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The map label for this gene is fni

Identifier: 154248055

GI number: 154248055

Start: 4575213

End: 4576244

Strand: Direct

Name: fni

Synonym: Xaut_4134

Alternate gene names: 154248055

Gene position: 4575213-4576244 (Clockwise)

Preceding gene: 154248048

Following gene: 154248060

Centisome position: 86.18

GC content: 71.61

Gene sequence:

>1032_bases
ATGGACGAAAGCGGCGCGGGTCGGCGCAAGGAAGACCATATCGACATCGTGCTCGCGGGCGGGCGTGTGGCCTCGCGCTT
GGATGCGGGCTTTGACCGGGTGCGCTTCGTCCATTGCGCGTTGCCGGAACTCGACCTCGACGCCATCGACCTTTCGACGC
GCTTTCTCGGCCGCCCCCTGAAGGCGCCCTTCCTCATCTCCGCCATGACCGGTGGGCCGGCGCGGGCGGAATCCATCAAT
GCCCATCTGGCCGAGGCCGCGCAGGCGCTGGGCATCGCGCTGGGCGTCGGCTCCCAGCGCATCGCAATCGAGGACGGTTC
GGCCGGAGGCCTCGGTGCGGACCTGCGGCGGCGGGCGCCGGACATCGCGCTGTTCGCCAATCTCGGTGCCGCCCAGCTTC
TGGCCGCGAGGGGGCTGGATGCCGCCCGCCGCGCTGTGGAGATGATCGGGGCGGATGTCCTCGTCATCCACCTCAACCCG
TTGCAGGAGGCGATCCAGCAGGGTGGCGACCGGGACTGGCGCGGCGTGTTTGACCGTATCGGCTCGCTCTGCGTCAGCCT
GTCCGCGCCGGTAGTGGTGAAGGAGGTGGGCTTCGGCCTGTCCGGCGCCGTGGCGCGGCGGCTGGCGGACTGCGGGGTTG
CGGCGCTGGACGTGGCCGGGGCAGGGGGCACCAATTGGGCGCTGGTGGAGGGCGAGCGCGGCACCGGGCGCAGCCGCGCC
GTCGCCACCGCCTTCGCCGACTGGGGCATTCCCACCGCCCAGGCGGTAGTCGAGGTGCGGGCGGCCTGCCCGGACCTTCC
CCTCATCGCCTCCGGTGGCGTGCGGCACGGGGTGGATGCAGCCAAGGCCATCCGGCTCGGCGCCGACCTCGTGGGTCAGG
CGGCGGGCACCCTCAAGGCTGCCATCACCTCAACCGAGGCGGTGGTGGAGCATTTTTCGCAGATGACGGACCAACTGCGC
ATCGCCTGCTTCGCCACCGGGGCGGCGGACCTTGACGCGCTGCGCCGTGTGCCGCTCGCCACGATGGATTGA

Upstream 100 bases:

>100_bases
GCGGCACGCCGCGCGACAGATTCTGCCGGCGTGTGGCGTCACCGCCGCGGCTTCAGGCAAAACGCGTTGTCGTTTTGAAG
GCGGGTGCCGGCGAGGGTCG

Downstream 100 bases:

>100_bases
ACATTTTCAATTGGCCCAGTGATCCATCCAGATCTTCTCGCCGATGGTGCAGGATACCCGTGGTTCCTTCGCGGCCGCGC
GCTGGACGAGGCCGGGGCCG

Product: isopentenyl pyrophosphate isomerase

Products: NA

Alternate protein names: IPP isomerase; Isopentenyl pyrophosphate isomerase

Number of amino acids: Translated: 343; Mature: 343

Protein sequence:

>343_residues
MDESGAGRRKEDHIDIVLAGGRVASRLDAGFDRVRFVHCALPELDLDAIDLSTRFLGRPLKAPFLISAMTGGPARAESIN
AHLAEAAQALGIALGVGSQRIAIEDGSAGGLGADLRRRAPDIALFANLGAAQLLAARGLDAARRAVEMIGADVLVIHLNP
LQEAIQQGGDRDWRGVFDRIGSLCVSLSAPVVVKEVGFGLSGAVARRLADCGVAALDVAGAGGTNWALVEGERGTGRSRA
VATAFADWGIPTAQAVVEVRAACPDLPLIASGGVRHGVDAAKAIRLGADLVGQAAGTLKAAITSTEAVVEHFSQMTDQLR
IACFATGAADLDALRRVPLATMD

Sequences:

