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The map label for this gene is ybbO [C]

Identifier: 154247744

GI number: 154247744

Start: 4237772

End: 4238659

Strand: Direct

Name: ybbO [C]

Synonym: Xaut_3821

Alternate gene names: 154247744

Gene position: 4237772-4238659 (Clockwise)

Preceding gene: 154247741

Following gene: 154247745

Centisome position: 79.82

GC content: 75.34

Gene sequence:

>888_bases
ATGCAGGCAGCGCGCGGGGGGCCGACAGCCGATGATCCGTCCCTCGCCGGCGGACCGGTTGCCCGCGAGTCGCTCGCCCG
TGAACCGCTTGCCCGTGAACCGCTTGCCATCGTCACGGGAGGTTCGAGCGGGATCGGTCTGGCGGTCGCCCGCGAGCTCG
GGCGCAGGGGCTGCCGGGTCGCATTGCTCGCGCGCGATCCCGCCCGCCTCGCCGCCGCCGGGTCGCTGCTGGCGGGGGAG
GGGCTCGCCATCCTCACCCGGCCGCTGGACGTGCGCGACCGGGCGGCCTGCGAAGCCGTGGTGGCGGAGCTCATCGCCGG
CGCGGGTCCCCCGCTGTGGGTGGTGACGGCGGCGGGGCTCGTCGAGCCTGGGTTCTTCCTGGACCAGGACCCGGCGCGGA
TGGAGGAGCAGGTCGCCACCAACCTCCTCGGCACCTTTCACGTGGTGCGCGCGACGGCACCGGCCATGGCAGCGGCGGGG
CGGGGGCATGTGGTTCTCGTCTCCTCCGGAGCCGGGCTGTTCGGTGTCGCCGGCTATTCCGGCTATTGCGCCAGCAAGTT
CGCGGTGCGCGGGCTGGGCGAGGTGCTGCGCATGGAGCTGGCGCAGGCGGGGGTGCAGGTCACCGTCGCCGTGCCTCCGG
ACACGGACACGCCCCAGCTCGCCTACGAGGCCCGGCACCGCCCCGCCGCCATCGCCGCCTTCGCCGGGGCCGGGCGCCCC
CTGTCGGCGGAAGCGGTGGCCCGGCACATGATCCGTAGCGCCGAGCGCGGCCGCTTCCTGTCGGCGCCGGGGTGGCGGCT
TGGCGCCGTCGCCCGGCTTCAGGGCTTCGTCTCCGAGTGCTTCGCCCGGGTGCAGATGCGCCTGCTGCGCCGCGCATCCA
GGGACTGA

Upstream 100 bases:

>100_bases
AAAGAGCGTTGCGGCTATGCAACATGGTGCGTGGATGCGGCCCGGCAGGGCGCTTTCGCGCAAGGGGTTGGTCGGCGCAG
CAACGAGAGCGGAACAGGTG

Downstream 100 bases:

>100_bases
AGGGGGCAGGATCCGCCGCCGCGCCCCGGATGCTGACGTGATCGGCCCGAACCCGACGCCGATCGAGGCTCGCGAGTCGA
GGCTGGCGCAAGGCCGCGCG

Product: short-chain dehydrogenase/reductase SDR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 295; Mature: 295

Protein sequence:

>295_residues
MQAARGGPTADDPSLAGGPVARESLAREPLAREPLAIVTGGSSGIGLAVARELGRRGCRVALLARDPARLAAAGSLLAGE
GLAILTRPLDVRDRAACEAVVAELIAGAGPPLWVVTAAGLVEPGFFLDQDPARMEEQVATNLLGTFHVVRATAPAMAAAG
RGHVVLVSSGAGLFGVAGYSGYCASKFAVRGLGEVLRMELAQAGVQVTVAVPPDTDTPQLAYEARHRPAAIAAFAGAGRP
LSAEAVARHMIRSAERGRFLSAPGWRLGAVARLQGFVSECFARVQMRLLRRASRD

Sequences:

>Translated_295_residues
MQAARGGPTADDPSLAGGPVARESLAREPLAREPLAIVTGGSSGIGLAVARELGRRGCRVALLARDPARLAAAGSLLAGE
GLAILTRPLDVRDRAACEAVVAELIAGAGPPLWVVTAAGLVEPGFFLDQDPARMEEQVATNLLGTFHVVRATAPAMAAAG
RGHVVLVSSGAGLFGVAGYSGYCASKFAVRGLGEVLRMELAQAGVQVTVAVPPDTDTPQLAYEARHRPAAIAAFAGAGRP
LSAEAVARHMIRSAERGRFLSAPGWRLGAVARLQGFVSECFARVQMRLLRRASRD
>Mature_295_residues
MQAARGGPTADDPSLAGGPVARESLAREPLAREPLAIVTGGSSGIGLAVARELGRRGCRVALLARDPARLAAAGSLLAGE
GLAILTRPLDVRDRAACEAVVAELIAGAGPPLWVVTAAGLVEPGFFLDQDPARMEEQVATNLLGTFHVVRATAPAMAAAG
RGHVVLVSSGAGLFGVAGYSGYCASKFAVRGLGEVLRMELAQAGVQVTVAVPPDTDTPQLAYEARHRPAAIAAFAGAGRP
LSAEAVARHMIRSAERGRFLSAPGWRLGAVARLQGFVSECFARVQMRLLRRASRD

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI4503817, Length=243, Percent_Identity=34.9794238683128, Blast_Score=140, Evalue=1e-33,
Organism=Homo sapiens, GI40254992, Length=205, Percent_Identity=32.6829268292683, Blast_Score=79, Evalue=4e-15,
Organism=Homo sapiens, GI142976729, Length=187, Percent_Identity=29.9465240641711, Blast_Score=77, Evalue=1e-14,
Organism=Homo sapiens, GI7706318, Length=183, Percent_Identity=32.2404371584699, Blast_Score=75, Evalue=9e-14,
Organism=Homo sapiens, GI15277342, Length=200, Percent_Identity=34, Blast_Score=73, Evalue=4e-13,
Organism=Homo sapiens, GI32483357, Length=191, Percent_Identity=30.8900523560209, Blast_Score=72, Evalue=8e-13,
Organism=Homo sapiens, GI40807363, Length=206, Percent_Identity=29.126213592233, Blast_Score=71, Evalue=9e-13,
Organism=Homo sapiens, GI25282469, Length=211, Percent_Identity=27.9620853080569, Blast_Score=70, Evalue=3e-12,
Organism=Homo sapiens, GI20149619, Length=187, Percent_Identity=27.807486631016, Blast_Score=68, Evalue=1e-11,
Organism=Homo sapiens, GI126723191, Length=187, Percent_Identity=29.9465240641711, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI7657478, Length=287, Percent_Identity=28.5714285714286, Blast_Score=65, Evalue=5e-11,
Organism=Escherichia coli, GI1786701, Length=177, Percent_Identity=35.0282485875706, Blast_Score=81, Evalue=8e-17,
Organism=Escherichia coli, GI87082100, Length=192, Percent_Identity=30.7291666666667, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1787335, Length=215, Percent_Identity=28.3720930232558, Blast_Score=74, Evalue=9e-15,
Organism=Escherichia coli, GI1787820, Length=184, Percent_Identity=31.5217391304348, Blast_Score=72, Evalue=6e-14,
Organism=Caenorhabditis elegans, GI17567345, Length=197, Percent_Identity=29.9492385786802, Blast_Score=84, Evalue=7e-17,
Organism=Caenorhabditis elegans, GI71994600, Length=240, Percent_Identity=28.75, Blast_Score=72, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI25147288, Length=187, Percent_Identity=28.8770053475936, Blast_Score=68, Evalue=6e-12,
Organism=Caenorhabditis elegans, GI71994604, Length=245, Percent_Identity=28.1632653061224, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17564282, Length=187, Percent_Identity=27.807486631016, Blast_Score=66, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI193203117, Length=184, Percent_Identity=27.1739130434783, Blast_Score=64, Evalue=7e-11,
Organism=Caenorhabditis elegans, GI193203115, Length=184, Percent_Identity=27.1739130434783, Blast_Score=64, Evalue=9e-11,
Organism=Drosophila melanogaster, GI21356301, Length=286, Percent_Identity=31.1188811188811, Blast_Score=135, Evalue=4e-32,
Organism=Drosophila melanogaster, GI23397609, Length=180, Percent_Identity=34.4444444444444, Blast_Score=76, Evalue=3e-14,
Organism=Drosophila melanogaster, GI281364892, Length=191, Percent_Identity=28.7958115183246, Blast_Score=73, Evalue=2e-13,
Organism=Drosophila melanogaster, GI24639444, Length=190, Percent_Identity=32.1052631578947, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI24640492, Length=169, Percent_Identity=31.3609467455621, Blast_Score=68, Evalue=7e-12,
Organism=Drosophila melanogaster, GI24641232, Length=194, Percent_Identity=30.9278350515464, Blast_Score=67, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24640442, Length=184, Percent_Identity=28.804347826087, Blast_Score=67, Evalue=2e-11,
Organism=Drosophila melanogaster, GI221510726, Length=170, Percent_Identity=27.6470588235294, Blast_Score=65, Evalue=6e-11,
Organism=Drosophila melanogaster, GI28571387, Length=191, Percent_Identity=29.8429319371728, Blast_Score=65, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 30452; Mature: 30452

Theoretical pI: Translated: 10.23; Mature: 10.23

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQAARGGPTADDPSLAGGPVARESLAREPLAREPLAIVTGGSSGIGLAVARELGRRGCRV
CCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEE
ALLARDPARLAAAGSLLAGEGLAILTRPLDVRDRAACEAVVAELIAGAGPPLWVVTAAGL
EEEECCCHHHHHHCCHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCC
VEPGFFLDQDPARMEEQVATNLLGTFHVVRATAPAMAAAGRGHVVLVSSGAGLFGVAGYS
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCEEEECCCC
GYCASKFAVRGLGEVLRMELAQAGVQVTVAVPPDTDTPQLAYEARHRPAAIAAFAGAGRP
CHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHCCCCHHEEEECCCCCC
LSAEAVARHMIRSAERGRFLSAPGWRLGAVARLQGFVSECFARVQMRLLRRASRD
CCHHHHHHHHHHHHHCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MQAARGGPTADDPSLAGGPVARESLAREPLAREPLAIVTGGSSGIGLAVARELGRRGCRV
CCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEE
ALLARDPARLAAAGSLLAGEGLAILTRPLDVRDRAACEAVVAELIAGAGPPLWVVTAAGL
EEEECCCHHHHHHCCHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCC
VEPGFFLDQDPARMEEQVATNLLGTFHVVRATAPAMAAAGRGHVVLVSSGAGLFGVAGYS
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCEEEECCCC
GYCASKFAVRGLGEVLRMELAQAGVQVTVAVPPDTDTPQLAYEARHRPAAIAAFAGAGRP
CHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHCCCCHHEEEECCCCCC
LSAEAVARHMIRSAERGRFLSAPGWRLGAVARLQGFVSECFARVQMRLLRRASRD
CCHHHHHHHHHHHHHCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA