT
CGATGAACACCTTCGGCACCAATTTTCAGTTAATGGGTTACCGCTATTCGACACAAGGTTTTTATACCCTTGATGATGTT
GCGTATCGTCGAATGGAGGGGTACGAATATGATTACGATTACGACGGTGAGCATCGCGATGAACCGATAATCGTGAATTA
CCACAATTTACGCTTTAGCCGTAAAGACCGTTTGCAGTTAAATATTTCACAATCACTTAATGACTTTGGCTCGCTTTATA
TCTCTGGTACCCATCAAAAATACTGGAATACTTCGGATTCAGATACCTGGTATCAGGTGGGGTATACCAGCAGCTGGGTT
GGCATCAGTTATTCACTCTCATTTTCGTGGAATGAATCTGTAGGGATCCCCGATAACGAACGTATTGTCGGACTTAATGT
TTCAGTGCCTTTCAATGTTCTGACCAAACGTCGCTACACCCGGGAAAATGCGCTCGACCGCGCTTATGCCTCCTTTAACG
CCAACCGTAACAGCAACGGGCAAAATAGCTGGCTGGCAGGTGTAGGTGGGACCTTACTGGAAGGCCACAACCTGAGTTAT
CACGTAAGCCAGGGTGATACCTCGAATAATGGGTATACGGGCAGCGCCACGGCAAACTTGCAGGCCGCTTACGGTACGCT
GGGGGTCGGGTATAACTACGACCGCGATCAACATGACGTTAACTGGCAGCTGTCTGGCGGTGTGGTCGGGCATGAAAATG
GCATAACGCTGAGCCAGCCTTTAGGGGATACCAATGTTTTGATTAAAGCGCCTGGCGCAGGCGGTGTACGCATTGAAAAT
CAAACTGGCATTTTAACCGACTGGCGCGGCTATGCGGTGATGCCGTATGCCACGGTTTATCGGTATAACCGTATCGCGCT
TGATACCAATACGATGGGGAATTCCATCGATGTTGAAAAAAATATTAGCAGCGTTGTGCCGACGCAAGGCGCGTTGGTTC
GTGCCAATTTTGATACCCGCATAGGCGTGCGGGCGCTCATTACCGTTACCCAGGGCAGAAAACCGGTGCCGTTTGGATCA
CTGGTACGGGAAAACAGTACCGGAATAACCAGTATGGTGGGTGATGACGGGCAAGTTTATTTAAGTGGTGCGCCATTGTC
TGGTGAATTACTGGTTCAGTGGGGAGACGGCGCGAACTCACGCTGCATTGCGCACTATGTATTGCCGAAGCAAAGCTTAC
AGCAAGCCGTCACAGTTATTTCGGCAGTTTGCACACATCCTGGCTCATAA

Upstream 100 bases:

>100_bases
AAAGCTGAAATTTCAGACCGTTAATGATTATGGTTCAGTAACCCCGGTCAGAGAAGTGAACTTAAACTAACCGAATCATC
TGACAATATCAGAGCTAATT

Downstream 100 bases:

>100_bases
AGGAAATTATCAATGAAGATAATCTGCAGATTATTATTGGCGATGGCATGTTTGTGGTTAACAAACATATCCTGGGCTAC
TGTTTGTGCAAATAGTACTG

Product: outer membrane usher protein fimD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 869; Mature: 869

Protein sequence:

>869_residues
MKIPTTTDIPQRYTWCLAGICYSSLAILPSFLSYAESYFNPAFLLENGTSVADLSRFERGNHQPAGVYRVDLWRNDEFIG
SQDIVFESTTENTGDKSGGLMPCFNQVLLERISLNSSAFPELAQQQNNKCINLLKAVPDATINFDFAAMRLNITIPQIAL
LSSAHGYIPPEEWDEGIPALLLNYNFTGNRGNGNDSYFFSELSGINIGPWRLRNNGSWNYFRGNGYHSEQWNNIGTWVQR
AIIPLKSELVMGDGNTGSDIFDGVGFRGIRLYSSDNMYPDSQQGFAPTVRGIARTAAQLTIRQNGFIIYQSYVSPGAFEI
TDLHPTSSNGDLDVTIDERDGNQQNYTIPYSTVPILQREGRFKFDLTAGDFRSGNSQQSSPFFFQGTALGGLPQEFTAYG
GTQLSANYTAFLLGLGRNLGNWGTVSLDVTHARSQLADDSRHEGDSIRFLYAKSMNTFGTNFQLMGYRYSTQGFYTLDDV
AYRRMEGYEYDYDYDGEHRDEPIIVNYHNLRFSRKDRLQLNISQSLNDFGSLYISGTHQKYWNTSDSDTWYQVGYTSSWV
GISYSLSFSWNESVGIPDNERIVGLNVSVPFNVLTKRRYTRENALDRAYASFNANRNSNGQNSWLAGVGGTLLEGHNLSY
HVSQGDTSNNGYTGSATANLQAAYGTLGVGYNYDRDQHDVNWQLSGGVVGHENGITLSQPLGDTNVLIKAPGAGGVRIEN
QTGILTDWRGYAVMPYATVYRYNRIALDTNTMGNSIDVEKNISSVVPTQGALVRANFDTRIGVRALITVTQGRKPVPFGS
LVRENSTGITSMVGDDGQVYLSGAPLSGELLVQWGDGANSRCIAHYVLPKQSLQQAVTVISAVCTHPGS

Sequences:

>Translated_869_residues
MKIPTTTDIPQRYTWCLAGICYSSLAILPSFLSYAESYFNPAFLLENGTSVADLSRFERGNHQPAGVYRVDLWRNDEFIG
SQDIVFESTTENTGDKSGGLMPCFNQVLLERISLNSSAFPELAQQQNNKCINLLKAVPDATINFDFAAMRLNITIPQIAL
LSSAHGYIPPEEWDEGIPALLLNYNFTGNRGNGNDSYFFSELSGINIGPWRLRNNGSWNYFRGNGYHSEQWNNIGTWVQR
AIIPLKSELVMGDGNTGSDIFDGVGFRGIRLYSSDNMYPDSQQGFAPTVRGIARTAAQLTIRQNGFIIYQSYVSPGAFEI
TDLHPTSSNGDLDVTIDERDGNQQNYTIPYSTVPILQREGRFKFDLTAGDFRSGNSQQSSPFFFQGTALGGLPQEFTAYG
GTQLSANYTAFLLGLGRNLGNWGTVSLDVTHARSQLADDSRHEGDSIRFLYAKSMNTFGTNFQLMGYRYSTQGFYTLDDV
AYRRMEGYEYDYDYDGEHRDEPIIVNYHNLRFSRKDRLQLNISQSLNDFGSLYISGTHQKYWNTSDSDTWYQVGYTSSWV
GISYSLSFSWNESVGIPDNERIVGLNVSVPFNVLTKRRYTRENALDRAYASFNANRNSNGQNSWLAGVGGTLLEGHNLSY
HVSQGDTSNNGYTGSATANLQAAYGTLGVGYNYDRDQHDVNWQLSGGVVGHENGITLSQPLGDTNVLIKAPGAGGVRIEN
QTGILTDWRGYAVMPYATVYRYNRIALDTNTMGNSIDVEKNISSVVPTQGALVRANFDTRIGVRALITVTQGRKPVPFGS
LVRENSTGITSMVGDDGQVYLSGAPLSGELLVQWGDGANSRCIAHYVLPKQSLQQAVTVISAVCTHPGS
>Mature_869_residues
MKIPTTTDIPQRYTWCLAGICYSSLAILPSFLSYAESYFNPAFLLENGTSVADLSRFERGNHQPAGVYRVDLWRNDEFIG
SQDIVFESTTENTGDKSGGLMPCFNQVLLERISLNSSAFPELAQQQNNKCINLLKAVPDATINFDFAAMRLNITIPQIAL
LSSAHGYIPPEEWDEGIPALLLNYNFTGNRGNGNDSYFFSELSGINIGPWRLRNNGSWNYFRGNGYHSEQWNNIGTWVQR
AIIPLKSELVMGDGNTGSDIFDGVGFRGIRLYSSDNMYPDSQQGFAPTVRGIARTAAQLTIRQNGFIIYQSYVSPGAFEI
TDLHPTSSNGDLDVTIDERDGNQQNYTIPYSTVPILQREGRFKFDLTAGDFRSGNSQQSSPFFFQGTALGGLPQEFTAYG
GTQLSANYTAFLLGLGRNLGNWGTVSLDVTHARSQLADDSRHEGDSIRFLYAKSMNTFGTNFQLMGYRYSTQGFYTLDDV
AYRRMEGYEYDYDYDGEHRDEPIIVNYHNLRFSRKDRLQLNISQSLNDFGSLYISGTHQKYWNTSDSDTWYQVGYTSSWV
GISYSLSFSWNESVGIPDNERIVGLNVSVPFNVLTKRRYTRENALDRAYASFNANRNSNGQNSWLAGVGGTLLEGHNLSY
HVSQGDTSNNGYTGSATANLQAAYGTLGVGYNYDRDQHDVNWQLSGGVVGHENGITLSQPLGDTNVLIKAPGAGGVRIEN
QTGILTDWRGYAVMPYATVYRYNRIALDTNTMGNSIDVEKNISSVVPTQGALVRANFDTRIGVRALITVTQGRKPVPFGS
LVRENSTGITSMVGDDGQVYLSGAPLSGELLVQWGDGANSRCIAHYVLPKQSLQQAVTVISAVCTHPGS

Specific function: Involved in the export and assembly of sfmA fimbrial subunits across the outer membrane [H]

COG id: COG3188

COG function: function code NU; P pilus assembly protein, porin PapC

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fimbrial export usher family [H]

Homologues:

Organism=Escherichia coli, GI1786744, Length=869, Percent_Identity=98.7341772151899, Blast_Score=1755, Evalue=0.0,
Organism=Escherichia coli, GI1790772, Length=878, Percent_Identity=46.6970387243736, Blast_Score=797, Evalue=0.0,
Organism=Escherichia coli, GI1787172, Length=852, Percent_Identity=44.7183098591549, Blast_Score=742, Evalue=0.0,
Organism=Escherichia coli, GI1789533, Length=860, Percent_Identity=37.2093023255814, Blast_Score=536, Evalue=1e-153,
Organism=Escherichia coli, GI1786332, Length=873, Percent_Identity=31.1569301260023, Blast_Score=380, Evalue=1e-106,
Organism=Escherichia coli, GI1788427, Length=788, Percent_Identity=29.9492385786802, Blast_Score=303, Evalue=3e-83,
Organism=Escherichia coli, GI87081778, Length=787, Percent_Identity=27.700127064803, Blast_Score=249, Evalue=4e-67,
Organism=Escherichia coli, GI1789610, Length=777, Percent_Identity=25.4826254826255, Blast_Score=142, Evalue=1e-34,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000015
- InterPro:   IPR018030 [H]

Pfam domain/function: PF00577 Usher [H]

EC number: NA

Molecular weight: Translated: 96140; Mature: 96140

Theoretical pI: Translated: 5.20; Mature: 5.20

Prosite motif: PS01151 FIMBRIAL_USHER

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIPTTTDIPQRYTWCLAGICYSSLAILPSFLSYAESYFNPAFLLENGTSVADLSRFERG
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHCC
NHQPAGVYRVDLWRNDEFIGSQDIVFESTTENTGDKSGGLMPCFNQVLLERISLNSSAFP
CCCCCCEEEEEEECCCCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCH
ELAQQQNNKCINLLKAVPDATINFDFAAMRLNITIPQIALLSSAHGYIPPEEWDEGIPAL
HHHHHCCCHHHHHHHHCCCCEEEEEEEEEEEEEECCCEEEECCCCCCCCCHHHHCCCCEE
LLNYNFTGNRGNGNDSYFFSELSGINIGPWRLRNNGSWNYFRGNGYHSEQWNNIGTWVQR
EEEEEECCCCCCCCCCEEEEECCCCCCCCEEEECCCCCCEEECCCCCCCCCCHHHHHHHH
AIIPLKSELVMGDGNTGSDIFDGVGFRGIRLYSSDNMYPDSQQGFAPTVRGIARTAAQLT
HHCCCCCEEEEECCCCCCHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHEEEE
IRQNGFIIYQSYVSPGAFEITDLHPTSSNGDLDVTIDERDGNQQNYTIPYSTVPILQREG
EECCCEEEEEECCCCCCEEEEECCCCCCCCCEEEEEECCCCCCCEEEECCCCCCCEECCC
RFKFDLTAGDFRSGNSQQSSPFFFQGTALGGLPQEFTAYGGTQLSANYTAFLLGLGRNLG
CEEEEEECCCCCCCCCCCCCCEEEECCCCCCCCHHHHHCCCEEECCCCEEEEEECCCCCC
NWGTVSLDVTHARSQLADDSRHEGDSIRFLYAKSMNTFGTNFQLMGYRYSTQGFYTLDDV
CCEEEEEEEHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCCEEEEEEEECCCCCEEHHHH
AYRRMEGYEYDYDYDGEHRDEPIIVNYHNLRFSRKDRLQLNISQSLNDFGSLYISGTHQK
HHHHHCCCCCCCCCCCCCCCCCEEEEEECEEECCCCCEEEEHHHCCCCCCEEEEEECCHH
YWNTSDSDTWYQVGYTSSWVGISYSLSFSWNESVGIPDNERIVGLNVSVPFNVLTKRRYT
CCCCCCCCCEEEECCCEEEEEEEEEEEEECCCCCCCCCCCEEEEEEECCCHHHHHHHHHH
RENALDRAYASFNANRNSNGQNSWLAGVGGTLLEGHNLSYHVSQGDTSNNGYTGSATANL
HHHHHHHHHHHCCCCCCCCCCCCEEECCCCEEEECCCCEEEEECCCCCCCCEECCCCCEE
QAAYGTLGVGYNYDRDQHDVNWQLSGGVVGHENGITLSQPLGDTNVLIKAPGAGGVRIEN
EEECEEEECCCCCCCCCCCCCEEECCCEEECCCCEEEECCCCCCEEEEECCCCCCEEEEC
QTGILTDWRGYAVMPYATVYRYNRIALDTNTMGNSIDVEKNISSVVPTQGALVRANFDTR
CCCEEECCCCEEECCCHHHEEEEEEEEECCCCCCEEECCCCHHHHCCCCCEEEEECCCCC
IGVRALITVTQGRKPVPFGSLVRENSTGITSMVGDDGQVYLSGAPLSGELLVQWGDGANS
CCEEEEEEEECCCCCCCHHHHHCCCCCCCEEEECCCCEEEEECCCCCCEEEEEECCCCCC
RCIAHYVLPKQSLQQAVTVISAVCTHPGS
CEEEEEECCHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MKIPTTTDIPQRYTWCLAGICYSSLAILPSFLSYAESYFNPAFLLENGTSVADLSRFERG
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHCC
NHQPAGVYRVDLWRNDEFIGSQDIVFESTTENTGDKSGGLMPCFNQVLLERISLNSSAFP
CCCCCCEEEEEEECCCCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCH
ELAQQQNNKCINLLKAVPDATINFDFAAMRLNITIPQIALLSSAHGYIPPEEWDEGIPAL
HHHHHCCCHHHHHHHHCCCCEEEEEEEEEEEEEECCCEEEECCCCCCCCCHHHHCCCCEE
LLNYNFTGNRGNGNDSYFFSELSGINIGPWRLRNNGSWNYFRGNGYHSEQWNNIGTWVQR
EEEEEECCCCCCCCCCEEEEECCCCCCCCEEEECCCCCCEEECCCCCCCCCCHHHHHHHH
AIIPLKSELVMGDGNTGSDIFDGVGFRGIRLYSSDNMYPDSQQGFAPTVRGIARTAAQLT
HHCCCCCEEEEECCCCCCHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHEEEE
IRQNGFIIYQSYVSPGAFEITDLHPTSSNGDLDVTIDERDGNQQNYTIPYSTVPILQREG
EECCCEEEEEECCCCCCEEEEECCCCCCCCCEEEEEECCCCCCCEEEECCCCCCCEECCC
RFKFDLTAGDFRSGNSQQSSPFFFQGTALGGLPQEFTAYGGTQLSANYTAFLLGLGRNLG
CEEEEEECCCCCCCCCCCCCCEEEECCCCCCCCHHHHHCCCEEECCCCEEEEEECCCCCC
NWGTVSLDVTHARSQLADDSRHEGDSIRFLYAKSMNTFGTNFQLMGYRYSTQGFYTLDDV
CCEEEEEEEHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCCEEEEEEEECCCCCEEHHHH
AYRRMEGYEYDYDYDGEHRDEPIIVNYHNLRFSRKDRLQLNISQSLNDFGSLYISGTHQK
HHHHHCCCCCCCCCCCCCCCCCEEEEEECEEECCCCCEEEEHHHCCCCCCEEEEEECCHH
YWNTSDSDTWYQVGYTSSWVGISYSLSFSWNESVGIPDNERIVGLNVSVPFNVLTKRRYT
CCCCCCCCCEEEECCCEEEEEEEEEEEEECCCCCCCCCCCEEEEEEECCCHHHHHHHHHH
RENALDRAYASFNANRNSNGQNSWLAGVGGTLLEGHNLSYHVSQGDTSNNGYTGSATANL
HHHHHHHHHHHCCCCCCCCCCCCEEECCCCEEEECCCCEEEEECCCCCCCCEECCCCCEE
QAAYGTLGVGYNYDRDQHDVNWQLSGGVVGHENGITLSQPLGDTNVLIKAPGAGGVRIEN
EEECEEEECCCCCCCCCCCCCEEECCCEEECCCCEEEECCCCCCEEEEECCCCCCEEEEC
QTGILTDWRGYAVMPYATVYRYNRIALDTNTMGNSIDVEKNISSVVPTQGALVRANFDTR
CCCEEECCCCEEECCCHHHEEEEEEEEECCCCCCEEECCCCHHHHCCCCCEEEEECCCCC
IGVRALITVTQGRKPVPFGSLVRENSTGITSMVGDDGQVYLSGAPLSGELLVQWGDGANS
CCEEEEEEEECCCCCCCHHHHHCCCCCCCEEEECCCCEEEEECCCCCCEEEEEECCCCCC
RCIAHYVLPKQSLQQAVTVISAVCTHPGS
CEEEEEECCHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]