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The map label for this gene is ydiP [C]

Identifier: 154246623

GI number: 154246623

Start: 2972270

End: 2973235

Strand: Reverse

Name: ydiP [C]

Synonym: Xaut_2683

Alternate gene names: 154246623

Gene position: 2973235-2972270 (Counterclockwise)

Preceding gene: 154246625

Following gene: 154246622

Centisome position: 56.0

GC content: 68.12

Gene sequence:

>966_bases
GTGGCCGGCTTGCGCGGAATGGAACCTTCGCGCACTCTCTTGGATAAATCGAACCTATCGGACGTGCCAATGAGACGCGC
CGCGCCCCCGGTGCCCGCCTACGCCCTCTACGGCGAGAGCGCGGATGGCTTTCCCGACGAACTGCACGTGGAGACCATCA
CGGCACGCAGCGCCAAGTATGACTGGCGCATCCGCTCGCACCGCCACGGCGACCTCTACCAGTTCTTCTTCATCGCGGAG
GGAGGCGGTACGGCCGTCATTGATGGAACCGTCCACGCCCTCGGCCCCGGCACGGCCATCGCCATGCCGCCGCTGGTGGT
CCACGCTTTCGAATTCGCCCCGCACACCGACGGCTACGTGGCCAGCGTGCCCGCCGCGGTGCTCGACCACTGGTCATCTC
CCAAGACCCAGTGGCGCAGCCTGTTCAAGGCGCCGCTGGTGCTGGCGGTCACGCCGGCACAGGCGGGGCAGTTGCGGACC
ACGCTCGAACTCGCGCTTGTCGAATCCGGTGAACACGGCGCCAGCCGGCGCGAGGCACTTACCGCCTTCGCCGGTCTGGT
CCTGGTGTGGTTCCACCGAACTTTGGCCGCGGGTCGGCCGGACGACGACGACCTGGCATTCGCCGGCGTCCAGCTCGTGG
AGCGCTTCACCGCCCAGGTGGAGGAGGATTTTCGCCGCCATCCCAGCCTCACCGATCGCGCCCGGCGGCTCGGGGTGAGC
GTACCCCACTTGAGCCGCGTGTGCCGGCGCGTGACCGGTCGTTCGGCCCTGGGTATCGTGCAAGAGCGCCTCGCTCTCGA
AGCACGAAGGCATCTCGCCTACACGTCCATGACCGTGGCGGAGATCGCATTCGGCCTGGGCTTCGAGGATCCCGCCTATT
TCACCCGCTTCTTCACCCGGCACCTGGGCGTGAGCCCGCGGGCATACCGGGCGGATCCGTCGCGGACCCGCTCCGAAACT
GCGTGA

Upstream 100 bases:

>100_bases
AGCAATGGAGAGAGCAGGACCGCGGCTCTGGCAGGAAGGCGGCCACAGACCCATTCTCGCGCCGCGTCGCGCGCGGCGTC
GGCACTGGTGAGAATGGCGC

Downstream 100 bases:

>100_bases
ACTGTCGCAAACGTTCTTCGACCGGAGCCCGCTCACCCGCCGCGGGATCTGCCGCTGGGCCAAGCCAGGAGCACCGCGCC
AGATTCCCGCTTTACCCGCA

Product: helix-turn-helix domain-containing protein

Products: NA

Alternate protein names: Transcriptional Regulator AraC Family; Transcriptional Regulator; Helix-Turn-Helix Domain-Containing Protein; Transcriptional Regulator PobR; 4-Hydroxyphenylacetate Catabolism Regulatory Protein HpaA; Transcriptional Regulatory Protein; Regulator Of 4HPA-Hydroxylase Operon; Helix-Turn-Helix- Domain Containing Protein AraC Type; PobR Regulator; AraC-Family Transcriptional Regulator; Transcriptional Regulator AraC Family Protein; Transcriptional Regulator Arac Family; Transcriptional Regulator Pobr Arac Family Protein; AraC Family Regulatory Protein; AraC-Family Regulatory Protein; Transcriptional Regulatory Protein AraC-Type; AraC Family Transcription Regulator; AraC/XylS Family Transcription Factor; AraC-Type Regulatory Protein; AraC-Type Transcription Regulator; Bacterial Regulatory Helix-Turn-Helix Protein; Helix-Turn-Helix AraC Type; Regulator Of 4hpa-Hydroxylase Operon; Transcriptional Regulator Protein; AraC Family Transcription Regulator Protein; Helix-Turn-Helix AraC Domain Protein

Number of amino acids: Translated: 321; Mature: 320

Protein sequence:

>321_residues
MAGLRGMEPSRTLLDKSNLSDVPMRRAAPPVPAYALYGESADGFPDELHVETITARSAKYDWRIRSHRHGDLYQFFFIAE
GGGTAVIDGTVHALGPGTAIAMPPLVVHAFEFAPHTDGYVASVPAAVLDHWSSPKTQWRSLFKAPLVLAVTPAQAGQLRT
TLELALVESGEHGASRREALTAFAGLVLVWFHRTLAAGRPDDDDLAFAGVQLVERFTAQVEEDFRRHPSLTDRARRLGVS
VPHLSRVCRRVTGRSALGIVQERLALEARRHLAYTSMTVAEIAFGLGFEDPAYFTRFFTRHLGVSPRAYRADPSRTRSET
A

Sequences:

>Translated_321_residues
MAGLRGMEPSRTLLDKSNLSDVPMRRAAPPVPAYALYGESADGFPDELHVETITARSAKYDWRIRSHRHGDLYQFFFIAE
GGGTAVIDGTVHALGPGTAIAMPPLVVHAFEFAPHTDGYVASVPAAVLDHWSSPKTQWRSLFKAPLVLAVTPAQAGQLRT
TLELALVESGEHGASRREALTAFAGLVLVWFHRTLAAGRPDDDDLAFAGVQLVERFTAQVEEDFRRHPSLTDRARRLGVS
VPHLSRVCRRVTGRSALGIVQERLALEARRHLAYTSMTVAEIAFGLGFEDPAYFTRFFTRHLGVSPRAYRADPSRTRSET
A
>Mature_320_residues
AGLRGMEPSRTLLDKSNLSDVPMRRAAPPVPAYALYGESADGFPDELHVETITARSAKYDWRIRSHRHGDLYQFFFIAEG
GGTAVIDGTVHALGPGTAIAMPPLVVHAFEFAPHTDGYVASVPAAVLDHWSSPKTQWRSLFKAPLVLAVTPAQAGQLRTT
LELALVESGEHGASRREALTAFAGLVLVWFHRTLAAGRPDDDDLAFAGVQLVERFTAQVEEDFRRHPSLTDRARRLGVSV
PHLSRVCRRVTGRSALGIVQERLALEARRHLAYTSMTVAEIAFGLGFEDPAYFTRFFTRHLGVSPRAYRADPSRTRSETA

Specific function: Unknown

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 35296; Mature: 35165

Theoretical pI: Translated: 8.96; Mature: 8.96

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAGLRGMEPSRTLLDKSNLSDVPMRRAAPPVPAYALYGESADGFPDELHVETITARSAKY
CCCCCCCCCHHHHHCCCCCCCCCHHHCCCCCCCEEEECCCCCCCCCCEEEEEEECCCCCC
DWRIRSHRHGDLYQFFFIAEGGGTAVIDGTVHALGPGTAIAMPPLVVHAFEFAPHTDGYV
CEEECCCCCCCEEEEEEEECCCCEEEECCEEEECCCCCCHHCCHHHHHHHHCCCCCCCHH
ASVPAAVLDHWSSPKTQWRSLFKAPLVLAVTPAQAGQLRTTLELALVESGEHGASRREAL
HHHHHHHHHCCCCCHHHHHHHHHCCEEEEECCCCCCCHHHHEEEEEEECCCCCCHHHHHH
TAFAGLVLVWFHRTLAAGRPDDDDLAFAGVQLVERFTAQVEEDFRRHPSLTDRARRLGVS
HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCC
VPHLSRVCRRVTGRSALGIVQERLALEARRHLAYTSMTVAEIAFGLGFEDPAYFTRFFTR
CHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
HLGVSPRAYRADPSRTRSETA
HHCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
AGLRGMEPSRTLLDKSNLSDVPMRRAAPPVPAYALYGESADGFPDELHVETITARSAKY
CCCCCCCCHHHHHCCCCCCCCCHHHCCCCCCCEEEECCCCCCCCCCEEEEEEECCCCCC
DWRIRSHRHGDLYQFFFIAEGGGTAVIDGTVHALGPGTAIAMPPLVVHAFEFAPHTDGYV
CEEECCCCCCCEEEEEEEECCCCEEEECCEEEECCCCCCHHCCHHHHHHHHCCCCCCCHH
ASVPAAVLDHWSSPKTQWRSLFKAPLVLAVTPAQAGQLRTTLELALVESGEHGASRREAL
HHHHHHHHHCCCCCHHHHHHHHHCCEEEEECCCCCCCHHHHEEEEEEECCCCCCHHHHHH
TAFAGLVLVWFHRTLAAGRPDDDDLAFAGVQLVERFTAQVEEDFRRHPSLTDRARRLGVS
HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCC
VPHLSRVCRRVTGRSALGIVQERLALEARRHLAYTSMTVAEIAFGLGFEDPAYFTRFFTR
CHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
HLGVSPRAYRADPSRTRSETA
HHCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA