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The map label for this gene is rpoE [H]

Identifier: 154246614

GI number: 154246614

Start: 2963667

End: 2964185

Strand: Reverse

Name: rpoE [H]

Synonym: Xaut_2674

Alternate gene names: 154246614

Gene position: 2964185-2963667 (Counterclockwise)

Preceding gene: 154246615

Following gene: 154246613

Centisome position: 55.83

GC content: 56.65

Gene sequence:

>519_bases
TTGCTTCGACGCATTGAACAGCACCTGTTGAAGAATTGGAGCCTCCTTTGGGGCTATGCCCTGCGCCTGACGGGCGACCG
GGAATCCGCTTCAGATTTGGTGCAGACGTGTGCAGTGAAAGCGCTTGCAAGCGCCTCGCCCCCCTGCGACGAAATTGCCG
CCCGTATATATCTGTTCAAGGTTATTCGAAACGCCTGGATTGATGATTTCCGCCGCGCCAAAGTGCGGTGTGACGATTCT
GCAGTCAAACCATTGGACGGAACCGTTTGGAATTACGATGACAGGTTGATCGCTGAAATTACCGTGCGGCAGGCTGTTGC
ACAGATCGAGCCGGTCTATCGCGAAATCATCGAGATCGTTGATCTTGCCGGCTTCCGCTATGTGGAGGCCGCGGAAATAC
TCGATATTCCCCTCGGGACTGTGATGAGCCGCTTGAGCCGTGCGCGGGCGGCGCTGCTCGACCGGATTACGGCCGACAAC
ATTCGCCCCATTGCGACAGACAGACGCCATGCCAGATGA

Upstream 100 bases:

>100_bases
GCTCGGCGATGGAAGTAACCTCTGCAGGCTGCTATGATTGAGAACCGTTCACGGGTTCAGTCCGGCTTTATCGGCGCAGA
GACGACATGGTGAACAGCGA

Downstream 100 bases:

>100_bases
AAAGCCGATATCCGAGAGTCTCCCAGACACCATGACCTGGGAGATTCTGAACGCTTATGTCGATCAGGAGCTTGATCCCC
GACGAGCGGCCCTCGTCGCT

Product: ECF subfamily RNA polymerase sigma-24 factor

Products: NA

Alternate protein names: Sigma-24 [H]

Number of amino acids: Translated: 172; Mature: 172

Protein sequence:

>172_residues
MLRRIEQHLLKNWSLLWGYALRLTGDRESASDLVQTCAVKALASASPPCDEIAARIYLFKVIRNAWIDDFRRAKVRCDDS
AVKPLDGTVWNYDDRLIAEITVRQAVAQIEPVYREIIEIVDLAGFRYVEAAEILDIPLGTVMSRLSRARAALLDRITADN
IRPIATDRRHAR

Sequences:

>Translated_172_residues
MLRRIEQHLLKNWSLLWGYALRLTGDRESASDLVQTCAVKALASASPPCDEIAARIYLFKVIRNAWIDDFRRAKVRCDDS
AVKPLDGTVWNYDDRLIAEITVRQAVAQIEPVYREIIEIVDLAGFRYVEAAEILDIPLGTVMSRLSRARAALLDRITADN
IRPIATDRRHAR
>Mature_172_residues
MLRRIEQHLLKNWSLLWGYALRLTGDRESASDLVQTCAVKALASASPPCDEIAARIYLFKVIRNAWIDDFRRAKVRCDDS
AVKPLDGTVWNYDDRLIAEITVRQAVAQIEPVYREIIEIVDLAGFRYVEAAEILDIPLGTVMSRLSRARAALLDRITADN
IRPIATDRRHAR

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in heat shock and oxidative stress response; it is believed to control protein processing

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR014293
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 19589; Mature: 19589

Theoretical pI: Translated: 8.47; Mature: 8.47

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLRRIEQHLLKNWSLLWGYALRLTGDRESASDLVQTCAVKALASASPPCDEIAARIYLFK
CHHHHHHHHHHHHHHHHHHHHEECCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
VIRNAWIDDFRRAKVRCDDSAVKPLDGTVWNYDDRLIAEITVRQAVAQIEPVYREIIEIV
HHHHHHHHHHHHHHHCCCCCCCCCCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
DLAGFRYVEAAEILDIPLGTVMSRLSRARAALLDRITADNIRPIATDRRHAR
HHCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure
MLRRIEQHLLKNWSLLWGYALRLTGDRESASDLVQTCAVKALASASPPCDEIAARIYLFK
CHHHHHHHHHHHHHHHHHHHHEECCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
VIRNAWIDDFRRAKVRCDDSAVKPLDGTVWNYDDRLIAEITVRQAVAQIEPVYREIIEIV
HHHHHHHHHHHHHHHCCCCCCCCCCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
DLAGFRYVEAAEILDIPLGTVMSRLSRARAALLDRITADNIRPIATDRRHAR
HHCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12788972 [H]