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The map label for this gene is ycbB [H]

Identifier: 154246011

GI number: 154246011

Start: 2325813

End: 2327831

Strand: Reverse

Name: ycbB [H]

Synonym: Xaut_2068

Alternate gene names: 154246011

Gene position: 2327831-2325813 (Counterclockwise)

Preceding gene: 154246012

Following gene: 154246010

Centisome position: 43.85

GC content: 70.38

Gene sequence:

>2019_bases
ATGTTTGGGGCCAGTGGGTACGGGGCTAACGGGTATCGGCGTCAGGACAAAGGGCGCGTGGTGACGGGGCTGGCGGGCAC
GCTCTCCCGGCTGATGGCCGCAGGGCTCGTCGGCGCGTCGCTTGCCGCGTCCATCCCCGCCTTTGCGGAACAGCCCGATC
CGCCCGCCGCAGCACCCCTCACCGGCAATGCCGGCATGGGAACGGGCGATGTGCCCCTGACCACGCCGCTGCCCCCCGTG
ACGGCCCCCGCCCCGCGCGCTGTGGCGGCGACGCCCGCACCGGTTTCGCCCGCCGCACCGGCAACTCGGGTGCGTGGCGG
CGTGGATTCGGCTGGCGACACGGCCCAAACCCTTCCGCTGACACATTCCGCTCCGCCGGCACAGGCCCAGTCGGCGCCGA
CCTCCACCCCGGCCCAGCCTGCTGCGACGATCGCCGCACCCGCGCCGGCCGCGACCCCCGCGCCGGCGGCCCCGCCGGTG
ACCGTCGCGGTTGAAGATCCCCTCGCCCCGGTGGCCGAGGCCATCGCGGCGCTGCTGGCGACGCCCGAGACCGTCACGGC
TTCGAAGAAGGAGCAGGAAGCCCTCGTCGCCTTCTACGGCGCGCGACAGAACATGCCGGTGTTCGTCGGGCTGAAAGGCA
TCGACGCCCGCGGCAAGGCGGTGATCGCCCGCTTCGAGGCCGCCGGCGAGGATGGCCTCGAGCCCACCGATTATGCGGTT
CCCGCACCGAAGCCCGGCGCCACCGCCTCAGATCTTGCCCGCACCGAGCTGAAGCTCGCCGTCGCGGTGCTCACCTATGC
GCGGCATGCCCAGGCCGGCCGCTTCGATCCCGGCCGCATCTCGGCGCTGGTGACACCGGTGCGCGAGATTCCCGACCCCA
CCGCAGTGCTGGCCAAGGTGGCCTATGCCCCCGATGCCAATGCGGCGCTGGCCGCCTACAACCCGACCCATGCCGGCTAT
CGCGCCCTGAAGGCGCAGCTCGCCCGGGTGACCGGACAGACCCCCGGCGTGGTTGCCGTTCCGCCCGGCGCGCAGATCCG
CCCCGGCGCCAGCGACCCGCGCATTCCCACCCTGCGCACCCGCCTCGGCGTCACCGGCCGGCCGGCGGACGACAACGCCT
ACGACCCGGCGCTGGTGGATGCGGTGAAGGCCTTCCAGGAGGCATCCAAGATCAAGCCCACCGGCATCGTCGGCCCCTCC
ACCATCGCCGCCCTCAACGCCGGGGCCACCCCCGGCGGCGGCAGCCTGAAGTCGGACGTAATCGCCAACATGGAGCGCTG
GCGCTGGCTGCCGCGCGACCTCGGCGAATCCTATGTGATGGTGAACATTCCGGAATTCCTGGTCCGCATCTACCAGAGCG
GCCATGAGATCCACGAGACGCGGGTAGTGGTCGGCAAGCCGGAGACGCCGACGCCCCTGCTCAGCCGCGAGATGCAGTAC
ATCGTGGTGAACCCGGCGTGGAACATCCCGCCGTCCATCGCCCGCAACGAGATGATGCCGCTGCTGCGGTCCGACCCCTC
GGCCCTGTCGCGGCGCGGGATCGAGGTGGTGCGCAACGGGTCCGGCGGCTATTCGTTCCGCCAGGTGCCCAGCGAGCGCA
ACGCGCTGGGGCGCATCAAGTTCATGTTCCCCAACGACCATTCGGTCTATCTGCACGACACCCCGTCCAAGGCGCTGTTC
CAGAACGACCGGCGCGCCTACAGCCACGGCTGCGTGCGGGTCTACGAGCCGCTCAAGTTCGGCGAAGTCATCTTCAACCT
CGGCCTGCCCAACGATCACTGGACCCAGACGCGCATCGGCAAGATGTTCGGCAGCTCCGAGCGCTATGTGAACCTGAAGC
AGCGCTTCCCGGTGCACATCGTCTATTTCAACGTGGTGGTGGACGATGCCGGCCGCCTCGCTGTGCGCGAGGATCTCTAC
GGCATCAATGCCGAGACCAAGACCCTGCTGGGCCTCAACGGCAAGCAGCGAATCGCCGACGGCACCTCCACCCGGGGCAC
CGCGCCGAAGACGCGCTGA

Upstream 100 bases:

>100_bases
AGTGACAAGGCAGTGAAAACCTTGGCCCGCTCAAGCTTGTGAGTTGATCGGAACGCCGGAGCACGGCACCAACGGGCGGG
GCTGTGGCGAGGAGAAGGCC

Downstream 100 bases:

>100_bases
TCCTCCCCAACATACCGCTGCGACAGGGACGGCCCAACGGCCGTCCCTTTGTTTTTCAATAACTTGAAGCTCTGAGCCCA
ATCGCACACGCGTCAGTCTG

Product: peptidoglycan binding domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 672; Mature: 672

Protein sequence:

>672_residues
MFGASGYGANGYRRQDKGRVVTGLAGTLSRLMAAGLVGASLAASIPAFAEQPDPPAAAPLTGNAGMGTGDVPLTTPLPPV
TAPAPRAVAATPAPVSPAAPATRVRGGVDSAGDTAQTLPLTHSAPPAQAQSAPTSTPAQPAATIAAPAPAATPAPAAPPV
TVAVEDPLAPVAEAIAALLATPETVTASKKEQEALVAFYGARQNMPVFVGLKGIDARGKAVIARFEAAGEDGLEPTDYAV
PAPKPGATASDLARTELKLAVAVLTYARHAQAGRFDPGRISALVTPVREIPDPTAVLAKVAYAPDANAALAAYNPTHAGY
RALKAQLARVTGQTPGVVAVPPGAQIRPGASDPRIPTLRTRLGVTGRPADDNAYDPALVDAVKAFQEASKIKPTGIVGPS
TIAALNAGATPGGGSLKSDVIANMERWRWLPRDLGESYVMVNIPEFLVRIYQSGHEIHETRVVVGKPETPTPLLSREMQY
IVVNPAWNIPPSIARNEMMPLLRSDPSALSRRGIEVVRNGSGGYSFRQVPSERNALGRIKFMFPNDHSVYLHDTPSKALF
QNDRRAYSHGCVRVYEPLKFGEVIFNLGLPNDHWTQTRIGKMFGSSERYVNLKQRFPVHIVYFNVVVDDAGRLAVREDLY
GINAETKTLLGLNGKQRIADGTSTRGTAPKTR

Sequences:

>Translated_672_residues
MFGASGYGANGYRRQDKGRVVTGLAGTLSRLMAAGLVGASLAASIPAFAEQPDPPAAAPLTGNAGMGTGDVPLTTPLPPV
TAPAPRAVAATPAPVSPAAPATRVRGGVDSAGDTAQTLPLTHSAPPAQAQSAPTSTPAQPAATIAAPAPAATPAPAAPPV
TVAVEDPLAPVAEAIAALLATPETVTASKKEQEALVAFYGARQNMPVFVGLKGIDARGKAVIARFEAAGEDGLEPTDYAV
PAPKPGATASDLARTELKLAVAVLTYARHAQAGRFDPGRISALVTPVREIPDPTAVLAKVAYAPDANAALAAYNPTHAGY
RALKAQLARVTGQTPGVVAVPPGAQIRPGASDPRIPTLRTRLGVTGRPADDNAYDPALVDAVKAFQEASKIKPTGIVGPS
TIAALNAGATPGGGSLKSDVIANMERWRWLPRDLGESYVMVNIPEFLVRIYQSGHEIHETRVVVGKPETPTPLLSREMQY
IVVNPAWNIPPSIARNEMMPLLRSDPSALSRRGIEVVRNGSGGYSFRQVPSERNALGRIKFMFPNDHSVYLHDTPSKALF
QNDRRAYSHGCVRVYEPLKFGEVIFNLGLPNDHWTQTRIGKMFGSSERYVNLKQRFPVHIVYFNVVVDDAGRLAVREDLY
GINAETKTLLGLNGKQRIADGTSTRGTAPKTR
>Mature_672_residues
MFGASGYGANGYRRQDKGRVVTGLAGTLSRLMAAGLVGASLAASIPAFAEQPDPPAAAPLTGNAGMGTGDVPLTTPLPPV
TAPAPRAVAATPAPVSPAAPATRVRGGVDSAGDTAQTLPLTHSAPPAQAQSAPTSTPAQPAATIAAPAPAATPAPAAPPV
TVAVEDPLAPVAEAIAALLATPETVTASKKEQEALVAFYGARQNMPVFVGLKGIDARGKAVIARFEAAGEDGLEPTDYAV
PAPKPGATASDLARTELKLAVAVLTYARHAQAGRFDPGRISALVTPVREIPDPTAVLAKVAYAPDANAALAAYNPTHAGY
RALKAQLARVTGQTPGVVAVPPGAQIRPGASDPRIPTLRTRLGVTGRPADDNAYDPALVDAVKAFQEASKIKPTGIVGPS
TIAALNAGATPGGGSLKSDVIANMERWRWLPRDLGESYVMVNIPEFLVRIYQSGHEIHETRVVVGKPETPTPLLSREMQY
IVVNPAWNIPPSIARNEMMPLLRSDPSALSRRGIEVVRNGSGGYSFRQVPSERNALGRIKFMFPNDHSVYLHDTPSKALF
QNDRRAYSHGCVRVYEPLKFGEVIFNLGLPNDHWTQTRIGKMFGSSERYVNLKQRFPVHIVYFNVVVDDAGRLAVREDLY
GINAETKTLLGLNGKQRIADGTSTRGTAPKTR

Specific function: Responsible, at least in part, for generating a meso- diaminopimelyl-3-a meso-diaminopimelyl-3 cross-link [H]

COG id: COG2989

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the YkuD family [H]

Homologues:

Organism=Escherichia coli, GI1787155, Length=296, Percent_Identity=36.1486486486487, Blast_Score=194, Evalue=1e-50,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002477
- InterPro:   IPR005490 [H]

Pfam domain/function: PF01471 PG_binding_1; PF03734 YkuD [H]

EC number: NA

Molecular weight: Translated: 70534; Mature: 70534

Theoretical pI: Translated: 9.97; Mature: 9.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.1 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.1 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFGASGYGANGYRRQDKGRVVTGLAGTLSRLMAAGLVGASLAASIPAFAEQPDPPAAAPL
CCCCCCCCCCCCEECCCCCEEEHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCCCC
TGNAGMGTGDVPLTTPLPPVTAPAPRAVAATPAPVSPAAPATRVRGGVDSAGDTAQTLPL
CCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCHHHHCCCCCCCCCCCEECCC
THSAPPAQAQSAPTSTPAQPAATIAAPAPAATPAPAAPPVTVAVEDPLAPVAEAIAALLA
CCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHC
TPETVTASKKEQEALVAFYGARQNMPVFVGLKGIDARGKAVIARFEAAGEDGLEPTDYAV
CCCHHCCCCHHHHHEEEEECCCCCCCEEEEEECCCCCCCEEEEEEHHCCCCCCCCCCCCC
PAPKPGATASDLARTELKLAVAVLTYARHAQAGRFDPGRISALVTPVREIPDPTAVLAKV
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHH
AYAPDANAALAAYNPTHAGYRALKAQLARVTGQTPGVVAVPPGAQIRPGASDPRIPTLRT
HCCCCCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCHHHH
RLGVTGRPADDNAYDPALVDAVKAFQEASKIKPTGIVGPSTIAALNAGATPGGGSLKSDV
HCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHEECCCCCCCCCCHHHHH
IANMERWRWLPRDLGESYVMVNIPEFLVRIYQSGHEIHETRVVVGKPETPTPLLSREMQY
HHHHHHHCCCHHHHCCCEEEEECHHHHHHHHHCCCCEEHEEEEEECCCCCCHHHHCCCEE
IVVNPAWNIPPSIARNEMMPLLRSDPSALSRRGIEVVRNGSGGYSFRQVPSERNALGRIK
EEECCCCCCCHHHHHHHHHHHHCCCHHHHHHCCCEEEECCCCCCHHHCCCCCCCCCEEEE
FMFPNDHSVYLHDTPSKALFQNDRRAYSHGCVRVYEPLKFGEVIFNLGLPNDHWTQTRIG
EEECCCCEEEEECCCCHHHHHCCHHHHHCCCEEEECCCHHCCEEEECCCCCCCCHHHHHH
KMFGSSERYVNLKQRFPVHIVYFNVVVDDAGRLAVREDLYGINAETKTLLGLNGKQRIAD
HHHCCCCCEEEHHHCCCEEEEEEEEEECCCCCEEEHHHHCCCCCCCEEEECCCCCHHCCC
GTSTRGTAPKTR
CCCCCCCCCCCC
>Mature Secondary Structure
MFGASGYGANGYRRQDKGRVVTGLAGTLSRLMAAGLVGASLAASIPAFAEQPDPPAAAPL
CCCCCCCCCCCCEECCCCCEEEHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCCCC
TGNAGMGTGDVPLTTPLPPVTAPAPRAVAATPAPVSPAAPATRVRGGVDSAGDTAQTLPL
CCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCHHHHCCCCCCCCCCCEECCC
THSAPPAQAQSAPTSTPAQPAATIAAPAPAATPAPAAPPVTVAVEDPLAPVAEAIAALLA
CCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHC
TPETVTASKKEQEALVAFYGARQNMPVFVGLKGIDARGKAVIARFEAAGEDGLEPTDYAV
CCCHHCCCCHHHHHEEEEECCCCCCCEEEEEECCCCCCCEEEEEEHHCCCCCCCCCCCCC
PAPKPGATASDLARTELKLAVAVLTYARHAQAGRFDPGRISALVTPVREIPDPTAVLAKV
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHH
AYAPDANAALAAYNPTHAGYRALKAQLARVTGQTPGVVAVPPGAQIRPGASDPRIPTLRT
HCCCCCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCHHHH
RLGVTGRPADDNAYDPALVDAVKAFQEASKIKPTGIVGPSTIAALNAGATPGGGSLKSDV
HCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHEECCCCCCCCCCHHHHH
IANMERWRWLPRDLGESYVMVNIPEFLVRIYQSGHEIHETRVVVGKPETPTPLLSREMQY
HHHHHHHCCCHHHHCCCEEEEECHHHHHHHHHCCCCEEHEEEEEECCCCCCHHHHCCCEE
IVVNPAWNIPPSIARNEMMPLLRSDPSALSRRGIEVVRNGSGGYSFRQVPSERNALGRIK
EEECCCCCCCHHHHHHHHHHHHCCCHHHHHHCCCEEEECCCCCCHHHCCCCCCCCCEEEE
FMFPNDHSVYLHDTPSKALFQNDRRAYSHGCVRVYEPLKFGEVIFNLGLPNDHWTQTRIG
EEECCCCEEEEECCCCHHHHHCCHHHHHCCCEEEECCCHHCCEEEECCCCCCCCHHHHHH
KMFGSSERYVNLKQRFPVHIVYFNVVVDDAGRLAVREDLYGINAETKTLLGLNGKQRIAD
HHHCCCCCEEEHHHCCCEEEEEEEEEECCCCCEEEHHHHCCCCCCCEEEECCCCCHHCCC
GTSTRGTAPKTR
CCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503; 1989883 [H]