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The map label for this gene is atpD [H]

Identifier: 154246023

GI number: 154246023

Start: 2340353

End: 2341789

Strand: Direct

Name: atpD [H]

Synonym: Xaut_2080

Alternate gene names: 154246023

Gene position: 2340353-2341789 (Clockwise)

Preceding gene: 154246022

Following gene: 154246025

Centisome position: 44.08

GC content: 67.22

Gene sequence:

>1437_bases
ATGGCGAACAAGGTCGGACGCATCACCCAGGTCATCGGCGCCGTCGTGGACGTGCAGTTCGACGGCCATCTGCCGGAAAT
CCTCAACGCGCTGGAGACCACCAACCAGGGCAACCGGCTGGTGCTCGAAGTGGCGCAGCACCTCGGTGAGAGCACCGTGC
GCTGTATCGCCATGGACGCTACCGAAGGTCTGGTGCGTGGCCTCGAGGTCACCGATACCGGCGCGCCGATCCAGGTGCCG
GTGGGTGCCGGCACCCTCGGCCGCATCATGAACGTCATCGGCGAGCCGGTGGACGAGCTTGGCCCGATCGAGGCGGAAGC
CACCCGCGGCATCCACCAGCCGGCCCCCTCCTATGCGGAGCAGGCCACGGAAGCCGAGATCCTCGTCACCGGCATCAAGG
TGGTGGACCTCCTCGCCCCCTACGCCAAGGGCGGCAAGGTGGGCCTGTTCGGCGGCGCAGGCGTGGGCAAGACCGTGCTC
ATCATGGAGCTGATCAACAACGTGGCGAAGGCGCACGGCGGCTATTCCGTGTTCGCCGGCGTGGGTGAGCGCACCCGCGA
GGGCAACGACCTCTACCACGAGATGATCGAGTCCAACGTGAACAAGGACCCGCACGAGAACGGTGGTTCCGCCGCCGGTT
CCAAGTGCGCCCTGGTGTACGGCCAGATGAACGAGCCTCCGGGCGCCCGCGCCCGCGTGGCGCTGACCGGCCTCACCGTC
GCCGAGCACTTCCGCGACCAGGGCCAGGACGTGCTGTTCTTCGTGGACAACATCTTCCGCTTCACCCAGGCCGGCTCGGA
AGTGTCGGCTCTGCTCGGCCGCATTCCCTCGGCGGTGGGCTACCAGCCGACGCTGGCCACCGACATGGGCGCGCTCCAGG
AGCGCATCACCACCACCACCAAGGGCTCGATCACCTCGGTGCAGGCCATCTACGTGCCGGCCGACGACCTGACCGACCCG
GCGCCTGCCGCCTCCTTCGCCCATCTGGACGCCACCACCGTGCTGTCGCGCTCCATCGCGGAAAAGGGCATCTACCCGGC
GGTGGATCCGCTGGACTCCACCTCGCGCATGCTCTCCCCCGCCATCCTCGGCGACGAGCACTACAACACCGCGCGTCAGG
TCCAGCAGACCCTGCAGCGCTACAAGGCTCTCCAGGACATCATCGCCATCCTGGGCATGGACGAGCTCAGCGAAGAGGAC
AAGATCACGGTCGCCCGCGCCCGCAAGATCGAGCGCTTCCTCTCGCAGCCCTTCCACGTGGCGGAAGTGTTCACCGGCTC
CCCGGGCAAGCTCGTGGACCTGAAGGACACCATCGCCGGCTTCAAGGGCCTGGTGGAAGGCAAGTACGACTACCTGCCCG
AGCAGGCCTTCTACATGGTCGGCTCCATGGAAGAAGCCATCGAGAAGGGCAAGAAGCTCGCGGCCGAGGCGGCCTGA

Upstream 100 bases:

>100_bases
GATGATCACGAAGGAACTCATCGAGATCATCTCCGGCGCCGAGGCCCTCTGAGGCCCGGGACCAAGGCTCGGTCGGAAAT
AGGACACGAGGACGACGAAA

Downstream 100 bases:

>100_bases
GCGACCGCAAGGCAAAGGCGTTCCGGTCATCCCTCGCAAGGTGATCGGAATGCGTGATTTTCCTGCTCCGCTTTGAGGCG
AATTTGCCGCGCAGGGTGTT

Product: F0F1 ATP synthase subunit beta

Products: NA

Alternate protein names: ATP synthase F1 sector subunit beta; F-ATPase subunit beta [H]

Number of amino acids: Translated: 478; Mature: 477

Protein sequence:

>478_residues
MANKVGRITQVIGAVVDVQFDGHLPEILNALETTNQGNRLVLEVAQHLGESTVRCIAMDATEGLVRGLEVTDTGAPIQVP
VGAGTLGRIMNVIGEPVDELGPIEAEATRGIHQPAPSYAEQATEAEILVTGIKVVDLLAPYAKGGKVGLFGGAGVGKTVL
IMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESNVNKDPHENGGSAAGSKCALVYGQMNEPPGARARVALTGLTV
AEHFRDQGQDVLFFVDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGALQERITTTTKGSITSVQAIYVPADDLTDP
APAASFAHLDATTVLSRSIAEKGIYPAVDPLDSTSRMLSPAILGDEHYNTARQVQQTLQRYKALQDIIAILGMDELSEED
KITVARARKIERFLSQPFHVAEVFTGSPGKLVDLKDTIAGFKGLVEGKYDYLPEQAFYMVGSMEEAIEKGKKLAAEAA

Sequences:

>Translated_478_residues
MANKVGRITQVIGAVVDVQFDGHLPEILNALETTNQGNRLVLEVAQHLGESTVRCIAMDATEGLVRGLEVTDTGAPIQVP
VGAGTLGRIMNVIGEPVDELGPIEAEATRGIHQPAPSYAEQATEAEILVTGIKVVDLLAPYAKGGKVGLFGGAGVGKTVL
IMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESNVNKDPHENGGSAAGSKCALVYGQMNEPPGARARVALTGLTV
AEHFRDQGQDVLFFVDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGALQERITTTTKGSITSVQAIYVPADDLTDP
APAASFAHLDATTVLSRSIAEKGIYPAVDPLDSTSRMLSPAILGDEHYNTARQVQQTLQRYKALQDIIAILGMDELSEED
KITVARARKIERFLSQPFHVAEVFTGSPGKLVDLKDTIAGFKGLVEGKYDYLPEQAFYMVGSMEEAIEKGKKLAAEAA
>Mature_477_residues
ANKVGRITQVIGAVVDVQFDGHLPEILNALETTNQGNRLVLEVAQHLGESTVRCIAMDATEGLVRGLEVTDTGAPIQVPV
GAGTLGRIMNVIGEPVDELGPIEAEATRGIHQPAPSYAEQATEAEILVTGIKVVDLLAPYAKGGKVGLFGGAGVGKTVLI
MELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESNVNKDPHENGGSAAGSKCALVYGQMNEPPGARARVALTGLTVA
EHFRDQGQDVLFFVDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGALQERITTTTKGSITSVQAIYVPADDLTDPA
PAASFAHLDATTVLSRSIAEKGIYPAVDPLDSTSRMLSPAILGDEHYNTARQVQQTLQRYKALQDIIAILGMDELSEEDK
ITVARARKIERFLSQPFHVAEVFTGSPGKLVDLKDTIAGFKGLVEGKYDYLPEQAFYMVGSMEEAIEKGKKLAAEAA

Specific function: Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits [H]

COG id: COG0055

COG function: function code C; F0F1-type ATP synthase, beta subunit

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATPase alpha/beta chains family [H]

Homologues:

Organism=Homo sapiens, GI32189394, Length=474, Percent_Identity=78.6919831223629, Blast_Score=736, Evalue=0.0,
Organism=Homo sapiens, GI19913424, Length=305, Percent_Identity=28.1967213114754, Blast_Score=115, Evalue=6e-26,
Organism=Homo sapiens, GI19913426, Length=373, Percent_Identity=26.5415549597855, Blast_Score=100, Evalue=4e-21,
Organism=Homo sapiens, GI19913428, Length=368, Percent_Identity=25.8152173913043, Blast_Score=97, Evalue=5e-20,
Organism=Homo sapiens, GI50345984, Length=303, Percent_Identity=27.3927392739274, Blast_Score=94, Evalue=3e-19,
Organism=Homo sapiens, GI4757810, Length=303, Percent_Identity=27.3927392739274, Blast_Score=94, Evalue=3e-19,
Organism=Escherichia coli, GI1790170, Length=469, Percent_Identity=70.362473347548, Blast_Score=661, Evalue=0.0,
Organism=Escherichia coli, GI1788251, Length=315, Percent_Identity=29.5238095238095, Blast_Score=136, Evalue=4e-33,
Organism=Escherichia coli, GI1790172, Length=336, Percent_Identity=27.0833333333333, Blast_Score=108, Evalue=7e-25,
Organism=Caenorhabditis elegans, GI25144756, Length=476, Percent_Identity=73.9495798319328, Blast_Score=709, Evalue=0.0,
Organism=Caenorhabditis elegans, GI17565854, Length=319, Percent_Identity=27.8996865203762, Blast_Score=117, Evalue=1e-26,
Organism=Caenorhabditis elegans, GI17510931, Length=357, Percent_Identity=25.4901960784314, Blast_Score=103, Evalue=2e-22,
Organism=Caenorhabditis elegans, GI17570191, Length=361, Percent_Identity=26.0387811634349, Blast_Score=103, Evalue=3e-22,
Organism=Caenorhabditis elegans, GI71988080, Length=303, Percent_Identity=26.0726072607261, Blast_Score=94, Evalue=2e-19,
Organism=Caenorhabditis elegans, GI71988063, Length=303, Percent_Identity=26.0726072607261, Blast_Score=94, Evalue=2e-19,
Organism=Caenorhabditis elegans, GI71988074, Length=320, Percent_Identity=23.75, Blast_Score=73, Evalue=3e-13,
Organism=Saccharomyces cerevisiae, GI6322581, Length=464, Percent_Identity=74.5689655172414, Blast_Score=696, Evalue=0.0,
Organism=Saccharomyces cerevisiae, GI6319603, Length=380, Percent_Identity=26.5789473684211, Blast_Score=107, Evalue=5e-24,
Organism=Saccharomyces cerevisiae, GI6319370, Length=378, Percent_Identity=25.3968253968254, Blast_Score=99, Evalue=2e-21,
Organism=Saccharomyces cerevisiae, GI6320016, Length=218, Percent_Identity=26.605504587156, Blast_Score=82, Evalue=2e-16,
Organism=Drosophila melanogaster, GI24638766, Length=474, Percent_Identity=77.6371308016878, Blast_Score=734, Evalue=0.0,
Organism=Drosophila melanogaster, GI28574560, Length=474, Percent_Identity=68.5654008438818, Blast_Score=658, Evalue=0.0,
Organism=Drosophila melanogaster, GI24638768, Length=90, Percent_Identity=74.4444444444444, Blast_Score=133, Evalue=3e-31,
Organism=Drosophila melanogaster, GI24583988, Length=327, Percent_Identity=27.82874617737, Blast_Score=119, Evalue=5e-27,
Organism=Drosophila melanogaster, GI24583986, Length=327, Percent_Identity=27.82874617737, Blast_Score=119, Evalue=5e-27,
Organism=Drosophila melanogaster, GI24583984, Length=327, Percent_Identity=27.82874617737, Blast_Score=119, Evalue=5e-27,
Organism=Drosophila melanogaster, GI24583992, Length=327, Percent_Identity=27.5229357798165, Blast_Score=118, Evalue=8e-27,
Organism=Drosophila melanogaster, GI20129479, Length=312, Percent_Identity=27.8846153846154, Blast_Score=116, Evalue=3e-26,
Organism=Drosophila melanogaster, GI281361666, Length=365, Percent_Identity=26.3013698630137, Blast_Score=101, Evalue=9e-22,
Organism=Drosophila melanogaster, GI24646341, Length=365, Percent_Identity=26.3013698630137, Blast_Score=101, Evalue=9e-22,
Organism=Drosophila melanogaster, GI17136796, Length=365, Percent_Identity=26.3013698630137, Blast_Score=101, Evalue=9e-22,
Organism=Drosophila melanogaster, GI24658560, Length=303, Percent_Identity=25.7425742574257, Blast_Score=84, Evalue=1e-16,

Paralogues:

None

Copy number: 10836 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 8,000 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020003
- InterPro:   IPR000194
- InterPro:   IPR003593
- InterPro:   IPR005722
- InterPro:   IPR018118
- InterPro:   IPR000793
- InterPro:   IPR004100 [H]

Pfam domain/function: PF00006 ATP-synt_ab; PF00306 ATP-synt_ab_C; PF02874 ATP-synt_ab_N [H]

EC number: =3.6.3.14 [H]

Molecular weight: Translated: 50868; Mature: 50737

Theoretical pI: Translated: 4.73; Mature: 4.73

Prosite motif: PS00152 ATPASE_ALPHA_BETA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MANKVGRITQVIGAVVDVQFDGHLPEILNALETTNQGNRLVLEVAQHLGESTVRCIAMDA
CCCHHHHHHHHHHHHHEEEECCCHHHHHHHHHCCCCCCCHHHHHHHHHCCHHEEEEEEEC
TEGLVRGLEVTDTGAPIQVPVGAGTLGRIMNVIGEPVDELGPIEAEATRGIHQPAPSYAE
HHHHHCCCEEECCCCCEEEECCCCHHHHHHHHHCCCHHHHCCCCHHHHCCCCCCCCHHHH
QATEAEILVTGIKVVDLLAPYAKGGKVGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAG
HHCCCHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEC
VGERTREGNDLYHEMIESNVNKDPHENGGSAAGSKCALVYGQMNEPPGARARVALTGLTV
CCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCEEEEEEHHHH
AEHFRDQGQDVLFFVDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGALQERITTTT
HHHHHHCCCEEEHHHHHHHHHHHCCHHHHHHHHHCCHHCCCCCCHHHHHHHHHHHHHCCC
KGSITSVQAIYVPADDLTDPAPAASFAHLDATTVLSRSIAEKGIYPAVDPLDSTSRMLSP
CCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCH
AILGDEHYNTARQVQQTLQRYKALQDIIAILGMDELSEEDKITVARARKIERFLSQPFHV
HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCCHHHHHHHHHHHHHCCCCEE
AEVFTGSPGKLVDLKDTIAGFKGLVEGKYDYLPEQAFYMVGSMEEAIEKGKKLAAEAA
EHHEECCCCCEEEHHHHHHHHHHHHCCHHHCCCHHHHHHHCCHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
ANKVGRITQVIGAVVDVQFDGHLPEILNALETTNQGNRLVLEVAQHLGESTVRCIAMDA
CCHHHHHHHHHHHHHEEEECCCHHHHHHHHHCCCCCCCHHHHHHHHHCCHHEEEEEEEC
TEGLVRGLEVTDTGAPIQVPVGAGTLGRIMNVIGEPVDELGPIEAEATRGIHQPAPSYAE
HHHHHCCCEEECCCCCEEEECCCCHHHHHHHHHCCCHHHHCCCCHHHHCCCCCCCCHHHH
QATEAEILVTGIKVVDLLAPYAKGGKVGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAG
HHCCCHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEC
VGERTREGNDLYHEMIESNVNKDPHENGGSAAGSKCALVYGQMNEPPGARARVALTGLTV
CCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCEEEEEEHHHH
AEHFRDQGQDVLFFVDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGALQERITTTT
HHHHHHCCCEEEHHHHHHHHHHHCCHHHHHHHHHCCHHCCCCCCHHHHHHHHHHHHHCCC
KGSITSVQAIYVPADDLTDPAPAASFAHLDATTVLSRSIAEKGIYPAVDPLDSTSRMLSP
CCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCH
AILGDEHYNTARQVQQTLQRYKALQDIIAILGMDELSEEDKITVARARKIERFLSQPFHV
HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCCHHHHHHHHHHHHHCCCCEE
AEVFTGSPGKLVDLKDTIAGFKGLVEGKYDYLPEQAFYMVGSMEEAIEKGKKLAAEAA
EHHEECCCCCEEEHHHHHHHHHHHHCCHHHCCCHHHHHHHCCHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA