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The map label for this gene is yqxC [H]

Identifier: 154248083

GI number: 154248083

Start: 4604958

End: 4605758

Strand: Direct

Name: yqxC [H]

Synonym: Xaut_4163

Alternate gene names: 154248083

Gene position: 4604958-4605758 (Clockwise)

Preceding gene: 154248080

Following gene: 154248084

Centisome position: 86.74

GC content: 70.79

Gene sequence:

>801_bases
ATGGTGAAGACGCAATCCGATCCGCAATCCGATCCCGTCCCGGCGTCTTCGTCCGGTGCGGCGGCGCGGATGCGTATCGA
CCGTCTGCTGGTGGAGCGCGGCCTGTTCGAAAGCCGCGCCCGTGCGCAGGCGGCGCTGGCGGCGGGCCTGGTGCGGGTGG
ATGGCGTCGTGGTGGCAAAGCCCTCCGCCGAGGTGGCGGCCGATGCGCGGATCGAGGCGGCGGACGTTCACGACTTTGTG
TCCCGGGGTGCGCTCAAGCTCACGGCCGGGCTCGACGCCTTCGGCATCGATCCGGCCGGCAAGGTGGCGCTGGACGTGGG
CGCTTCCACCGGCGGCTTCACCGAGGTGCTGCTGCGCCGGGGGGCGCGGAAGGTCTATGCGGTGGATGTGGGGCGCGACC
AGTTCCACCCCCGCCTCGCCGCCCGGCCGGAAGTGCACCTGATGGAGGGCACCGACATCCGCGCCCTCAGCCGCGATGCC
GCGCCCGAGCCGGTCGACCTCGTGGTGGTGGACGTGAGCTTCATCTCGCTCGCGTTGGTTTTGCCCGCGGCGCTCGCCTT
TGCCGGGAAAGAGGCGCATCTGGTGGCGCTGGTGAAACCGCAGTTCGAGGCGGGCCGCGCCAACGTCCGCAAGGGCGTGG
TGCGCGATGCCGCCGTGCATGAGGCGTGCTGCACCCGTGTGGAAGGGGAGATCGCGGCCTTGGGCTGGCGTCTCCTCGGC
CGCATTGCGTCCCCTATCGAGGGCGGCGACGGCAATCGCGAGTTTCTGGTGGGCGCAGTCCGGGAAAGTGGTGGGTTGTG
A

Upstream 100 bases:

>100_bases
CCGATGATTCCGAAAAGACAGGTGTTTGCGTCCCCCGGAGCCATCGCATATCACGGCCTCCGGCGGCCCGCGACCTCGGG
TAAGACGCCGCACGGTGAAA

Downstream 100 bases:

>100_bases
CGGAATTTCTGATTAGCCGCATGGGCGCCCAGGGCGATGGCCTCGCCCAGGGTCCCGACGGCCCGCTGTTTGCCCCCTTC
ACGCTGGCTGGCGAGCGGGT

Product: hemolysin A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 266; Mature: 266

Protein sequence:

>266_residues
MVKTQSDPQSDPVPASSSGAAARMRIDRLLVERGLFESRARAQAALAAGLVRVDGVVVAKPSAEVAADARIEAADVHDFV
SRGALKLTAGLDAFGIDPAGKVALDVGASTGGFTEVLLRRGARKVYAVDVGRDQFHPRLAARPEVHLMEGTDIRALSRDA
APEPVDLVVVDVSFISLALVLPAALAFAGKEAHLVALVKPQFEAGRANVRKGVVRDAAVHEACCTRVEGEIAALGWRLLG
RIASPIEGGDGNREFLVGAVRESGGL

Sequences:

>Translated_266_residues
MVKTQSDPQSDPVPASSSGAAARMRIDRLLVERGLFESRARAQAALAAGLVRVDGVVVAKPSAEVAADARIEAADVHDFV
SRGALKLTAGLDAFGIDPAGKVALDVGASTGGFTEVLLRRGARKVYAVDVGRDQFHPRLAARPEVHLMEGTDIRALSRDA
APEPVDLVVVDVSFISLALVLPAALAFAGKEAHLVALVKPQFEAGRANVRKGVVRDAAVHEACCTRVEGEIAALGWRLLG
RIASPIEGGDGNREFLVGAVRESGGL
>Mature_266_residues
MVKTQSDPQSDPVPASSSGAAARMRIDRLLVERGLFESRARAQAALAAGLVRVDGVVVAKPSAEVAADARIEAADVHDFV
SRGALKLTAGLDAFGIDPAGKVALDVGASTGGFTEVLLRRGARKVYAVDVGRDQFHPRLAARPEVHLMEGTDIRALSRDA
APEPVDLVVVDVSFISLALVLPAALAFAGKEAHLVALVKPQFEAGRANVRKGVVRDAAVHEACCTRVEGEIAALGWRLLG
RIASPIEGGDGNREFLVGAVRESGGL

Specific function: Unknown

COG id: COG1189

COG function: function code J; Predicted rRNA methylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S4 RNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004538
- InterPro:   IPR002877
- InterPro:   IPR002942 [H]

Pfam domain/function: PF01728 FtsJ; PF01479 S4 [H]

EC number: NA

Molecular weight: Translated: 27777; Mature: 27777

Theoretical pI: Translated: 7.06; Mature: 7.06

Prosite motif: PS50889 S4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVKTQSDPQSDPVPASSSGAAARMRIDRLLVERGLFESRARAQAALAAGLVRVDGVVVAK
CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCEEEEC
PSAEVAADARIEAADVHDFVSRGALKLTAGLDAFGIDPAGKVALDVGASTGGFTEVLLRR
CCHHHHHCCEECHHHHHHHHHCCCEEEEECCCCCCCCCCCCEEEEECCCCCHHHHHHHHC
GARKVYAVDVGRDQFHPRLAARPEVHLMEGTDIRALSRDAAPEPVDLVVVDVSFISLALV
CCCEEEEEECCCHHCCCCCCCCCCEEEECCCCCHHHCCCCCCCCEEEEEEHHHHHHHHHH
LPAALAFAGKEAHLVALVKPQFEAGRANVRKGVVRDAAVHEACCTRVEGEIAALGWRLLG
HHHHHHHCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
RIASPIEGGDGNREFLVGAVRESGGL
HHHCCCCCCCCCCEEEEEEECCCCCC
>Mature Secondary Structure
MVKTQSDPQSDPVPASSSGAAARMRIDRLLVERGLFESRARAQAALAAGLVRVDGVVVAK
CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCEEEEC
PSAEVAADARIEAADVHDFVSRGALKLTAGLDAFGIDPAGKVALDVGASTGGFTEVLLRR
CCHHHHHCCEECHHHHHHHHHCCCEEEEECCCCCCCCCCCCEEEEECCCCCHHHHHHHHC
GARKVYAVDVGRDQFHPRLAARPEVHLMEGTDIRALSRDAAPEPVDLVVVDVSFISLALV
CCCEEEEEECCCHHCCCCCCCCCCEEEECCCCCHHHCCCCCCCCEEEEEEHHHHHHHHHH
LPAALAFAGKEAHLVALVKPQFEAGRANVRKGVVRDAAVHEACCTRVEGEIAALGWRLLG
HHHHHHHCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
RIASPIEGGDGNREFLVGAVRESGGL
HHHCCCCCCCCCCEEEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969508; 9384377; 2507400 [H]