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The map label for this gene is mdcF [H]

Identifier: 154247762

GI number: 154247762

Start: 4256439

End: 4257380

Strand: Direct

Name: mdcF [H]

Synonym: Xaut_3839

Alternate gene names: 154247762

Gene position: 4256439-4257380 (Clockwise)

Preceding gene: 154247761

Following gene: 154247764

Centisome position: 80.18

GC content: 69.0

Gene sequence:

>942_bases
ATGCTGAGCACCCTCGCCGACATCGCCGTCATCGTTCTTCCGGTCTTCGGCATGGTGGCGGTGGGCTACCTGGCCGCCAA
GGTGAAGCTGGTGAGCGAGCGGGCCAGCGACGGGCTGGCCGAATTCGTCTTCAGCCTCGCGGTGCCGGCGCTGATCTTCA
AGACGCTGAGCGAATCGAGCCTGCCGGAGGCCCAGCCCTGGGGCTACTGGATCTCCTATTTCGCCGGCGCGTTCTTCGCC
TTCGGCCTCGCCATGCTGGCGGCGCGCAGATTGTTCGGCCGCAGCCCGCAGGAGGCGGTGATTCACGGCTTCGCCGCGGG
GCAGGCCAACACCGTGTTCGTGGGCGTGCCGCTCATCCTGAAAGCCTACGGGCCGGAGGGGGCGGTGCCGCTGTTCCTGC
TCATCGCCATCCACCTGCCGGTGATGCTGGTGGCTGCCACCGTGCTGATGGAGGGCAGCGCCGGCTTCTCCCGCGGCACC
GCCATGAAGCTGGTGAGGGCGCTGGCGCTCAACCCCATCCTCATCGGCATCTATGCCGGCGCGCTGGGCCGCGTGCTCGG
CATCCAGGCCACCGGCATTCCCAAGCAGATGGTAGACCTGATCGCCGCCGCCGCCACGCCCTGCGCCCTCATCTCGCTGG
GCCTGTCGCTGAAGCGCTACGGCATGACGGGGGGCGACCTTGCCCCCTCCGCGCTCATCAGCGGGCTGAAGTTGCTGGTG
CACCCGGCGGCGGTCTACGGACTCACCTTCCTGTTCCCCATGCCGGCCGTGTGGGCCGGGGTGGCGGTGCTGTTCGCCGC
CATGCCCTCGGGCATCAACGGCTATCTTCTGGCCCAGCGCTACGGCATCGGGGTGGGGGCCTCCACCAGTGCCGTGTCCA
TGTCCACCGGGCTTGCGGTGTTCACGGTGGCGCTCTGGCTCTACGTGCTCGGGGTCGGCTGA

Upstream 100 bases:

>100_bases
GGGGTGCGCGACGCGGTGCTGTCGCCTGCCGCCCGCGCCGGGGGCGCCGTTGCCTCCGAACATCGCACGGCGTCCCACCG
CGCCGCCTGACGGATCTTCC

Downstream 100 bases:

>100_bases
AGCGACAGCCGCCGCAGCACATCCTGCGGGGTGGCGCCGGCGGCGCGCAGGGCGGCAAGGCTGGTGGCGGAATTGCTCTT
GGAGAGCTTGTAGCCGCTGT

Product: auxin efflux carrier

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 313; Mature: 313

Protein sequence:

>313_residues
MLSTLADIAVIVLPVFGMVAVGYLAAKVKLVSERASDGLAEFVFSLAVPALIFKTLSESSLPEAQPWGYWISYFAGAFFA
FGLAMLAARRLFGRSPQEAVIHGFAAGQANTVFVGVPLILKAYGPEGAVPLFLLIAIHLPVMLVAATVLMEGSAGFSRGT
AMKLVRALALNPILIGIYAGALGRVLGIQATGIPKQMVDLIAAAATPCALISLGLSLKRYGMTGGDLAPSALISGLKLLV
HPAAVYGLTFLFPMPAVWAGVAVLFAAMPSGINGYLLAQRYGIGVGASTSAVSMSTGLAVFTVALWLYVLGVG