>Translated_343_residues
MDESGAGRRKEDHIDIVLAGGRVASRLDAGFDRVRFVHCALPELDLDAIDLSTRFLGRPLKAPFLISAMTGGPARAESIN
AHLAEAAQALGIALGVGSQRIAIEDGSAGGLGADLRRRAPDIALFANLGAAQLLAARGLDAARRAVEMIGADVLVIHLNP
LQEAIQQGGDRDWRGVFDRIGSLCVSLSAPVVVKEVGFGLSGAVARRLADCGVAALDVAGAGGTNWALVEGERGTGRSRA
VATAFADWGIPTAQAVVEVRAACPDLPLIASGGVRHGVDAAKAIRLGADLVGQAAGTLKAAITSTEAVVEHFSQMTDQLR
IACFATGAADLDALRRVPLATMD
>Mature_343_residues
MDESGAGRRKEDHIDIVLAGGRVASRLDAGFDRVRFVHCALPELDLDAIDLSTRFLGRPLKAPFLISAMTGGPARAESIN
AHLAEAAQALGIALGVGSQRIAIEDGSAGGLGADLRRRAPDIALFANLGAAQLLAARGLDAARRAVEMIGADVLVIHLNP
LQEAIQQGGDRDWRGVFDRIGSLCVSLSAPVVVKEVGFGLSGAVARRLADCGVAALDVAGAGGTNWALVEGERGTGRSRA
VATAFADWGIPTAQAVVEVRAACPDLPLIASGGVRHGVDAAKAIRLGADLVGQAAGTLKAAITSTEAVVEHFSQMTDQLR
IACFATGAADLDALRRVPLATMD

Specific function: Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its allylic isomer, dimethylallyl diphosphate (DMAPP)

COG id: COG1304

COG function: function code C; L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the IPP isomerase type 2 family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): IDI2_XANP2 (A7IMW3)

Other databases:

- EMBL:   CP000781
- RefSeq:   YP_001419013.1
- ProteinModelPortal:   A7IMW3
- SMR:   A7IMW3
- STRING:   A7IMW3
- GeneID:   5425094
- GenomeReviews:   CP000781_GR
- KEGG:   xau:Xaut_4134
- eggNOG:   COG1304
- HOGENOM:   HBG354479
- OMA:   GSQRAAI
- ProtClustDB:   PRK05437
- BioCyc:   XAUT78245:XAUT_4134-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00354
- InterPro:   IPR013785
- InterPro:   IPR000262
- InterPro:   IPR011179
- Gene3D:   G3DSA:3.20.20.70
- PANTHER:   PTHR10578:SF3
- PIRSF:   PIRSF003314
- TIGRFAMs:   TIGR02151

Pfam domain/function: PF01070 FMN_dh

EC number: =5.3.3.2

Molecular weight: Translated: 35326; Mature: 35326

Theoretical pI: Translated: 5.98; Mature: 5.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDESGAGRRKEDHIDIVLAGGRVASRLDAGFDRVRFVHCALPELDLDAIDLSTRFLGRPL
CCCCCCCCCCCCCEEEEEECCHHHHHHHCCHHHHEEEEECCCCCCCCHHHHHHHHHCCCC
KAPFLISAMTGGPARAESINAHLAEAAQALGIALGVGSQRIAIEDGSAGGLGADLRRRAP
CCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHEECCCCEEEEECCCCCCCCHHHHHCCC
DIALFANLGAAQLLAARGLDAARRAVEMIGADVLVIHLNPLQEAIQQGGDRDWRGVFDRI
CEEEEECCCHHHHHHHCCHHHHHHHHHHHCCCEEEEEECHHHHHHHCCCCCCHHHHHHHH
GSLCVSLSAPVVVKEVGFGLSGAVARRLADCGVAALDVAGAGGTNWALVEGERGTGRSRA
HHHHHHCCCCEEEHHHCCCHHHHHHHHHHHCCEEEEEECCCCCCCEEEEECCCCCCCHHH
VATAFADWGIPTAQAVVEVRAACPDLPLIASGGVRHGVDAAKAIRLGADLVGQAAGTLKA
HHHHHHHCCCCHHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
AITSTEAVVEHFSQMTDQLRIACFATGAADLDALRRVPLATMD
HHHHHHHHHHHHHHHHHHHEEEEEECCCHHHHHHHCCCCCCCC
>Mature Secondary Structure
MDESGAGRRKEDHIDIVLAGGRVASRLDAGFDRVRFVHCALPELDLDAIDLSTRFLGRPL
CCCCCCCCCCCCCEEEEEECCHHHHHHHCCHHHHEEEEECCCCCCCCHHHHHHHHHCCCC
KAPFLISAMTGGPARAESINAHLAEAAQALGIALGVGSQRIAIEDGSAGGLGADLRRRAP
CCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHEECCCCEEEEECCCCCCCCHHHHHCCC
DIALFANLGAAQLLAARGLDAARRAVEMIGADVLVIHLNPLQEAIQQGGDRDWRGVFDRI
CEEEEECCCHHHHHHHCCHHHHHHHHHHHCCCEEEEEECHHHHHHHCCCCCCHHHHHHHH
GSLCVSLSAPVVVKEVGFGLSGAVARRLADCGVAALDVAGAGGTNWALVEGERGTGRSRA
HHHHHHCCCCEEEHHHCCCHHHHHHHHHHHCCEEEEEECCCCCCCEEEEECCCCCCCHHH
VATAFADWGIPTAQAVVEVRAACPDLPLIASGGVRHGVDAAKAIRLGADLVGQAAGTLKA
HHHHHHHCCCCHHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
AITSTEAVVEHFSQMTDQLRIACFATGAADLDALRRVPLATMD
HHHHHHHHHHHHHHHHHHHEEEEEECCCHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA