Click here to switch to the map view.

The map label for this gene is 154246103

Identifier: 154246103

GI number: 154246103

Start: 2421545

End: 2422276

Strand: Reverse

Name: 154246103

Synonym: Xaut_2160

Alternate gene names: NA

Gene position: 2422276-2421545 (Counterclockwise)

Preceding gene: 154246104

Following gene: 154246102

Centisome position: 45.63

GC content: 68.85

Gene sequence:

>732_bases
ATGTTCCTCCCCATCGCCGACGCCAACCCGCTGGAGCATGTGCGGCACGCCTACGTCACCTGGGCGCTGCTGGCGCTCAA
CCTGTTCGTGTTCCTGGCGCTCCAGCACGGCGCCTTCGGCGCGGTGAGCGAGGCCGGCACCCTCGCCTTCGGCACCATTC
CGGCGGTGGTGACGGGCGAGGCGGTGCTGCCGGAAGGCTATGCGCGCATTCCCGCGCCCTTCAGCCTCGTCACCTACATG
TTCCTGCACGGCGGCTGGCTGCACCTCATCGGCAACATGACGTTCCTGTTCGTGTTCGGCGACAATGTGGAAGACGCGCT
TGGCCACGTCCGCTTCCTCGCCTTCTACCTGTTGTGCGGCGCCCTGGCGGCGAGCGCCCACGTGCTGGCGAACCCCGCCT
CGGAAGCGCCTCTGGTGGGAGCGTCGGGCGCGGTGGCAGGGGTGATCGCCGCCTATCTGGTGCTGCACCCCAATATCCGC
CTGTGGGCGCTGGTGCTCATGAAGATCCCGCTGCGCGTGCCGGCCTATTGGGCCATCGGCGCGTGGTTCACCCTCCAGAT
CTGGCAGATCCTGGTGAGCCAAGACCAGGACACCGCATGGTGGGCCCATGTGGGCGGCTTCGTTGCCGGAGCGCTGCTGG
TGACCGTGATGCGCCGGCCGGGGGTGGCGCTGCTGGATACCGACCCCTCCGGAGTGCCGAGCCGGCAGGCGCCGCGCAAG
AACGAGCCGTAG

Upstream 100 bases:

>100_bases
GGCGCATTTTCTTCGCGCGGTCCGCTGCCCCCTCCACCCGAAAATACTCTAGGCTTCCGGCCATGGGCGCGCACAGGGCG
CCCGTGGAAGACCCTGGACC

Downstream 100 bases:

>100_bases
AAGATCTGCAAGTCCAACTTTAGCAGACCTTGAAAGCGCGAGCGTTGACACACTTTCTGGCCCCTCCTACGTTGCCGGCC
CGCACAAAATGCTGCAATGC

Product: rhomboid family protein

Products: NA

Alternate protein names: Peptidase; Integral Membrane Protein; Rhomboid-Like Protein; S54 Family Peptidase; Peptidase Protein; Rhomboid Family Transmembrane Protein; LOW QUALITY PROTEIN Integral Membrane Protein; Transmembrane Rhomboid Family Protein; Subfamily; Rhomboid Serine Protease; Membrane Associated Serine Protease; Rhomboid Family Membrane Protein; Integral Membrane Rhomboid Family Protein; Regulatory Proteins IclR

Number of amino acids: Translated: 243; Mature: 243

Protein sequence:

>243_residues
MFLPIADANPLEHVRHAYVTWALLALNLFVFLALQHGAFGAVSEAGTLAFGTIPAVVTGEAVLPEGYARIPAPFSLVTYM
FLHGGWLHLIGNMTFLFVFGDNVEDALGHVRFLAFYLLCGALAASAHVLANPASEAPLVGASGAVAGVIAAYLVLHPNIR
LWALVLMKIPLRVPAYWAIGAWFTLQIWQILVSQDQDTAWWAHVGGFVAGALLVTVMRRPGVALLDTDPSGVPSRQAPRK
NEP

Sequences:

>Translated_243_residues
MFLPIADANPLEHVRHAYVTWALLALNLFVFLALQHGAFGAVSEAGTLAFGTIPAVVTGEAVLPEGYARIPAPFSLVTYM
FLHGGWLHLIGNMTFLFVFGDNVEDALGHVRFLAFYLLCGALAASAHVLANPASEAPLVGASGAVAGVIAAYLVLHPNIR
LWALVLMKIPLRVPAYWAIGAWFTLQIWQILVSQDQDTAWWAHVGGFVAGALLVTVMRRPGVALLDTDPSGVPSRQAPRK
NEP
>Mature_243_residues
MFLPIADANPLEHVRHAYVTWALLALNLFVFLALQHGAFGAVSEAGTLAFGTIPAVVTGEAVLPEGYARIPAPFSLVTYM
FLHGGWLHLIGNMTFLFVFGDNVEDALGHVRFLAFYLLCGALAASAHVLANPASEAPLVGASGAVAGVIAAYLVLHPNIR
LWALVLMKIPLRVPAYWAIGAWFTLQIWQILVSQDQDTAWWAHVGGFVAGALLVTVMRRPGVALLDTDPSGVPSRQAPRK
NEP

Specific function: Unknown

COG id: COG0705

COG function: function code R; Uncharacterized membrane protein (homolog of Drosophila rhomboid)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 26098; Mature: 26098

Theoretical pI: Translated: 6.80; Mature: 6.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFLPIADANPLEHVRHAYVTWALLALNLFVFLALQHGAFGAVSEAGTLAFGTIPAVVTGE
CEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCEEECCCCHHEECC
AVLPEGYARIPAPFSLVTYMFLHGGWLHLIGNMTFLFVFGDNVEDALGHVRFLAFYLLCG
EECCCCCCCCCCHHHHHHHHHHHCCHHHHHCCEEEEEEECCCHHHHHHHHHHHHHHHHHH
ALAASAHVLANPASEAPLVGASGAVAGVIAAYLVLHPNIRLWALVLMKIPLRVPAYWAIG
HHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHH
AWFTLQIWQILVSQDQDTAWWAHVGGFVAGALLVTVMRRPGVALLDTDPSGVPSRQAPRK
HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCC
NEP
CCC
>Mature Secondary Structure
MFLPIADANPLEHVRHAYVTWALLALNLFVFLALQHGAFGAVSEAGTLAFGTIPAVVTGE
CEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCEEECCCCHHEECC
AVLPEGYARIPAPFSLVTYMFLHGGWLHLIGNMTFLFVFGDNVEDALGHVRFLAFYLLCG
EECCCCCCCCCCHHHHHHHHHHHCCHHHHHCCEEEEEEECCCHHHHHHHHHHHHHHHHHH
ALAASAHVLANPASEAPLVGASGAVAGVIAAYLVLHPNIRLWALVLMKIPLRVPAYWAIG
HHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHH
AWFTLQIWQILVSQDQDTAWWAHVGGFVAGALLVTVMRRPGVALLDTDPSGVPSRQAPRK
HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCC
NEP
CCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA