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The map label for this gene is ycdZ [H]

Identifier: 156977134

GI number: 156977134

Start: 1109544

End: 1110164

Strand: Reverse

Name: ycdZ [H]

Synonym: VIBHAR_05920

Alternate gene names: 156977134

Gene position: 1110164-1109544 (Counterclockwise)

Preceding gene: 156977136

Following gene: 156977130

Centisome position: 50.37

GC content: 46.22

Gene sequence:

>621_bases
ATGCAACAAAATAGGAGCTTAGTGAGATCTAGATCACCGAAGTTCGCATGGGATATGCCTAGTATTGACTGCCTGATTTC
AATGTATGAAGGCAGTTTTCAAACCAAATGGTGCGAAACTAACGAAGCGGGTAAGAATACCATGACCACACTTTTAGCTA
TTTCAATTACAACTGGCATTCTCTCTGGCGTATGGGGCTGGATCGCTATCTCCCTTGGCCTGTTATCTTGGGCTGGCTTT
CTTGGCTGCACGAGTTACTTTGCGTCCCCGACAAGTGGCTTGAAAGGGCTAGCAGAAAGCTTGATTACCAATATGACAGG
TGTTTTCTGGGCGATGGTTATCATCTATGGCTCGACTTACGTGGGTATGGAGATCATCGGATATGTAATTACAGCTATCG
TAGCGTTCTTCATGTGTATTCAAGCGAAACAAGCTTGGTTAGCGTACATCCCTGGTACTTTCATTGGCTCATGCGCGACT
TTTGCTGCAGACGGCAATTGGCAACTTGTGGTGCCATCGCTGATTTTAGGTGGCGTGTTTGGTTACCTAATGAAAGCAAC
AGGTCTTTGGTTGCATGCGAAATCAGCCGCTACTTCTTCGCTCGCAGAGCAAGTACAGTAG

Upstream 100 bases:

>100_bases
CCTTTTTGTCATTTACTGCTAATTTTTCCCAACTGATTGTGATTTTGTTATTTTCGAAATCTGTTGATTTATCGGTTGCG
TCAAATTTTATGTGTAAAAT

Downstream 100 bases:

>100_bases
TGAACCCCCGATCTTATTTGTATCCGCTGTGTATTGAGAGTTATCCCGGTCAATACAGTTAATCAAAATTACTGATTCTT
GATACAAGCACACCTAATAG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 206; Mature: 206

Protein sequence:

>206_residues
MQQNRSLVRSRSPKFAWDMPSIDCLISMYEGSFQTKWCETNEAGKNTMTTLLAISITTGILSGVWGWIAISLGLLSWAGF
LGCTSYFASPTSGLKGLAESLITNMTGVFWAMVIIYGSTYVGMEIIGYVITAIVAFFMCIQAKQAWLAYIPGTFIGSCAT
FAADGNWQLVVPSLILGGVFGYLMKATGLWLHAKSAATSSLAEQVQ

Sequences:

>Translated_206_residues
MQQNRSLVRSRSPKFAWDMPSIDCLISMYEGSFQTKWCETNEAGKNTMTTLLAISITTGILSGVWGWIAISLGLLSWAGF
LGCTSYFASPTSGLKGLAESLITNMTGVFWAMVIIYGSTYVGMEIIGYVITAIVAFFMCIQAKQAWLAYIPGTFIGSCAT
FAADGNWQLVVPSLILGGVFGYLMKATGLWLHAKSAATSSLAEQVQ
>Mature_206_residues
MQQNRSLVRSRSPKFAWDMPSIDCLISMYEGSFQTKWCETNEAGKNTMTTLLAISITTGILSGVWGWIAISLGLLSWAGF
LGCTSYFASPTSGLKGLAESLITNMTGVFWAMVIIYGSTYVGMEIIGYVITAIVAFFMCIQAKQAWLAYIPGTFIGSCAT
FAADGNWQLVVPSLILGGVFGYLMKATGLWLHAKSAATSSLAEQVQ

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli yahC [H]

Homologues:

Organism=Escherichia coli, GI87081825, Length=160, Percent_Identity=65.625, Blast_Score=211, Evalue=3e-56,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009476 [H]

Pfam domain/function: PF06496 DUF1097 [H]

EC number: NA

Molecular weight: Translated: 22250; Mature: 22250

Theoretical pI: Translated: 7.82; Mature: 7.82

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
6.8 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
4.4 %Met     (Mature Protein)
6.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQQNRSLVRSRSPKFAWDMPSIDCLISMYEGSFQTKWCETNEAGKNTMTTLLAISITTGI
CCCCHHHHHCCCCCCEECCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
LSGVWGWIAISLGLLSWAGFLGCTSYFASPTSGLKGLAESLITNMTGVFWAMVIIYGSTY
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
VGMEIIGYVITAIVAFFMCIQAKQAWLAYIPGTFIGSCATFAADGNWQLVVPSLILGGVF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCEEHHHHHHHHHHH
GYLMKATGLWLHAKSAATSSLAEQVQ
HHHHHHHHHHEEEHHHHHHHHHHHCC
>Mature Secondary Structure
MQQNRSLVRSRSPKFAWDMPSIDCLISMYEGSFQTKWCETNEAGKNTMTTLLAISITTGI
CCCCHHHHHCCCCCCEECCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
LSGVWGWIAISLGLLSWAGFLGCTSYFASPTSGLKGLAESLITNMTGVFWAMVIIYGSTY
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
VGMEIIGYVITAIVAFFMCIQAKQAWLAYIPGTFIGSCATFAADGNWQLVVPSLILGGVF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCEEHHHHHHHHHHH
GYLMKATGLWLHAKSAATSSLAEQVQ
HHHHHHHHHHEEEHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]