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The map label for this gene is ygcA [C]

Identifier: 154248084

GI number: 154248084

Start: 4605755

End: 4606981

Strand: Direct

Name: ygcA [C]

Synonym: Xaut_4164

Alternate gene names: 154248084

Gene position: 4605755-4606981 (Clockwise)

Preceding gene: 154248083

Following gene: 154248085

Centisome position: 86.75

GC content: 72.53

Gene sequence:

>1227_bases
GTGACGGAATTTCTGATTAGCCGCATGGGCGCCCAGGGCGATGGCCTCGCCCAGGGTCCCGACGGCCCGCTGTTTGCCCC
CTTCACGCTGGCTGGCGAGCGGGTGAGTGGGCACGTCGACAAGGATCGCCTTGCGGTCGAGGCCATCCTGGCGCCGAGCC
CCGAGCGGGCGGAGCCGTTCTGTCCCCATTTTGGAACCTGTGGGGGCTGCCTGCTCCAGCACTGGCAGCTGGAGCCCTAT
TTCGCCTGGAAGCGCGCCCTCGTGGTGGAAGCGCTGGCGCGGGAGAACATCGAGGCGGAGGTTCGCCCGCTGGTGGATGC
TCACGGGGCCGGCCGGCGGCGGGTCATCTTCCATGCCCGCCAGTATGGCGCGCGCACGGTGGTAGGGTTCGCCGAGCGCA
AGTCCCACGCCATGGTGGCGCTCGAAGCCTGCCCGGTGCTGGCGCCCAGCCTCGATCTGGCCTTGCCGGCCGCGCGGGCG
GTGGCGGCGGCCCTTGCGCCGCTGAAGAAGCCGCTGGATCTGCAGGTGGTGGCCACCGACACCGGGCTCGACATGGATGT
GCGCGGCTCCGGCCCGCTGCCGCCGTCGCTGCTCGCCGAGGTGGCGGTGCTGGCCGAGCGCTTCGGCCTTGCCCGCCTCA
CCCGCCATGGTGAACTGGTGCTCCAGCGCGTGGCGCCGATCCTGTCCATGGGCCGGGCCAAAGTGGAACTGCCGCCCGCT
GCCTTCCTCCAGGCCACCGCCGAGGGCGAGCGCGTGCTGGCAGAGGCCGTGCTCACCGCCACCCAGGGCGCCCGCAAGGT
GGCCGACCTGTTCGCCGGCGCCGGCACCTTCGCCCTGCGGCTTGCCGAGCATGCCCGCGTGTTCGCGGCTGAGAGCCATG
CCGGCGCGCTCGCGGCGCTGACGAAGGCGTCGCGCACCACCTCCGGCCTGAAGGCCGTGGACGGCGAGGCGCGGGACCTG
TTCCGCCGTCCGCTCATGGCGGCCGAGCTGGCCGCCTTCGACGCGGTGGTGATCGATCCGCCCCGCCAGGGCGCAGAGGC
GCAGGCCCGGGAGCTGGCGCAGGCGAAGCTGGCTCGCGTGGTCTATGTCTCCTGCAACGTGGCCACCTTCGCGCGGGATG
CGCGCCTCTTGGTCGCGGGCGGCTTCCGCCTCGGCGCGGTGACGCCCGTCGACCAGTTCCGCTATTCGCCCCATGTGGAG
CTGGTTGCCACCTTCGAGCGCGGCTGA

Upstream 100 bases:

>100_bases
CCTTGGGCTGGCGTCTCCTCGGCCGCATTGCGTCCCCTATCGAGGGCGGCGACGGCAATCGCGAGTTTCTGGTGGGCGCA
GTCCGGGAAAGTGGTGGGTT

Downstream 100 bases:

>100_bases
GCGGCCGGTTCTGCCGCTGCGAAAGCTAGGCGCGGTACAGGTTCTGCGGTTTAATGCGGTGCAGCATGGCGCCGCACCCG
CCGAGGCTTGATCGCCCTGC

Product: putative RNA methyltransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 408; Mature: 407

Protein sequence:

>408_residues
MTEFLISRMGAQGDGLAQGPDGPLFAPFTLAGERVSGHVDKDRLAVEAILAPSPERAEPFCPHFGTCGGCLLQHWQLEPY
FAWKRALVVEALARENIEAEVRPLVDAHGAGRRRVIFHARQYGARTVVGFAERKSHAMVALEACPVLAPSLDLALPAARA
VAAALAPLKKPLDLQVVATDTGLDMDVRGSGPLPPSLLAEVAVLAERFGLARLTRHGELVLQRVAPILSMGRAKVELPPA
AFLQATAEGERVLAEAVLTATQGARKVADLFAGAGTFALRLAEHARVFAAESHAGALAALTKASRTTSGLKAVDGEARDL
FRRPLMAAELAAFDAVVIDPPRQGAEAQARELAQAKLARVVYVSCNVATFARDARLLVAGGFRLGAVTPVDQFRYSPHVE
LVATFERG

Sequences:

