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The map label for this gene is ydhM [C]

Identifier: 154246552

GI number: 154246552

Start: 2897006

End: 2897692

Strand: Reverse

Name: ydhM [C]

Synonym: Xaut_2611

Alternate gene names: 154246552

Gene position: 2897692-2897006 (Counterclockwise)

Preceding gene: 154246562

Following gene: 154246551

Centisome position: 54.58

GC content: 70.6

Gene sequence:

>687_bases
ATGCAGCAGGCGAAGACGGCGCGGGCTCCGACGGCGAAAGCCCTGACAGCAAAGGCCCAGAAAGCAAAGGCCGAGCGCGC
CAATCCCCACGCCCCGGATCCGGCTCCCGAGGCGGAACCCAACGCGCGCGAGCGCATCATCGCGGCGGCAACGCGCCTGT
TCTGCCAATACGGCATCACCGCCGTGGGCGTGGACGCGGTGGTGGCGGAGGCGGCCACCGCCAAGGCGACGCTCTACAAG
GCGTTCGGCTCAAAGGAACGGCTGGTGGAAGCGGTGCTGGAGCGCGAGGGCTCGGCCTGGCGCGACTGGTTCCTCGGCGA
ACTGCTCAAGGGCGAGGCAGCGCCGCTTGCCCGCCTGCGCCGCATCTTTCCGGTATTGCGCGAGTGGTTTGGCGACGAGC
GCTTCTTCGGCTGCCCGTTCATCAATGCCGTGGCCGAGCACGACAAGCGGGACGACCGCATGCGCCAGATCGCCCTCGCT
CACAAGAAGGTGGTGCTCGCGACCCTCTCGCGCCTCGCCGCCGAGGCCGGCGCGCGGGACCCGGAGGGCGCCGCCCACCA
GCTGGGGCTGCTGATCGACGGGGCCATCGTCGCCGCCATGATTACGCAGGACCAGAACGTCGCCGTGCTGGCGGGAGAGG
CAGCCGACCTTCTGCTGGCCCGCATGACCGCCGCCGAGGCCGCCTGA

Upstream 100 bases:

>100_bases
TGCCCTGTCCATCGACAGGATTGCACGGCATGATTCCTGCCTGTAATTGACAGACAGGTCTGTCTTTGTGCCCGCCAAAG
CGGCACGATGGTGAGAAGCG

Downstream 100 bases:

>100_bases
GGCCGGCCTTCAGGACGACTTGAGCCCGCGCTCCGGGCCGCACCCTCACGGGTTCGAGGCGGCTTTGGTCCGAGCCCGTC
CCAGGGCTCCGAATTTCCGT

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: ORF3 [H]

Number of amino acids: Translated: 228; Mature: 228

Protein sequence:

>228_residues
MQQAKTARAPTAKALTAKAQKAKAERANPHAPDPAPEAEPNARERIIAAATRLFCQYGITAVGVDAVVAEAATAKATLYK
AFGSKERLVEAVLEREGSAWRDWFLGELLKGEAAPLARLRRIFPVLREWFGDERFFGCPFINAVAEHDKRDDRMRQIALA
HKKVVLATLSRLAAEAGARDPEGAAHQLGLLIDGAIVAAMITQDQNVAVLAGEAADLLLARMTAAEAA

Sequences:

>Translated_228_residues
MQQAKTARAPTAKALTAKAQKAKAERANPHAPDPAPEAEPNARERIIAAATRLFCQYGITAVGVDAVVAEAATAKATLYK
AFGSKERLVEAVLEREGSAWRDWFLGELLKGEAAPLARLRRIFPVLREWFGDERFFGCPFINAVAEHDKRDDRMRQIALA
HKKVVLATLSRLAAEAGARDPEGAAHQLGLLIDGAIVAAMITQDQNVAVLAGEAADLLLARMTAAEAA
>Mature_228_residues
MQQAKTARAPTAKALTAKAQKAKAERANPHAPDPAPEAEPNARERIIAAATRLFCQYGITAVGVDAVVAEAATAKATLYK
AFGSKERLVEAVLEREGSAWRDWFLGELLKGEAAPLARLRRIFPVLREWFGDERFFGCPFINAVAEHDKRDDRMRQIALA
HKKVVLATLSRLAAEAGARDPEGAAHQLGLLIDGAIVAAMITQDQNVAVLAGEAADLLLARMTAAEAA

Specific function: Unknown

COG id: COG1309

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 24486; Mature: 24486

Theoretical pI: Translated: 8.73; Mature: 8.73

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQQAKTARAPTAKALTAKAQKAKAERANPHAPDPAPEAEPNARERIIAAATRLFCQYGIT
CCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCH
AVGVDAVVAEAATAKATLYKAFGSKERLVEAVLEREGSAWRDWFLGELLKGEAAPLARLR
HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHH
RIFPVLREWFGDERFFGCPFINAVAEHDKRDDRMRQIALAHKKVVLATLSRLAAEAGARD
HHHHHHHHHHCCCCEECCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
PEGAAHQLGLLIDGAIVAAMITQDQNVAVLAGEAADLLLARMTAAEAA
CCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHCC
>Mature Secondary Structure
MQQAKTARAPTAKALTAKAQKAKAERANPHAPDPAPEAEPNARERIIAAATRLFCQYGIT
CCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCH
AVGVDAVVAEAATAKATLYKAFGSKERLVEAVLEREGSAWRDWFLGELLKGEAAPLARLR
HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHH
RIFPVLREWFGDERFFGCPFINAVAEHDKRDDRMRQIALAHKKVVLATLSRLAAEAGARD
HHHHHHHHHHCCCCEECCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
PEGAAHQLGLLIDGAIVAAMITQDQNVAVLAGEAADLLLARMTAAEAA
CCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1339371 [H]