Sequences:

>Translated_313_residues
MLSTLADIAVIVLPVFGMVAVGYLAAKVKLVSERASDGLAEFVFSLAVPALIFKTLSESSLPEAQPWGYWISYFAGAFFA
FGLAMLAARRLFGRSPQEAVIHGFAAGQANTVFVGVPLILKAYGPEGAVPLFLLIAIHLPVMLVAATVLMEGSAGFSRGT
AMKLVRALALNPILIGIYAGALGRVLGIQATGIPKQMVDLIAAAATPCALISLGLSLKRYGMTGGDLAPSALISGLKLLV
HPAAVYGLTFLFPMPAVWAGVAVLFAAMPSGINGYLLAQRYGIGVGASTSAVSMSTGLAVFTVALWLYVLGVG
>Mature_313_residues
MLSTLADIAVIVLPVFGMVAVGYLAAKVKLVSERASDGLAEFVFSLAVPALIFKTLSESSLPEAQPWGYWISYFAGAFFA
FGLAMLAARRLFGRSPQEAVIHGFAAGQANTVFVGVPLILKAYGPEGAVPLFLLIAIHLPVMLVAATVLMEGSAGFSRGT
AMKLVRALALNPILIGIYAGALGRVLGIQATGIPKQMVDLIAAAATPCALISLGLSLKRYGMTGGDLAPSALISGLKLLV
HPAAVYGLTFLFPMPAVWAGVAVLFAAMPSGINGYLLAQRYGIGVGASTSAVSMSTGLAVFTVALWLYVLGVG

Specific function: Unknown

COG id: COG0679

COG function: function code R; Predicted permeases

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the auxin efflux carrier (TC 2.A.69) family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004776 [H]

Pfam domain/function: PF03547 Mem_trans [H]

EC number: NA

Molecular weight: Translated: 32304; Mature: 32304

Theoretical pI: Translated: 9.80; Mature: 9.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLSTLADIAVIVLPVFGMVAVGYLAAKVKLVSERASDGLAEFVFSLAVPALIFKTLSESS
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCC
LPEAQPWGYWISYFAGAFFAFGLAMLAARRLFGRSPQEAVIHGFAAGQANTVFVGVPLIL
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCEEEEEHHHHH
KAYGPEGAVPLFLLIAIHLPVMLVAATVLMEGSAGFSRGTAMKLVRALALNPILIGIYAG
EECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCHHHHHHHHH
ALGRVLGIQATGIPKQMVDLIAAAATPCALISLGLSLKRYGMTGGDLAPSALISGLKLLV
HHHHHHHCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH
HPAAVYGLTFLFPMPAVWAGVAVLFAAMPSGINGYLLAQRYGIGVGASTSAVSMSTGLAV
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHCCCCCCCCCHHHHHHHHHH
FTVALWLYVLGVG
HHHHHHHHHHCCC
>Mature Secondary Structure
MLSTLADIAVIVLPVFGMVAVGYLAAKVKLVSERASDGLAEFVFSLAVPALIFKTLSESS
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCC
LPEAQPWGYWISYFAGAFFAFGLAMLAARRLFGRSPQEAVIHGFAAGQANTVFVGVPLIL
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCEEEEEHHHHH
KAYGPEGAVPLFLLIAIHLPVMLVAATVLMEGSAGFSRGTAMKLVRALALNPILIGIYAG
EECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCHHHHHHHHH
ALGRVLGIQATGIPKQMVDLIAAAATPCALISLGLSLKRYGMTGGDLAPSALISGLKLLV
HHHHHHHCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH
HPAAVYGLTFLFPMPAVWAGVAVLFAAMPSGINGYLLAQRYGIGVGASTSAVSMSTGLAV
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHCCCCCCCCCHHHHHHHHHH
FTVALWLYVLGVG
HHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10858449; 11481430 [H]