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The map label for this gene is yeiE [H]

Identifier: 156977136

GI number: 156977136

Start: 1110320

End: 1111294

Strand: Reverse

Name: yeiE [H]

Synonym: VIBHAR_05922

Alternate gene names: 156977136

Gene position: 1111294-1110320 (Counterclockwise)

Preceding gene: 156977138

Following gene: 156977134

Centisome position: 50.42

GC content: 45.95

Gene sequence:

>975_bases
TTGCGTATCAGCGCATGTACTTTGGGGTTGCGAGAGTATGGGGAATACTCGCCAATTAGGGAGGAAACTTTGCGCTACTC
ACTTAAGCAATTAGCGGTATTTGACGCAGTTGCAGACACCGGCAGTGTAAGCCAGGCCGCGGATAAACTGGCTCTGACAC
AATCGGCGACGAGCATGTCGCTTGCTCAGTTAGAAAAAATGCTTGGCAGACCTTTATTTGAAAGGCAAGGCAAGCAAATG
GCTTTAACGCATTGGGGGATGTGGTTAAGACCAAAAGCAAAGCGTTTACTGCAAGACGCGCTACAAATTGAAATGGGTTT
TTACGAGCAACATTTGTTGAGTGGACACATTCGATTAGGCGCAAGTCAAACACCTGCAGAGCACCTAGTTCCTGACCTTA
TCAGTATCATTGATAATGATTTTCCAGAGATGCGTATCTCTCTCGGCGTACAGAGTACTCAGGCCGTCATCGATGGCGTT
TTGGATTACCGATATGATCTGGGCGTCATTGAAGGTCGCTGCGACGATAACCGTTTACACCAAGAAATTTGGTGCCGAGA
CCACCTTACTGTAGTCGCAGCGTCGCATCATCCATTTGCGCGTAACTCATCGGTGAGCTTAGCTCAACTTGAACAAGCAA
AATGGGTATTGCGAGAACATGGTTCAGGTACCCGCAAGATTTTTGATAGCTCTATTCACCATCTTATTGAAGATTTAGAC
GTGTGGCGTGAATACGAACACGTTCCAGTATTAAGAAGTTTGGTATCAAACGGGCAGTATTTGACGTGTCTGCCTTATCT
CGATGTAGAACGTTACATTGAAGCAGGGAATTTGGTGGCGTTAAATGTACCTGATCTCAAGATGGATCGAACCTTGTCGT
TTATCTGGCGAGCAGATATGGCGGAAAACCCGTTAGTTGACTGTATCAAGCGTGAAGGGTTACGCATGATGAAGGGTAAA
CCTTCTGTGTTTTAA

Upstream 100 bases:

>100_bases
TCCAGATTAAGCAGGTCAGAGCTACAGGTAAAATTGATAATATTTAGAATCCTCATCAGATAATTTGATAAGTTCTTAAA
GGCAGGTAAAATGAACCTCA

Downstream 100 bases:

>100_bases
GCGATATTCGTAATAACTTGCTGTCATTTTAGAAAAGGCTTTGCATCTCGCGGGGCCTTTTTGTCATTTACTGCTAATTT
TTCCCAACTGATTGTGATTT

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 324; Mature: 324

Protein sequence:

>324_residues
MRISACTLGLREYGEYSPIREETLRYSLKQLAVFDAVADTGSVSQAADKLALTQSATSMSLAQLEKMLGRPLFERQGKQM
ALTHWGMWLRPKAKRLLQDALQIEMGFYEQHLLSGHIRLGASQTPAEHLVPDLISIIDNDFPEMRISLGVQSTQAVIDGV
LDYRYDLGVIEGRCDDNRLHQEIWCRDHLTVVAASHHPFARNSSVSLAQLEQAKWVLREHGSGTRKIFDSSIHHLIEDLD
VWREYEHVPVLRSLVSNGQYLTCLPYLDVERYIEAGNLVALNVPDLKMDRTLSFIWRADMAENPLVDCIKREGLRMMKGK
PSVF

Sequences:

>Translated_324_residues
MRISACTLGLREYGEYSPIREETLRYSLKQLAVFDAVADTGSVSQAADKLALTQSATSMSLAQLEKMLGRPLFERQGKQM
ALTHWGMWLRPKAKRLLQDALQIEMGFYEQHLLSGHIRLGASQTPAEHLVPDLISIIDNDFPEMRISLGVQSTQAVIDGV
LDYRYDLGVIEGRCDDNRLHQEIWCRDHLTVVAASHHPFARNSSVSLAQLEQAKWVLREHGSGTRKIFDSSIHHLIEDLD
VWREYEHVPVLRSLVSNGQYLTCLPYLDVERYIEAGNLVALNVPDLKMDRTLSFIWRADMAENPLVDCIKREGLRMMKGK
PSVF
>Mature_324_residues
MRISACTLGLREYGEYSPIREETLRYSLKQLAVFDAVADTGSVSQAADKLALTQSATSMSLAQLEKMLGRPLFERQGKQM
ALTHWGMWLRPKAKRLLQDALQIEMGFYEQHLLSGHIRLGASQTPAEHLVPDLISIIDNDFPEMRISLGVQSTQAVIDGV
LDYRYDLGVIEGRCDDNRLHQEIWCRDHLTVVAASHHPFARNSSVSLAQLEQAKWVLREHGSGTRKIFDSSIHHLIEDLD
VWREYEHVPVLRSLVSNGQYLTCLPYLDVERYIEAGNLVALNVPDLKMDRTLSFIWRADMAENPLVDCIKREGLRMMKGK
PSVF

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788481, Length=288, Percent_Identity=37.1527777777778, Blast_Score=178, Evalue=5e-46,
Organism=Escherichia coli, GI1788748, Length=303, Percent_Identity=27.0627062706271, Blast_Score=95, Evalue=6e-21,
Organism=Escherichia coli, GI157672245, Length=202, Percent_Identity=28.7128712871287, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI145693105, Length=282, Percent_Identity=21.6312056737589, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1790399, Length=276, Percent_Identity=24.6376811594203, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI87082132, Length=254, Percent_Identity=22.4409448818898, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI87081904, Length=288, Percent_Identity=25.3472222222222, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1787806, Length=210, Percent_Identity=28.0952380952381, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI1787879, Length=256, Percent_Identity=23.828125, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1786401, Length=175, Percent_Identity=24.5714285714286, Blast_Score=64, Evalue=9e-12,
Organism=Escherichia coli, GI1788297, Length=241, Percent_Identity=24.0663900414938, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1788296, Length=211, Percent_Identity=26.0663507109005, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 36830; Mature: 36830

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRISACTLGLREYGEYSPIREETLRYSLKQLAVFDAVADTGSVSQAADKLALTQSATSMS
CCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
LAQLEKMLGRPLFERQGKQMALTHWGMWLRPKAKRLLQDALQIEMGFYEQHLLSGHIRLG
HHHHHHHHCCHHHHHCCCEEEHHHCCCEECHHHHHHHHHHHHHHHHHHHHHHHHCHHEEC
ASQTPAEHLVPDLISIIDNDFPEMRISLGVQSTQAVIDGVLDYRYDLGVIEGRCDDNRLH
CCCCCHHHHHHHHHHHHCCCCCHHEEECCCHHHHHHHHHHHHHHHCCCCEECCCCCHHHH
QEIWCRDHLTVVAASHHPFARNSSVSLAQLEQAKWVLREHGSGTRKIFDSSIHHLIEDLD
HHHHHCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
VWREYEHVPVLRSLVSNGQYLTCLPYLDVERYIEAGNLVALNVPDLKMDRTLSFIWRADM
HHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHCCC
AENPLVDCIKREGLRMMKGKPSVF
CCCHHHHHHHHCCCHHHCCCCCCC
>Mature Secondary Structure
MRISACTLGLREYGEYSPIREETLRYSLKQLAVFDAVADTGSVSQAADKLALTQSATSMS
CCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
LAQLEKMLGRPLFERQGKQMALTHWGMWLRPKAKRLLQDALQIEMGFYEQHLLSGHIRLG
HHHHHHHHCCHHHHHCCCEEEHHHCCCEECHHHHHHHHHHHHHHHHHHHHHHHHCHHEEC
ASQTPAEHLVPDLISIIDNDFPEMRISLGVQSTQAVIDGVLDYRYDLGVIEGRCDDNRLH
CCCCCHHHHHHHHHHHHCCCCCHHEEECCCHHHHHHHHHHHHHHHCCCCEECCCCCHHHH
QEIWCRDHLTVVAASHHPFARNSSVSLAQLEQAKWVLREHGSGTRKIFDSSIHHLIEDLD
HHHHHCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
VWREYEHVPVLRSLVSNGQYLTCLPYLDVERYIEAGNLVALNVPDLKMDRTLSFIWRADM
HHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHCCC
AENPLVDCIKREGLRMMKGKPSVF
CCCHHHHHHHHCCCHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]