| Definition | Xanthobacter autotrophicus Py2 chromosome, complete genome. |
|---|---|
| Accession | NC_009720 |
| Length | 5,308,934 |
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The map label for this gene is hss [H]
Identifier: 154246081
GI number: 154246081
Start: 2400530
End: 2401960
Strand: Direct
Name: hss [H]
Synonym: Xaut_2138
Alternate gene names: 154246081
Gene position: 2400530-2401960 (Clockwise)
Preceding gene: 154246080
Following gene: 154246084
Centisome position: 45.22
GC content: 66.95
Gene sequence:
>1431_bases ATGAGCGACTGGCCGGTCCACGCGAAGATCGACGGCCCCATCGTGATGATCGGGTTCGGTTCCATCGGCCGCGGCACCCT GCCGCTGATCGAGCGCCACTTCGATTTCGATCTCTCCCGCATGGTGGTCATCGACCCCGTGGCGGACCACAAGACGCTGC TCGACGCCCGCGGTATCCGCTTCATCCAGTCCGAAGTCACCGCCGAGAATTACCGTGAGCTGCTCACCCCGCTCCTCACC AACGGTGGCGGCCAGGGCTTCTGCGTGAATCTCTCGGTGGACGTGTCGTCCGTGGCGGTGATGGAGCTCACCCGCGAGAT CGGCGCGCTTTACGTGGACACCGTCATCGAGCCCTGGAAGGGCTTCTATTTCGACGAGACCATGGATAACGCCGCGCGCA CCAACTACGCCCTGCGCGAGAGCCTGCTGGCCGCGCGCCGGCGCAATCCCGGCGGCACCACGGCGGTGTCCACCTGTGGC GCCAACCCGGGCATGGTCTCCTGGTTCGTGAAGCAGGCGCTGCTCAACATCGCCGCCGACACCGGCCTCGACCGGCCCGA GCCGGCGAACCGCGAGGAATGGGCGCAGCTCGCCCGCGCGCTCGGGGTGAAGGGCATCCATATCGCCGAGCGCGACACCC AGCGCGCCCGCGAGCCCAAGGTCATGGGCGAGTTCTGGAACACCTGGTCGGTCGAAGGCTTCGTCTCCGAAGGCCTCCAG CCTGCGGAGCTCGGCTGGGGCACCCATGAGAAGTCCCTGCCGCCGGACGGGCGCACCCACGAGGCCGGCTGCGGCGCAGC CATTTACCTGCTCTCGCCCGGTGCCGCCACCCGCGTGCGCTCGTGGACCCCGACGCCGAAGGCCCAGTACGGCTTCCTCG TCACCCACAACGAGAGCATCTCCATCGCCGACTACCTGACGGTGCGCGACGGCGACACCGTGCTCTACCGGCCCACCTGT CACTATGCCTACCACCCGGCGAACGACGCGGTGCTGTCGCTGCACGAGATGTTCGGCAATGGCGGCCACTTCCAGGAGAA GTGGAAGATCCTCGACGAGCATGAGATCGTGGACGGCATCGACGAACTGGGCGTGCTCCTCTACGGCCACGCCAAGAACG CTTACTGGTTCGGCTCCCAGCTCTCCATCGAGCAGACGCGCGAGCTTGCGCCCTACCAGAACGCCACCGGCCTGCAGGTG ACCTCTGCCGTGCTCGCCGGCATGGTGTGGGCGCTGGAGAACCCCAACGCGGGCATCGTGGAAGCCGACGAGATGGACTT CCGCCGCTGCCTTGAGGTGCAACTGCCCTATCTCGGTCCGGTGATCGGCACCTACACGGACTGGACGCCCCTCACCGGCC GCCAGAAACTGTTCCCCGAGGACCTGGACCTTGAGGACCCCTGGCAGTTCAAGAACGTCATCGTGCGCTGA
Upstream 100 bases:
>100_bases CGGTTTCCGCCCGGCCGTCGTGCGTCCCGGGAATCTGTGATCGAGCGGCGCCCGGTTCCCGTGACGGGAGGCGCCGCCCC CCGACGAGGAGTGTAGCGCC
Downstream 100 bases:
>100_bases GGGGATGGGCGGCAGTCGCCGCCCGGACGCGCACTGGTGTCCAAAATGAAAAAGCCCCGGCCTTGGCCGGGGCTTTTCTG CATCTGGCTACGGTGCAGGC
Product: homospermidine synthase
Products: NA
Alternate protein names: HSS [H]
Number of amino acids: Translated: 476; Mature: 475
Protein sequence:
>476_residues MSDWPVHAKIDGPIVMIGFGSIGRGTLPLIERHFDFDLSRMVVIDPVADHKTLLDARGIRFIQSEVTAENYRELLTPLLT NGGGQGFCVNLSVDVSSVAVMELTREIGALYVDTVIEPWKGFYFDETMDNAARTNYALRESLLAARRRNPGGTTAVSTCG ANPGMVSWFVKQALLNIAADTGLDRPEPANREEWAQLARALGVKGIHIAERDTQRAREPKVMGEFWNTWSVEGFVSEGLQ PAELGWGTHEKSLPPDGRTHEAGCGAAIYLLSPGAATRVRSWTPTPKAQYGFLVTHNESISIADYLTVRDGDTVLYRPTC HYAYHPANDAVLSLHEMFGNGGHFQEKWKILDEHEIVDGIDELGVLLYGHAKNAYWFGSQLSIEQTRELAPYQNATGLQV TSAVLAGMVWALENPNAGIVEADEMDFRRCLEVQLPYLGPVIGTYTDWTPLTGRQKLFPEDLDLEDPWQFKNVIVR
Sequences:
>Translated_476_residues MSDWPVHAKIDGPIVMIGFGSIGRGTLPLIERHFDFDLSRMVVIDPVADHKTLLDARGIRFIQSEVTAENYRELLTPLLT NGGGQGFCVNLSVDVSSVAVMELTREIGALYVDTVIEPWKGFYFDETMDNAARTNYALRESLLAARRRNPGGTTAVSTCG ANPGMVSWFVKQALLNIAADTGLDRPEPANREEWAQLARALGVKGIHIAERDTQRAREPKVMGEFWNTWSVEGFVSEGLQ PAELGWGTHEKSLPPDGRTHEAGCGAAIYLLSPGAATRVRSWTPTPKAQYGFLVTHNESISIADYLTVRDGDTVLYRPTC HYAYHPANDAVLSLHEMFGNGGHFQEKWKILDEHEIVDGIDELGVLLYGHAKNAYWFGSQLSIEQTRELAPYQNATGLQV TSAVLAGMVWALENPNAGIVEADEMDFRRCLEVQLPYLGPVIGTYTDWTPLTGRQKLFPEDLDLEDPWQFKNVIVR >Mature_475_residues SDWPVHAKIDGPIVMIGFGSIGRGTLPLIERHFDFDLSRMVVIDPVADHKTLLDARGIRFIQSEVTAENYRELLTPLLTN GGGQGFCVNLSVDVSSVAVMELTREIGALYVDTVIEPWKGFYFDETMDNAARTNYALRESLLAARRRNPGGTTAVSTCGA NPGMVSWFVKQALLNIAADTGLDRPEPANREEWAQLARALGVKGIHIAERDTQRAREPKVMGEFWNTWSVEGFVSEGLQP AELGWGTHEKSLPPDGRTHEAGCGAAIYLLSPGAATRVRSWTPTPKAQYGFLVTHNESISIADYLTVRDGDTVLYRPTCH YAYHPANDAVLSLHEMFGNGGHFQEKWKILDEHEIVDGIDELGVLLYGHAKNAYWFGSQLSIEQTRELAPYQNATGLQVT SAVLAGMVWALENPNAGIVEADEMDFRRCLEVQLPYLGPVIGTYTDWTPLTGRQKLFPEDLDLEDPWQFKNVIVR
Specific function: Involved in the NAD(+)-dependent synthesis of the polyamine homospermidine from putrescine [H]
COG id: COG5310
COG function: function code Q; Homospermidine synthase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR023181 - InterPro: IPR016040 - InterPro: IPR005097 [H]
Pfam domain/function: PF03435 Saccharop_dh [H]
EC number: =2.5.1.44 [H]
Molecular weight: Translated: 52831; Mature: 52700
Theoretical pI: Translated: 4.83; Mature: 4.83
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSDWPVHAKIDGPIVMIGFGSIGRGTLPLIERHFDFDLSRMVVIDPVADHKTLLDARGIR CCCCCEEEEECCCEEEEECCCCCCCCHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHCHH FIQSEVTAENYRELLTPLLTNGGGQGFCVNLSVDVSSVAVMELTREIGALYVDTVIEPWK HHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHC GFYFDETMDNAARTNYALRESLLAARRRNPGGTTAVSTCGANPGMVSWFVKQALLNIAAD CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHH TGLDRPEPANREEWAQLARALGVKGIHIAERDTQRAREPKVMGEFWNTWSVEGFVSEGLQ CCCCCCCCCCHHHHHHHHHHHCCCCEEEECCHHHHHCCCCHHHHHCCCCCCCHHHHCCCC PAELGWGTHEKSLPPDGRTHEAGCGAAIYLLSPGAATRVRSWTPTPKAQYGFLVTHNESI HHHCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCEEEEECCCE SIADYLTVRDGDTVLYRPTCHYAYHPANDAVLSLHEMFGNGGHFQEKWKILDEHEIVDGI EEEEEEEEECCCEEEECCCCCEEECCCCHHHHHHHHHHCCCCCCHHHHHHHCHHHHHHCH DELGVLLYGHAKNAYWFGSQLSIEQTRELAPYQNATGLQVTSAVLAGMVWALENPNAGIV HHCCEEEEECCCCCEEECCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHEEEECCCCCEE EADEMDFRRCLEVQLPYLGPVIGTYTDWTPLTGRQKLFPEDLDLEDPWQFKNVIVR ECCHHHHHHHHHHCCCCCCCHHCCCCCCCCCCCCHHCCCCCCCCCCCHHHHHHHCC >Mature Secondary Structure SDWPVHAKIDGPIVMIGFGSIGRGTLPLIERHFDFDLSRMVVIDPVADHKTLLDARGIR CCCCEEEEECCCEEEEECCCCCCCCHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHCHH FIQSEVTAENYRELLTPLLTNGGGQGFCVNLSVDVSSVAVMELTREIGALYVDTVIEPWK HHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHC GFYFDETMDNAARTNYALRESLLAARRRNPGGTTAVSTCGANPGMVSWFVKQALLNIAAD CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHH TGLDRPEPANREEWAQLARALGVKGIHIAERDTQRAREPKVMGEFWNTWSVEGFVSEGLQ CCCCCCCCCCHHHHHHHHHHHCCCCEEEECCHHHHHCCCCHHHHHCCCCCCCHHHHCCCC PAELGWGTHEKSLPPDGRTHEAGCGAAIYLLSPGAATRVRSWTPTPKAQYGFLVTHNESI HHHCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCEEEEECCCE SIADYLTVRDGDTVLYRPTCHYAYHPANDAVLSLHEMFGNGGHFQEKWKILDEHEIVDGI EEEEEEEEECCCEEEECCCCCEEECCCCHHHHHHHHHHCCCCCCHHHHHHHCHHHHHHCH DELGVLLYGHAKNAYWFGSQLSIEQTRELAPYQNATGLQVTSAVLAGMVWALENPNAGIV HHCCEEEEECCCCCEEECCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHEEEECCCCCEE EADEMDFRRCLEVQLPYLGPVIGTYTDWTPLTGRQKLFPEDLDLEDPWQFKNVIVR ECCHHHHHHHHHHCCCCCCCHHCCCCCCCCCCCCHHCCCCCCCCCCCHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8841401 [H]