>Translated_408_residues
MTEFLISRMGAQGDGLAQGPDGPLFAPFTLAGERVSGHVDKDRLAVEAILAPSPERAEPFCPHFGTCGGCLLQHWQLEPY
FAWKRALVVEALARENIEAEVRPLVDAHGAGRRRVIFHARQYGARTVVGFAERKSHAMVALEACPVLAPSLDLALPAARA
VAAALAPLKKPLDLQVVATDTGLDMDVRGSGPLPPSLLAEVAVLAERFGLARLTRHGELVLQRVAPILSMGRAKVELPPA
AFLQATAEGERVLAEAVLTATQGARKVADLFAGAGTFALRLAEHARVFAAESHAGALAALTKASRTTSGLKAVDGEARDL
FRRPLMAAELAAFDAVVIDPPRQGAEAQARELAQAKLARVVYVSCNVATFARDARLLVAGGFRLGAVTPVDQFRYSPHVE
LVATFERG
>Mature_407_residues
TEFLISRMGAQGDGLAQGPDGPLFAPFTLAGERVSGHVDKDRLAVEAILAPSPERAEPFCPHFGTCGGCLLQHWQLEPYF
AWKRALVVEALARENIEAEVRPLVDAHGAGRRRVIFHARQYGARTVVGFAERKSHAMVALEACPVLAPSLDLALPAARAV
AAALAPLKKPLDLQVVATDTGLDMDVRGSGPLPPSLLAEVAVLAERFGLARLTRHGELVLQRVAPILSMGRAKVELPPAA
FLQATAEGERVLAEAVLTATQGARKVADLFAGAGTFALRLAEHARVFAAESHAGALAALTKASRTTSGLKAVDGEARDLF
RRPLMAAELAAFDAVVIDPPRQGAEAQARELAQAKLARVVYVSCNVATFARDARLLVAGGFRLGAVTPVDQFRYSPHVEL
VATFERG

Specific function: Could Be A 23s rRNA (Uracil-5-)-Methyltransferase. [C]

COG id: COG2265

COG function: function code J; SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the methyltransferase superfamily. RNA M5U methyltransferase family [H]

Homologues:

Organism=Escherichia coli, GI1789148, Length=419, Percent_Identity=28.6396181384248, Blast_Score=144, Evalue=1e-35,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016027
- InterPro:   IPR010280 [H]

Pfam domain/function: PF05958 tRNA_U5-meth_tr [H]

EC number: NA

Molecular weight: Translated: 43337; Mature: 43206

Theoretical pI: Translated: 8.24; Mature: 8.24

Prosite motif: PS01230 TRMA_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTEFLISRMGAQGDGLAQGPDGPLFAPFTLAGERVSGHVDKDRLAVEAILAPSPERAEPF
CCHHHHHHCCCCCCCCCCCCCCCEECCCEECCCHHCCCCCHHHHHHHHHCCCCCCCCCCC
CPHFGTCGGCLLQHWQLEPYFAWKRALVVEALARENIEAEVRPLVDAHGAGRRRVIFHAR
CCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCEEEEEEHH
QYGARTVVGFAERKSHAMVALEACPVLAPSLDLALPAARAVAAALAPLKKPLDLQVVATD
HCCCEEEEEHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEC
TGLDMDVRGSGPLPPSLLAEVAVLAERFGLARLTRHGELVLQRVAPILSMGRAKVELPPA
CCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCHH
AFLQATAEGERVLAEAVLTATQGARKVADLFAGAGTFALRLAEHARVFAAESHAGALAAL
HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHEEECCCCCHHHHH
TKASRTTSGLKAVDGEARDLFRRPLMAAELAAFDAVVIDPPRQGAEAQARELAQAKLARV
HHHHHCCCCCHHCCCHHHHHHHCCHHHHHHHHHCEEEECCCCCCCHHHHHHHHHHHHHEE
VYVSCNVATFARDARLLVAGGFRLGAVTPVDQFRYSPHVELVATFERG
EEEECCHHHHHCCCEEEEECCEEECCCCCHHHHCCCCCEEEEEEECCC
>Mature Secondary Structure 
TEFLISRMGAQGDGLAQGPDGPLFAPFTLAGERVSGHVDKDRLAVEAILAPSPERAEPF
CHHHHHHCCCCCCCCCCCCCCCEECCCEECCCHHCCCCCHHHHHHHHHCCCCCCCCCCC
CPHFGTCGGCLLQHWQLEPYFAWKRALVVEALARENIEAEVRPLVDAHGAGRRRVIFHAR
CCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCEEEEEEHH
QYGARTVVGFAERKSHAMVALEACPVLAPSLDLALPAARAVAAALAPLKKPLDLQVVATD
HCCCEEEEEHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEC
TGLDMDVRGSGPLPPSLLAEVAVLAERFGLARLTRHGELVLQRVAPILSMGRAKVELPPA
CCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCHH
AFLQATAEGERVLAEAVLTATQGARKVADLFAGAGTFALRLAEHARVFAAESHAGALAAL
HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHEEECCCCCHHHHH
TKASRTTSGLKAVDGEARDLFRRPLMAAELAAFDAVVIDPPRQGAEAQARELAQAKLARV
HHHHHCCCCCHHCCCHHHHHHHCCHHHHHHHHHCEEEECCCCCCCHHHHHHHHHHHHHEE
VYVSCNVATFARDARLLVAGGFRLGAVTPVDQFRYSPHVELVATFERG
EEEECCHHHHHCCCEEEEECCEEECCCCCHHHHCCCCCEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA